data_5JQ7 # _model_server_result.job_id tFpGjqEsoHFdvDSA_MhS-w _model_server_result.datetime_utc '2024-10-14 05:22:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5jq7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":705}' # _entry.id 5JQ7 # _exptl.entry_id 5JQ7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 405.96 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description Toremifene _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5JQ7 _cell.length_a 113.45 _cell.length_b 113.45 _cell.length_c 306.87 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5JQ7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_565 -y,x-y+1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 -56.725 98.250582 0 3 'crystal symmetry operation' 3_455 -x+y-1,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -113.45 0 0 # _struct_asym.details ? _struct_asym.entity_id 7 _struct_asym.id K _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 3 3 2 BMA NAG C1 O1 . O4 HO4 . sing 3 ? 3 4 3 MAN BMA C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n C NAG 1 C 1 NAG D 621 NAG 3 n C NAG 2 C 2 NAG D 622 NAG 3 n C BMA 3 C 3 BMA D 623 BMA 3 n C MAN 4 C 4 MAN D 624 MAN # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 26 A CYS 53 1_555 B SG CYS 108 B CYS 609 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf2 A SG CYS 81 A CYS 108 1_555 A SG CYS 108 A CYS 135 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf3 A SG CYS 94 A CYS 121 1_555 A SG CYS 120 A CYS 147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf4 B SG CYS 10 B CYS 511 1_555 B SG CYS 55 B CYS 556 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf5 B SG CYS 100 B CYS 601 1_555 B SG CYS 107 B CYS 608 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? covale ? covale1 A ND2 ASN 201 A ASN 228 1_555 E C1 NAG . A NAG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? covale ? covale2 A ND2 ASN 211 A ASN 238 1_555 F C1 NAG . A NAG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale3 A ND2 ASN 230 A ASN 257 1_555 D C1 NAG . A NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale4 A ND2 ASN 241 A ASN 268 1_555 G C1 NAG . A NAG 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? covale ? covale5 B ND2 ASN 62 B ASN 563 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale6 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale7 C O4 NAG . C NAG 2 1_555 C C1 BMA . C BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale8 C O6 BMA . C BMA 3 1_555 C C1 MAN . C MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? # _chem_comp.formula 'C26 H28 Cl N O' _chem_comp.formula_weight 405.96 _chem_comp.id T0R _chem_comp.mon_nstd_flag . _chem_comp.name Toremifene _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C19 C23 T0R doub 390 n y C19 C13 T0R sing 391 n y C23 C20 T0R sing 392 n y C26 N T0R sing 393 n n C13 C5 T0R doub 394 n y N C25 T0R sing 395 n n N C17 T0R sing 396 n n C20 C14 T0R doub 397 n y C18 C17 T0R sing 398 n n C18 O T0R sing 399 n n O C10 T0R sing 400 n n C5 C14 T0R sing 401 n y C5 C1 T0R sing 402 n n C10 C12 T0R doub 403 n y C10 C11 T0R sing 404 n y C12 C8 T0R sing 405 n y C11 C7 T0R doub 406 n y C8 C3 T0R doub 407 n y C7 C3 T0R sing 408 n y C3 C1 T0R sing 409 n n C1 C2 T0R doub 410 z n C2 C4 T0R sing 411 n n C2 C6 T0R sing 412 n n C4 C9 T0R sing 413 n n C6 C16 T0R doub 414 n y C6 C15 T0R sing 415 n y C16 C22 T0R sing 416 n y C9 CL T0R sing 417 n n C15 C21 T0R doub 418 n y C22 C24 T0R doub 419 n y C21 C24 T0R sing 420 n y C11 H1 T0R sing 421 n n C14 H2 T0R sing 422 n n C9 H3 T0R sing 423 n n C9 H4 T0R sing 424 n n C4 H5 T0R sing 425 n n C4 H6 T0R sing 426 n n C16 H7 T0R sing 427 n n C22 H8 T0R sing 428 n n C24 H9 T0R sing 429 n n C21 H10 T0R sing 430 n n C15 H11 T0R sing 431 n n C20 H12 T0R sing 432 n n C23 H13 T0R sing 433 n n C19 H14 T0R sing 434 n n C13 H15 T0R sing 435 n n C8 H16 T0R sing 436 n n C12 H17 T0R sing 437 n n C7 H18 T0R sing 438 n n C18 H19 T0R sing 439 n n C18 H20 T0R sing 440 n n C17 H21 T0R sing 441 n n C17 H22 T0R sing 442 n n C26 H24 T0R sing 443 n n C26 H25 T0R sing 444 n n C26 H26 T0R sing 445 n n C25 H27 T0R sing 446 n n C25 H28 T0R sing 447 n n C25 H29 T0R sing 448 n n # _atom_sites.entry_id 5JQ7 _atom_sites.fract_transf_matrix[1][1] 0.008814 _atom_sites.fract_transf_matrix[1][2] 0.005089 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010178 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003259 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 NAG A 1 601 2 NAG NAG . E 4 NAG A 1 602 10 NAG NAG . F 4 NAG A 1 603 11 NAG NAG . G 4 NAG A 1 604 12 NAG NAG . H 5 GOL A 1 605 6 GOL GOL . I 5 GOL A 1 606 7 GOL GOL . J 6 DMS A 1 607 1 DMS DMS . K 7 T0R B 1 705 1 T0R T0R . L 8 HOH A 1 701 18 HOH HOH . L 8 HOH A 2 702 10 HOH HOH . L 8 HOH A 3 703 146 HOH HOH . L 8 HOH A 4 704 6 HOH HOH . L 8 HOH A 5 705 37 HOH HOH . L 8 HOH A 6 706 17 HOH HOH . L 8 HOH A 7 707 141 HOH HOH . L 8 HOH A 8 708 38 HOH HOH . L 8 HOH A 9 709 5 HOH HOH . L 8 HOH A 10 710 41 HOH HOH . L 8 HOH A 11 711 8 HOH HOH . L 8 HOH A 12 712 50 HOH HOH . L 8 HOH A 13 713 1 HOH HOH . L 8 HOH A 14 714 140 HOH HOH . L 8 HOH A 15 715 23 HOH HOH . L 8 HOH A 16 716 85 HOH HOH . L 8 HOH A 17 717 46 HOH HOH . L 8 HOH A 18 718 136 HOH HOH . L 8 HOH A 19 719 69 HOH HOH . L 8 HOH A 20 720 127 HOH HOH . L 8 HOH A 21 721 135 HOH HOH . L 8 HOH A 22 722 97 HOH HOH . L 8 HOH A 23 723 22 HOH HOH . L 8 HOH A 24 724 68 HOH HOH . L 8 HOH A 25 725 83 HOH HOH . L 8 HOH A 26 726 121 HOH HOH . L 8 HOH A 27 727 123 HOH HOH . L 8 HOH A 28 728 53 HOH HOH . L 8 HOH A 29 729 147 HOH HOH . L 8 HOH A 30 730 26 HOH HOH . L 8 HOH A 31 731 118 HOH HOH . L 8 HOH A 32 732 111 HOH HOH . M 8 HOH B 1 801 74 HOH HOH . M 8 HOH B 2 802 29 HOH HOH . M 8 HOH B 3 803 67 HOH HOH . M 8 HOH B 4 804 3 HOH HOH . M 8 HOH B 5 805 20 HOH HOH . M 8 HOH B 6 806 52 HOH HOH . M 8 HOH B 7 807 87 HOH HOH . M 8 HOH B 8 808 65 HOH HOH . M 8 HOH B 9 809 142 HOH HOH . M 8 HOH B 10 810 49 HOH HOH . M 8 HOH B 11 811 99 HOH HOH . M 8 HOH B 12 812 112 HOH HOH . M 8 HOH B 13 813 84 HOH HOH . M 8 HOH B 14 814 36 HOH HOH . M 8 HOH B 15 815 60 HOH HOH . M 8 HOH B 16 816 86 HOH HOH . M 8 HOH B 17 817 126 HOH HOH . M 8 HOH B 18 818 144 HOH HOH . M 8 HOH B 19 819 45 HOH HOH . M 8 HOH B 20 820 143 HOH HOH . M 8 HOH B 21 821 43 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C11 T0R . . . K 7 -43.402 16.175 -8.908 1 82.56 ? C11 T0R 705 B 1 HETATM 2 C C14 T0R . . . K 7 -47.533 11.816 -8.955 1 71.2 ? C14 T0R 705 B 1 HETATM 3 CL CL T0R . . . K 7 -47.28 11.88 -5.173 1 97.87 ? CL T0R 705 B 1 HETATM 4 C C9 T0R . . . K 7 -46.443 10.521 -5.965 1 90.39 ? C9 T0R 705 B 1 HETATM 5 C C4 T0R . . . K 7 -45.249 10.92 -6.834 1 88.47 ? C4 T0R 705 B 1 HETATM 6 C C2 T0R . . . K 7 -44.982 12.396 -7.127 1 82.7 ? C2 T0R 705 B 1 HETATM 7 C C6 T0R . . . K 7 -44.087 13.098 -6.138 1 81.54 ? C6 T0R 705 B 1 HETATM 8 C C16 T0R . . . K 7 -42.722 12.804 -6.134 1 82.97 ? C16 T0R 705 B 1 HETATM 9 C C22 T0R . . . K 7 -41.86 13.44 -5.239 1 83.58 ? C22 T0R 705 B 1 HETATM 10 C C24 T0R . . . K 7 -42.362 14.379 -4.341 1 83.2 ? C24 T0R 705 B 1 HETATM 11 C C21 T0R . . . K 7 -43.724 14.675 -4.344 1 83.26 ? C21 T0R 705 B 1 HETATM 12 C C15 T0R . . . K 7 -44.587 14.04 -5.239 1 81.73 ? C15 T0R 705 B 1 HETATM 13 C C1 T0R . . . K 7 -45.443 13.051 -8.227 1 78.47 ? C1 T0R 705 B 1 HETATM 14 C C5 T0R . . . K 7 -46.31 12.405 -9.276 1 72.72 ? C5 T0R 705 B 1 HETATM 15 C C20 T0R . . . K 7 -48.314 11.233 -9.953 1 70.78 ? C20 T0R 705 B 1 HETATM 16 C C23 T0R . . . K 7 -47.889 11.244 -11.284 1 71.81 ? C23 T0R 705 B 1 HETATM 17 C C19 T0R . . . K 7 -46.672 11.836 -11.612 1 71.13 ? C19 T0R 705 B 1 HETATM 18 C C13 T0R . . . K 7 -45.889 12.417 -10.61 1 71.54 ? C13 T0R 705 B 1 HETATM 19 C C3 T0R . . . K 7 -45.101 14.497 -8.514 1 80.61 ? C3 T0R 705 B 1 HETATM 20 C C8 T0R . . . K 7 -46.082 15.468 -8.736 1 81.06 ? C8 T0R 705 B 1 HETATM 21 C C12 T0R . . . K 7 -45.723 16.792 -9.027 1 81.06 ? C12 T0R 705 B 1 HETATM 22 C C10 T0R . . . K 7 -44.372 17.151 -9.115 1 83.77 ? C10 T0R 705 B 1 HETATM 23 C C7 T0R . . . K 7 -43.759 14.865 -8.628 1 80.96 ? C7 T0R 705 B 1 HETATM 24 O O T0R . . . K 7 -43.895 18.415 -9.384 1 88.78 ? O T0R 705 B 1 HETATM 25 C C18 T0R . . . K 7 -44.631 19.551 -9.822 1 95.58 ? C18 T0R 705 B 1 HETATM 26 C C17 T0R . . . K 7 -43.765 20.788 -9.593 1 97.67 ? C17 T0R 705 B 1 HETATM 27 N N T0R . . . K 7 -44.212 21.878 -10.483 1 101.57 ? N T0R 705 B 1 HETATM 28 C C26 T0R . . . K 7 -43.088 22.765 -10.838 1 103.81 ? C26 T0R 705 B 1 HETATM 29 C C25 T0R . . . K 7 -45.296 22.659 -9.857 1 101.71 ? C25 T0R 705 B 1 # _model_server_stats.io_time_ms 23 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 439 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 29 #