data_5JQB # _model_server_result.job_id iORgbbMQlQhVLjyxJ1DWqw _model_server_result.datetime_utc '2024-10-14 05:26:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5jqb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":706}' # _entry.id 5JQB # _exptl.entry_id 5JQB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 206.281 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description IBUPROFEN _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5JQB _cell.length_a 113.76 _cell.length_b 113.76 _cell.length_c 306.15 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5JQB _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_565 -y,x-y+1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 -56.88 98.51905 0 3 'crystal symmetry operation' 3_455 -x+y-1,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -113.76 0 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id M _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 3 3 2 BMA NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n C NAG 1 C 1 NAG D 621 NAG 3 n C NAG 2 C 2 NAG D 622 NAG 3 n C BMA 3 C 3 BMA D 623 BMA # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 26 A CYS 53 1_555 B SG CYS 108 B CYS 609 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf2 A SG CYS 81 A CYS 108 1_555 A SG CYS 108 A CYS 135 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf3 A SG CYS 94 A CYS 121 1_555 A SG CYS 120 A CYS 147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf4 B SG CYS 10 B CYS 511 1_555 B SG CYS 55 B CYS 556 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? disulf ? disulf5 B SG CYS 100 B CYS 601 1_555 B SG CYS 107 B CYS 608 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? covale ? covale1 A ND2 ASN 201 A ASN 228 1_555 E C1 NAG . A NAG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? covale ? covale2 A ND2 ASN 211 A ASN 238 1_555 F C1 NAG . A NAG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale3 A ND2 ASN 230 A ASN 257 1_555 D C1 NAG . A NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale4 A ND2 ASN 241 A ASN 268 1_555 G C1 NAG . A NAG 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? covale ? covale5 B ND2 ASN 62 B ASN 563 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale6 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale7 C O4 NAG . C NAG 2 1_555 C C1 BMA . C BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? # _chem_comp.formula 'C13 H18 O2' _chem_comp.formula_weight 206.281 _chem_comp.id IBP _chem_comp.mon_nstd_flag . _chem_comp.name IBUPROFEN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '2-(4-ISOBUTYLPHENYL)PROPIONIC ACID' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C6 IBP sing 189 n n C1 O1 IBP sing 190 n n C1 O2 IBP doub 191 n n C2 C3 IBP sing 192 n n C2 C11 IBP sing 193 n n C2 H21 IBP sing 194 n n C2 H22 IBP sing 195 n n C3 C4 IBP sing 196 n n C3 C5 IBP sing 197 n n C3 H31 IBP sing 198 n n C4 H41 IBP sing 199 n n C4 H42 IBP sing 200 n n C4 H43 IBP sing 201 n n C5 H51 IBP sing 202 n n C5 H52 IBP sing 203 n n C5 H53 IBP sing 204 n n C6 C7 IBP sing 205 n n C6 C8 IBP sing 206 n n C6 H61 IBP sing 207 n n C7 H71 IBP sing 208 n n C7 H72 IBP sing 209 n n C7 H73 IBP sing 210 n n C8 C9 IBP doub 211 n y C8 C13 IBP sing 212 n y C9 C10 IBP sing 213 n y C9 H91 IBP sing 214 n n C10 C11 IBP doub 215 n y C10 H101 IBP sing 216 n n C11 C12 IBP sing 217 n y C12 C13 IBP doub 218 n y C12 H121 IBP sing 219 n n C13 H131 IBP sing 220 n n O1 HO1 IBP sing 221 n n # _atom_sites.entry_id 5JQB _atom_sites.fract_transf_matrix[1][1] 0.00879 _atom_sites.fract_transf_matrix[1][2] 0.005075 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01015 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003266 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 NAG A 1 601 2 NAG NAG . E 4 NAG A 1 602 10 NAG NAG . F 4 NAG A 1 603 11 NAG NAG . G 4 NAG A 1 604 12 NAG NAG . H 5 GOL A 1 605 3 GOL GOL . I 5 GOL A 1 606 5 GOL GOL . J 5 GOL A 1 607 6 GOL GOL . K 5 GOL B 1 701 2 GOL GOL . L 5 GOL B 1 702 7 GOL GOL . M 6 IBP B 1 706 1 IBP IBP . N 7 HOH A 1 701 6 HOH HOH . N 7 HOH A 2 702 139 HOH HOH . N 7 HOH A 3 703 4 HOH HOH . N 7 HOH A 4 704 17 HOH HOH . N 7 HOH A 5 705 37 HOH HOH . N 7 HOH A 6 706 48 HOH HOH . N 7 HOH A 7 707 136 HOH HOH . N 7 HOH A 8 708 20 HOH HOH . N 7 HOH A 9 709 10 HOH HOH . N 7 HOH A 10 710 1 HOH HOH . N 7 HOH A 11 711 120 HOH HOH . N 7 HOH A 12 712 8 HOH HOH . N 7 HOH A 13 713 5 HOH HOH . N 7 HOH A 14 714 41 HOH HOH . N 7 HOH A 15 715 119 HOH HOH . N 7 HOH A 16 716 134 HOH HOH . N 7 HOH A 17 717 9 HOH HOH . N 7 HOH A 18 718 135 HOH HOH . N 7 HOH A 19 719 15 HOH HOH . N 7 HOH A 20 720 123 HOH HOH . N 7 HOH A 21 721 83 HOH HOH . N 7 HOH A 22 722 54 HOH HOH . N 7 HOH A 23 723 12 HOH HOH . N 7 HOH A 24 724 137 HOH HOH . N 7 HOH A 25 725 33 HOH HOH . N 7 HOH A 26 726 69 HOH HOH . N 7 HOH A 27 727 72 HOH HOH . N 7 HOH A 28 728 22 HOH HOH . N 7 HOH A 29 729 140 HOH HOH . N 7 HOH A 30 730 68 HOH HOH . N 7 HOH A 31 731 80 HOH HOH . N 7 HOH A 32 732 107 HOH HOH . N 7 HOH A 33 733 127 HOH HOH . N 7 HOH A 34 734 130 HOH HOH . N 7 HOH A 35 735 121 HOH HOH . N 7 HOH A 36 736 118 HOH HOH . N 7 HOH A 37 737 131 HOH HOH . N 7 HOH A 38 738 40 HOH HOH . N 7 HOH A 39 739 53 HOH HOH . N 7 HOH A 40 740 111 HOH HOH . O 7 HOH B 1 801 74 HOH HOH . O 7 HOH B 2 802 104 HOH HOH . O 7 HOH B 3 803 52 HOH HOH . O 7 HOH B 4 804 59 HOH HOH . O 7 HOH B 5 805 18 HOH HOH . O 7 HOH B 6 806 3 HOH HOH . O 7 HOH B 7 807 87 HOH HOH . O 7 HOH B 8 808 113 HOH HOH . O 7 HOH B 9 809 19 HOH HOH . O 7 HOH B 10 810 77 HOH HOH . O 7 HOH B 11 811 65 HOH HOH . O 7 HOH B 12 812 102 HOH HOH . O 7 HOH B 13 813 64 HOH HOH . O 7 HOH B 14 814 55 HOH HOH . O 7 HOH B 15 815 144 HOH HOH . O 7 HOH B 16 816 21 HOH HOH . O 7 HOH B 17 817 143 HOH HOH . O 7 HOH B 18 818 24 HOH HOH . O 7 HOH B 19 819 133 HOH HOH . O 7 HOH B 20 820 27 HOH HOH . O 7 HOH B 21 821 128 HOH HOH . O 7 HOH B 22 822 108 HOH HOH . O 7 HOH B 23 823 84 HOH HOH . O 7 HOH B 24 824 126 HOH HOH . O 7 HOH B 25 825 129 HOH HOH . O 7 HOH B 26 826 49 HOH HOH . O 7 HOH B 27 827 99 HOH HOH . O 7 HOH B 28 828 105 HOH HOH . O 7 HOH B 29 829 36 HOH HOH . O 7 HOH B 30 830 60 HOH HOH . O 7 HOH B 31 831 141 HOH HOH . O 7 HOH B 32 832 63 HOH HOH . O 7 HOH B 33 833 142 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 IBP . . . M 6 -44.235 15.902 -8.156 1 103.7 ? C1 IBP 706 B 1 HETATM 2 C C2 IBP . . . M 6 -47.918 11.112 -5.821 1 88.85 ? C2 IBP 706 B 1 HETATM 3 C C3 IBP . . . M 6 -47.909 10.831 -4.315 1 86.24 ? C3 IBP 706 B 1 HETATM 4 C C4 IBP . . . M 6 -49.176 10.084 -3.911 1 85.08 ? C4 IBP 706 B 1 HETATM 5 C C5 IBP . . . M 6 -46.682 10.032 -3.892 1 85.95 ? C5 IBP 706 B 1 HETATM 6 C C6 IBP . . . M 6 -43.771 14.471 -8.168 1 99.72 ? C6 IBP 706 B 1 HETATM 7 C C7 IBP . . . M 6 -42.421 14.278 -7.461 1 99.62 ? C7 IBP 706 B 1 HETATM 8 C C8 IBP . . . M 6 -44.824 13.626 -7.545 1 96.86 ? C8 IBP 706 B 1 HETATM 9 C C9 IBP . . . M 6 -45.595 12.771 -8.334 1 93.62 ? C9 IBP 706 B 1 HETATM 10 C C10 IBP . . . M 6 -46.583 11.978 -7.746 1 93.6 ? C10 IBP 706 B 1 HETATM 11 C C11 IBP . . . M 6 -46.823 12.02 -6.367 1 91.6 ? C11 IBP 706 B 1 HETATM 12 C C12 IBP . . . M 6 -46.05 12.885 -5.581 1 94.55 ? C12 IBP 706 B 1 HETATM 13 C C13 IBP . . . M 6 -45.061 13.677 -6.167 1 97.05 ? C13 IBP 706 B 1 HETATM 14 O O1 IBP . . . M 6 -43.793 16.711 -7.307 1 107.63 ? O1 IBP 706 B 1 HETATM 15 O O2 IBP . . . M 6 -45.075 16.228 -9.021 1 106.32 ? O2 IBP 706 B 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 15 #