data_5JQ9
#
_model_server_result.job_id            HgGp_VHQ4E_yOE01R9yayQ 
_model_server_result.datetime_utc      '2025-06-28 09:43:49' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5jq9 
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_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":302}' 
#
_entry.id    5JQ9 
#
_exptl.entry_id    5JQ9 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
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_cell.angle_alpha         90 
_cell.angle_beta          89.78 
_cell.angle_gamma         90 
_cell.entry_id            5JQ9 
_cell.length_a            70.687 
_cell.length_b            49.897 
_cell.length_c            74.279 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5JQ9 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
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_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
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_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 135 n n 
C1 C2 EDO sing 136 n n 
C1 H11 EDO sing 137 n n 
C1 H12 EDO sing 138 n n 
O1 HO1 EDO sing 139 n n 
C2 O2 EDO sing 140 n n 
C2 H21 EDO sing 141 n n 
C2 H22 EDO sing 142 n n 
O2 HO2 EDO sing 143 n n 
#
_atom_sites.entry_id                     5JQ9 
_atom_sites.fract_transf_matrix[1][1]    0.014147 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    -0.000053 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.020041 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013463 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 6MB A 1 301 1 6MB LEE . 
D 3 EDO A 1 302 1 EDO EDO . 
E 2 6MB B 1 301 2 6MB LEE . 
F 4 HOH A 1 401 22 HOH HOH . 
F 4 HOH A 2 402 25 HOH HOH . 
F 4 HOH A 3 403 27 HOH HOH . 
F 4 HOH A 4 404 46 HOH HOH . 
F 4 HOH A 5 405 83 HOH HOH . 
F 4 HOH A 6 406 74 HOH HOH . 
F 4 HOH A 7 407 44 HOH HOH . 
F 4 HOH A 8 408 66 HOH HOH . 
F 4 HOH A 9 409 33 HOH HOH . 
F 4 HOH A 10 410 47 HOH HOH . 
F 4 HOH A 11 411 2 HOH HOH . 
F 4 HOH A 12 412 29 HOH HOH . 
F 4 HOH A 13 413 16 HOH HOH . 
F 4 HOH A 14 414 39 HOH HOH . 
F 4 HOH A 15 415 45 HOH HOH . 
F 4 HOH A 16 416 58 HOH HOH . 
F 4 HOH A 17 417 38 HOH HOH . 
F 4 HOH A 18 418 5 HOH HOH . 
F 4 HOH A 19 419 7 HOH HOH . 
F 4 HOH A 20 420 81 HOH HOH . 
F 4 HOH A 21 421 23 HOH HOH . 
F 4 HOH A 22 422 32 HOH HOH . 
F 4 HOH A 23 423 12 HOH HOH . 
F 4 HOH A 24 424 9 HOH HOH . 
F 4 HOH A 25 425 17 HOH HOH . 
F 4 HOH A 26 426 61 HOH HOH . 
F 4 HOH A 27 427 77 HOH HOH . 
F 4 HOH A 28 428 34 HOH HOH . 
F 4 HOH A 29 429 15 HOH HOH . 
F 4 HOH A 30 430 78 HOH HOH . 
F 4 HOH A 31 431 14 HOH HOH . 
F 4 HOH A 32 432 62 HOH HOH . 
F 4 HOH A 33 433 11 HOH HOH . 
F 4 HOH A 34 434 59 HOH HOH . 
F 4 HOH A 35 435 70 HOH HOH . 
F 4 HOH A 36 436 20 HOH HOH . 
F 4 HOH A 37 437 18 HOH HOH . 
F 4 HOH A 38 438 35 HOH HOH . 
F 4 HOH A 39 439 48 HOH HOH . 
F 4 HOH A 40 440 111 HOH HOH . 
F 4 HOH A 41 441 67 HOH HOH . 
F 4 HOH A 42 442 4 HOH HOH . 
F 4 HOH A 43 443 68 HOH HOH . 
F 4 HOH A 44 444 30 HOH HOH . 
F 4 HOH A 45 445 13 HOH HOH . 
F 4 HOH A 46 446 91 HOH HOH . 
F 4 HOH A 47 447 84 HOH HOH . 
F 4 HOH A 48 448 108 HOH HOH . 
F 4 HOH A 49 449 60 HOH HOH . 
F 4 HOH A 50 450 73 HOH HOH . 
F 4 HOH A 51 451 36 HOH HOH . 
F 4 HOH A 52 452 31 HOH HOH . 
F 4 HOH A 53 453 37 HOH HOH . 
F 4 HOH A 54 454 64 HOH HOH . 
F 4 HOH A 55 455 26 HOH HOH . 
F 4 HOH A 56 456 75 HOH HOH . 
F 4 HOH A 57 457 82 HOH HOH . 
F 4 HOH A 58 458 112 HOH HOH . 
F 4 HOH A 59 459 54 HOH HOH . 
F 4 HOH A 60 460 52 HOH HOH . 
F 4 HOH A 61 461 51 HOH HOH . 
F 4 HOH A 62 462 85 HOH HOH . 
F 4 HOH A 63 463 87 HOH HOH . 
F 4 HOH A 64 464 80 HOH HOH . 
F 4 HOH A 65 465 89 HOH HOH . 
F 4 HOH A 66 466 50 HOH HOH . 
F 4 HOH A 67 467 49 HOH HOH . 
F 4 HOH A 68 468 107 HOH HOH . 
F 4 HOH A 69 469 109 HOH HOH . 
F 4 HOH A 70 470 88 HOH HOH . 
G 4 HOH B 1 401 94 HOH HOH . 
G 4 HOH B 2 402 96 HOH HOH . 
G 4 HOH B 3 403 95 HOH HOH . 
G 4 HOH B 4 404 103 HOH HOH . 
G 4 HOH B 5 405 106 HOH HOH . 
G 4 HOH B 6 406 21 HOH HOH . 
G 4 HOH B 7 407 42 HOH HOH . 
G 4 HOH B 8 408 6 HOH HOH . 
G 4 HOH B 9 409 100 HOH HOH . 
G 4 HOH B 10 410 40 HOH HOH . 
G 4 HOH B 11 411 55 HOH HOH . 
G 4 HOH B 12 412 8 HOH HOH . 
G 4 HOH B 13 413 86 HOH HOH . 
G 4 HOH B 14 414 43 HOH HOH . 
G 4 HOH B 15 415 41 HOH HOH . 
G 4 HOH B 16 416 93 HOH HOH . 
G 4 HOH B 17 417 71 HOH HOH . 
G 4 HOH B 18 418 56 HOH HOH . 
G 4 HOH B 19 419 72 HOH HOH . 
G 4 HOH B 20 420 65 HOH HOH . 
G 4 HOH B 21 421 53 HOH HOH . 
G 4 HOH B 22 422 90 HOH HOH . 
G 4 HOH B 23 423 63 HOH HOH . 
G 4 HOH B 24 424 57 HOH HOH . 
G 4 HOH B 25 425 105 HOH HOH . 
G 4 HOH B 26 426 99 HOH HOH . 
G 4 HOH B 27 427 104 HOH HOH . 
G 4 HOH B 28 428 110 HOH HOH . 
G 4 HOH B 29 429 98 HOH HOH . 
G 4 HOH B 30 430 101 HOH HOH . 
G 4 HOH B 31 431 97 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . D 3 27.334 4.179 110.968 1 41.85 ? C1 EDO 302 A 1 
HETATM 2 O O1 EDO . . . D 3 27.313 3.498 109.71 1 40.73 ? O1 EDO 302 A 1 
HETATM 3 C C2 EDO . . . D 3 25.952 4.09 111.601 1 46.1 ? C2 EDO 302 A 1 
HETATM 4 O O2 EDO . . . D 3 25.882 4.969 112.728 1 46.75 ? O2 EDO 302 A 1 
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_model_server_stats.io_time_ms              0 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    24 
_model_server_stats.query_time_ms           306 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           4 
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