data_5JQ8 # _model_server_result.job_id Rmfb5IgspnQySAQIMoiYCg _model_server_result.datetime_utc '2024-11-23 12:57:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5jq8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 5JQ8 # _exptl.entry_id 5JQ8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 394.513 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (3S,4S)-4-[[[7-[(phenylmethyl)amino]-3-propan-2-yl-pyrazolo[1,5-a]pyrimidin-5-yl]amino]methyl]piperidin-3-ol _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5JQ8 _cell.length_a 53.67 _cell.length_b 71.67 _cell.length_c 71.98 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5JQ8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C22 H30 N6 O' _chem_comp.formula_weight 394.513 _chem_comp.id I73 _chem_comp.mon_nstd_flag . _chem_comp.name (3S,4S)-4-[[[7-[(phenylmethyl)amino]-3-propan-2-yl-pyrazolo[1,5-a]pyrimidin-5-yl]amino]methyl]piperidin-3-ol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C14 C15 I73 doub 152 n y C14 C13 I73 sing 153 n y C15 C16 I73 sing 154 n y C13 C12 I73 doub 155 n y C16 C17 I73 doub 156 n y C12 C17 I73 sing 157 n y C12 C11 I73 sing 158 n n N10 C11 I73 sing 159 n n N10 C3 I73 sing 160 n n N1 C9 I73 doub 161 n y N1 N2 I73 sing 162 n y C9 C8 I73 sing 163 n y C3 N2 I73 sing 164 n y C3 C4 I73 doub 165 n y N2 C7 I73 sing 166 n y C8 C7 I73 doub 167 n y C8 C26 I73 sing 168 n n C27 C26 I73 sing 169 n n C4 C5 I73 sing 170 n y C7 N6 I73 sing 171 n y C5 N6 I73 doub 172 n y C5 N18 I73 sing 173 n n C26 C28 I73 sing 174 n n N18 C40 I73 sing 175 n n C40 C41 I73 sing 176 n n C41 C46 I73 sing 177 n n C41 C42 I73 sing 178 n n C46 C45 I73 sing 179 n n C45 N44 I73 sing 180 n n C42 C43 I73 sing 181 n n C42 O1 I73 sing 182 n n C43 N44 I73 sing 183 n n O1 H1 I73 sing 184 n n C42 H2 I73 sing 185 n n C43 H3 I73 sing 186 n n C43 H4 I73 sing 187 n n N44 H5 I73 sing 188 n n C45 H7 I73 sing 189 n n C45 H8 I73 sing 190 n n C46 H9 I73 sing 191 n n C46 H10 I73 sing 192 n n C41 H11 I73 sing 193 n n C40 H12 I73 sing 194 n n C40 H13 I73 sing 195 n n N18 H14 I73 sing 196 n n C4 H15 I73 sing 197 n n C9 H16 I73 sing 198 n n C26 H17 I73 sing 199 n n C28 H18 I73 sing 200 n n C28 H19 I73 sing 201 n n C28 H20 I73 sing 202 n n C27 H21 I73 sing 203 n n C27 H22 I73 sing 204 n n C27 H23 I73 sing 205 n n N10 H24 I73 sing 206 n n C11 H25 I73 sing 207 n n C11 H26 I73 sing 208 n n C17 H27 I73 sing 209 n n C16 H28 I73 sing 210 n n C15 H29 I73 sing 211 n n C14 H30 I73 sing 212 n n C13 H31 I73 sing 213 n n # _atom_sites.entry_id 5JQ8 _atom_sites.fract_transf_matrix[1][1] 0.018632 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013953 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013893 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 I73 A 1 301 0 I73 I73 . C 3 HOH A 1 401 224 HOH HOH . C 3 HOH A 2 402 168 HOH HOH . C 3 HOH A 3 403 110 HOH HOH . C 3 HOH A 4 404 68 HOH HOH . C 3 HOH A 5 405 37 HOH HOH . C 3 HOH A 6 406 5 HOH HOH . C 3 HOH A 7 407 42 HOH HOH . C 3 HOH A 8 408 67 HOH HOH . C 3 HOH A 9 409 204 HOH HOH . C 3 HOH A 10 410 173 HOH HOH . C 3 HOH A 11 411 8 HOH HOH . C 3 HOH A 12 412 125 HOH HOH . C 3 HOH A 13 413 220 HOH HOH . C 3 HOH A 14 414 23 HOH HOH . C 3 HOH A 15 415 138 HOH HOH . C 3 HOH A 16 416 1 HOH HOH . C 3 HOH A 17 417 83 HOH HOH . C 3 HOH A 18 418 118 HOH HOH . C 3 HOH A 19 419 22 HOH HOH . C 3 HOH A 20 420 69 HOH HOH . C 3 HOH A 21 421 135 HOH HOH . C 3 HOH A 22 422 4 HOH HOH . C 3 HOH A 23 423 16 HOH HOH . C 3 HOH A 24 424 25 HOH HOH . C 3 HOH A 25 425 215 HOH HOH . C 3 HOH A 26 426 288 HOH HOH . C 3 HOH A 27 427 101 HOH HOH . C 3 HOH A 28 428 158 HOH HOH . C 3 HOH A 29 429 14 HOH HOH . C 3 HOH A 30 430 129 HOH HOH . C 3 HOH A 31 431 44 HOH HOH . C 3 HOH A 32 432 1 HOH HOH . C 3 HOH A 33 433 218 HOH HOH . C 3 HOH A 34 434 9 HOH HOH . C 3 HOH A 35 435 146 HOH HOH . C 3 HOH A 36 436 2 HOH HOH . C 3 HOH A 37 437 91 HOH HOH . C 3 HOH A 38 438 6 HOH HOH . C 3 HOH A 39 439 169 HOH HOH . C 3 HOH A 40 440 26 HOH HOH . C 3 HOH A 41 441 38 HOH HOH . C 3 HOH A 42 442 15 HOH HOH . C 3 HOH A 43 443 4 HOH HOH . C 3 HOH A 44 444 289 HOH HOH . C 3 HOH A 45 445 96 HOH HOH . C 3 HOH A 46 446 30 HOH HOH . C 3 HOH A 47 447 115 HOH HOH . C 3 HOH A 48 448 53 HOH HOH . C 3 HOH A 49 449 290 HOH HOH . C 3 HOH A 50 450 30 HOH HOH . C 3 HOH A 51 451 68 HOH HOH . C 3 HOH A 52 452 150 HOH HOH . C 3 HOH A 53 453 28 HOH HOH . C 3 HOH A 54 454 216 HOH HOH . C 3 HOH A 55 455 1 HOH HOH . C 3 HOH A 56 456 12 HOH HOH . C 3 HOH A 57 457 19 HOH HOH . C 3 HOH A 58 458 73 HOH HOH . C 3 HOH A 59 459 45 HOH HOH . C 3 HOH A 60 460 174 HOH HOH . C 3 HOH A 61 461 48 HOH HOH . C 3 HOH A 62 462 73 HOH HOH . C 3 HOH A 63 463 62 HOH HOH . C 3 HOH A 64 464 287 HOH HOH . C 3 HOH A 65 465 286 HOH HOH . C 3 HOH A 66 466 158 HOH HOH . C 3 HOH A 67 467 178 HOH HOH . C 3 HOH A 68 468 192 HOH HOH . C 3 HOH A 69 469 8 HOH HOH . C 3 HOH A 70 470 57 HOH HOH . C 3 HOH A 71 471 92 HOH HOH . C 3 HOH A 72 472 21 HOH HOH . C 3 HOH A 73 473 58 HOH HOH . C 3 HOH A 74 474 55 HOH HOH . C 3 HOH A 75 475 98 HOH HOH . C 3 HOH A 76 476 11 HOH HOH . C 3 HOH A 77 477 93 HOH HOH . C 3 HOH A 78 478 105 HOH HOH . C 3 HOH A 79 479 103 HOH HOH . C 3 HOH A 80 480 72 HOH HOH . C 3 HOH A 81 481 86 HOH HOH . C 3 HOH A 82 482 31 HOH HOH . C 3 HOH A 83 483 39 HOH HOH . C 3 HOH A 84 484 87 HOH HOH . C 3 HOH A 85 485 107 HOH HOH . C 3 HOH A 86 486 47 HOH HOH . C 3 HOH A 87 487 32 HOH HOH . C 3 HOH A 88 488 10 HOH HOH . C 3 HOH A 89 489 126 HOH HOH . C 3 HOH A 90 490 35 HOH HOH . C 3 HOH A 91 491 13 HOH HOH . C 3 HOH A 92 492 44 HOH HOH . C 3 HOH A 93 493 52 HOH HOH . C 3 HOH A 94 494 207 HOH HOH . C 3 HOH A 95 495 77 HOH HOH . C 3 HOH A 96 496 84 HOH HOH . C 3 HOH A 97 497 259 HOH HOH . C 3 HOH A 98 498 36 HOH HOH . C 3 HOH A 99 499 46 HOH HOH . C 3 HOH A 100 500 7 HOH HOH . C 3 HOH A 101 501 167 HOH HOH . C 3 HOH A 102 502 29 HOH HOH . C 3 HOH A 103 503 104 HOH HOH . C 3 HOH A 104 504 66 HOH HOH . C 3 HOH A 105 505 57 HOH HOH . C 3 HOH A 106 506 76 HOH HOH . C 3 HOH A 107 507 51 HOH HOH . C 3 HOH A 108 508 131 HOH HOH . C 3 HOH A 109 509 64 HOH HOH . C 3 HOH A 110 510 3 HOH HOH . C 3 HOH A 111 511 130 HOH HOH . C 3 HOH A 112 512 17 HOH HOH . C 3 HOH A 113 513 43 HOH HOH . C 3 HOH A 114 514 99 HOH HOH . C 3 HOH A 115 515 272 HOH HOH . C 3 HOH A 116 516 170 HOH HOH . C 3 HOH A 117 517 26 HOH HOH . C 3 HOH A 118 518 24 HOH HOH . C 3 HOH A 119 519 101 HOH HOH . C 3 HOH A 120 520 22 HOH HOH . C 3 HOH A 121 521 221 HOH HOH . C 3 HOH A 122 522 42 HOH HOH . C 3 HOH A 123 523 5 HOH HOH . C 3 HOH A 124 524 147 HOH HOH . C 3 HOH A 125 525 33 HOH HOH . C 3 HOH A 126 526 6 HOH HOH . C 3 HOH A 127 527 21 HOH HOH . C 3 HOH A 128 528 291 HOH HOH . C 3 HOH A 129 529 270 HOH HOH . C 3 HOH A 130 530 3 HOH HOH . C 3 HOH A 131 531 52 HOH HOH . C 3 HOH A 132 532 33 HOH HOH . C 3 HOH A 133 533 43 HOH HOH . C 3 HOH A 134 534 27 HOH HOH . C 3 HOH A 135 535 80 HOH HOH . C 3 HOH A 136 536 70 HOH HOH . C 3 HOH A 137 537 18 HOH HOH . C 3 HOH A 138 538 141 HOH HOH . C 3 HOH A 139 539 78 HOH HOH . C 3 HOH A 140 540 153 HOH HOH . C 3 HOH A 141 541 63 HOH HOH . C 3 HOH A 142 542 9 HOH HOH . C 3 HOH A 143 543 257 HOH HOH . C 3 HOH A 144 544 82 HOH HOH . C 3 HOH A 145 545 20 HOH HOH . C 3 HOH A 146 546 40 HOH HOH . C 3 HOH A 147 547 161 HOH HOH . C 3 HOH A 148 548 188 HOH HOH . C 3 HOH A 149 549 184 HOH HOH . C 3 HOH A 150 550 70 HOH HOH . C 3 HOH A 151 551 100 HOH HOH . C 3 HOH A 152 552 194 HOH HOH . C 3 HOH A 153 553 163 HOH HOH . C 3 HOH A 154 554 252 HOH HOH . C 3 HOH A 155 555 279 HOH HOH . C 3 HOH A 156 556 261 HOH HOH . C 3 HOH A 157 557 34 HOH HOH . C 3 HOH A 158 558 273 HOH HOH . C 3 HOH A 159 559 61 HOH HOH . C 3 HOH A 160 560 155 HOH HOH . C 3 HOH A 161 561 88 HOH HOH . C 3 HOH A 162 562 244 HOH HOH . C 3 HOH A 163 563 154 HOH HOH . C 3 HOH A 164 564 177 HOH HOH . C 3 HOH A 165 565 191 HOH HOH . C 3 HOH A 166 566 268 HOH HOH . C 3 HOH A 167 567 274 HOH HOH . C 3 HOH A 168 568 61 HOH HOH . C 3 HOH A 169 569 180 HOH HOH . C 3 HOH A 170 570 260 HOH HOH . C 3 HOH A 171 571 114 HOH HOH . C 3 HOH A 172 572 149 HOH HOH . C 3 HOH A 173 573 262 HOH HOH . C 3 HOH A 174 574 180 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 I73 . . . B 2 -0.631 -9.564 -22.167 1 30.45 ? O1 I73 301 A 1 HETATM 2 C C42 I73 . . . B 2 -0.66 -8.95 -23.511 1 31 ? C42 I73 301 A 1 HETATM 3 C C43 I73 . . . B 2 -1.608 -7.754 -23.466 1 30.49 ? C43 I73 301 A 1 HETATM 4 N N44 I73 . . . B 2 -2.986 -8.218 -23.205 1 28.55 ? N44 I73 301 A 1 HETATM 5 C C45 I73 . . . B 2 -3.551 -9.197 -24.132 1 27.5 ? C45 I73 301 A 1 HETATM 6 C C46 I73 . . . B 2 -2.566 -10.38 -24.332 1 26.53 ? C46 I73 301 A 1 HETATM 7 C C41 I73 . . . B 2 -1.113 -9.956 -24.596 1 28.12 ? C41 I73 301 A 1 HETATM 8 C C40 I73 . . . B 2 -1.053 -9.45 -26.055 1 28.73 ? C40 I73 301 A 1 HETATM 9 N N18 I73 . . . B 2 0.279 -9.218 -26.627 1 26.3 ? N18 I73 301 A 1 HETATM 10 C C5 I73 . . . B 2 0.652 -8.042 -27.214 1 26.45 ? C5 I73 301 A 1 HETATM 11 C C4 I73 . . . B 2 1.889 -7.889 -27.862 1 28.03 ? C4 I73 301 A 1 HETATM 12 C C3 I73 . . . B 2 2.307 -6.665 -28.475 1 27.81 ? C3 I73 301 A 1 HETATM 13 N N2 I73 . . . B 2 1.458 -5.628 -28.436 1 26.34 ? N2 I73 301 A 1 HETATM 14 N N1 I73 . . . B 2 1.616 -4.314 -28.952 1 21.07 ? N1 I73 301 A 1 HETATM 15 C C9 I73 . . . B 2 0.466 -3.634 -28.601 1 18.88 ? C9 I73 301 A 1 HETATM 16 C C8 I73 . . . B 2 -0.32 -4.608 -27.945 1 19.18 ? C8 I73 301 A 1 HETATM 17 C C26 I73 . . . B 2 -1.613 -4.654 -27.189 1 22.43 ? C26 I73 301 A 1 HETATM 18 C C28 I73 . . . B 2 -1.665 -3.797 -25.914 1 17.23 ? C28 I73 301 A 1 HETATM 19 C C27 I73 . . . B 2 -2.932 -4.99 -27.883 1 18.43 ? C27 I73 301 A 1 HETATM 20 C C7 I73 . . . B 2 0.308 -5.809 -27.808 1 24.43 ? C7 I73 301 A 1 HETATM 21 N N6 I73 . . . B 2 -0.165 -6.957 -27.193 1 25.43 ? N6 I73 301 A 1 HETATM 22 N N10 I73 . . . B 2 3.514 -6.565 -29.087 1 26.07 ? N10 I73 301 A 1 HETATM 23 C C11 I73 . . . B 2 4.587 -7.52 -28.698 1 28.69 ? C11 I73 301 A 1 HETATM 24 C C12 I73 . . . B 2 4.702 -8.666 -29.708 1 30.23 ? C12 I73 301 A 1 HETATM 25 C C17 I73 . . . B 2 4.426 -9.985 -29.348 1 33.93 ? C17 I73 301 A 1 HETATM 26 C C16 I73 . . . B 2 4.519 -11.033 -30.294 1 35.51 ? C16 I73 301 A 1 HETATM 27 C C15 I73 . . . B 2 4.885 -10.749 -31.632 1 32.99 ? C15 I73 301 A 1 HETATM 28 C C14 I73 . . . B 2 5.146 -9.421 -31.978 1 33.29 ? C14 I73 301 A 1 HETATM 29 C C13 I73 . . . B 2 5.052 -8.403 -31.024 1 32.01 ? C13 I73 301 A 1 # _model_server_stats.io_time_ms 47 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 357 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 29 #