data_5JQS # _model_server_result.job_id o_mVK1obgteCp35DT8oaig _model_server_result.datetime_utc '2024-12-11 00:40:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5jqs # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 5JQS # _exptl.entry_id 5JQS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 57.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description prop-2-en-1-amine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5JQS _cell.length_a 82.336 _cell.length_b 82.336 _cell.length_c 332.464 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5JQS _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 42 A CYS 137 1_555 C C2 AYE . A AYE 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.668 ? covale ? covale2 C N1 AYE . A AYE 401 1_555 B C GLY 75 D GLY 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.552 ? # _chem_comp.formula 'C3 H7 N' _chem_comp.formula_weight 57.094 _chem_comp.id AYE _chem_comp.mon_nstd_flag . _chem_comp.name prop-2-en-1-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ALLYLAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 C3 AYE doub 70 n n C2 C1 AYE sing 71 n n C1 N1 AYE sing 72 n n C2 H2 AYE sing 73 n n C3 H3 AYE sing 74 n n C3 H3A AYE sing 75 n n C1 H1 AYE sing 76 n n C1 H1A AYE sing 77 n n N1 HN1 AYE sing 78 n n N1 HN1A AYE sing 79 n n # _atom_sites.entry_id 5JQS _atom_sites.fract_transf_matrix[1][1] 0.012145 _atom_sites.fract_transf_matrix[1][2] 0.007012 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014024 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003008 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 AYE A 1 401 76 AYE AYE . D 4 SO4 A 1 402 2 SO4 SO4 . E 4 SO4 A 1 403 3 SO4 SO4 . F 5 CL A 1 404 1 CL CL . G 6 DIO A 1 405 1 DIO DIO . H 4 SO4 D 1 101 1 SO4 SO4 . I 7 HOH A 1 501 49 HOH HOH . I 7 HOH A 2 502 21 HOH HOH . I 7 HOH A 3 503 28 HOH HOH . I 7 HOH A 4 504 25 HOH HOH . I 7 HOH A 5 505 53 HOH HOH . I 7 HOH A 6 506 34 HOH HOH . I 7 HOH A 7 507 5 HOH HOH . I 7 HOH A 8 508 16 HOH HOH . I 7 HOH A 9 509 48 HOH HOH . I 7 HOH A 10 510 44 HOH HOH . I 7 HOH A 11 511 41 HOH HOH . I 7 HOH A 12 512 42 HOH HOH . I 7 HOH A 13 513 47 HOH HOH . I 7 HOH A 14 514 6 HOH HOH . I 7 HOH A 15 515 1 HOH HOH . I 7 HOH A 16 516 13 HOH HOH . I 7 HOH A 17 517 31 HOH HOH . I 7 HOH A 18 518 52 HOH HOH . I 7 HOH A 19 519 24 HOH HOH . I 7 HOH A 20 520 50 HOH HOH . I 7 HOH A 21 521 27 HOH HOH . I 7 HOH A 22 522 45 HOH HOH . I 7 HOH A 23 523 3 HOH HOH . I 7 HOH A 24 524 8 HOH HOH . I 7 HOH A 25 525 51 HOH HOH . I 7 HOH A 26 526 35 HOH HOH . I 7 HOH A 27 527 43 HOH HOH . I 7 HOH A 28 528 15 HOH HOH . I 7 HOH A 29 529 4 HOH HOH . I 7 HOH A 30 530 14 HOH HOH . I 7 HOH A 31 531 37 HOH HOH . I 7 HOH A 32 532 39 HOH HOH . I 7 HOH A 33 533 20 HOH HOH . I 7 HOH A 34 534 7 HOH HOH . I 7 HOH A 35 535 11 HOH HOH . I 7 HOH A 36 536 9 HOH HOH . I 7 HOH A 37 537 40 HOH HOH . I 7 HOH A 38 538 38 HOH HOH . I 7 HOH A 39 539 30 HOH HOH . I 7 HOH A 40 540 22 HOH HOH . I 7 HOH A 41 541 17 HOH HOH . I 7 HOH A 42 542 18 HOH HOH . I 7 HOH A 43 543 12 HOH HOH . I 7 HOH A 44 544 23 HOH HOH . I 7 HOH A 45 545 19 HOH HOH . I 7 HOH A 46 546 2 HOH HOH . I 7 HOH A 47 547 29 HOH HOH . I 7 HOH A 48 548 10 HOH HOH . I 7 HOH A 49 549 26 HOH HOH . I 7 HOH A 50 550 46 HOH HOH . I 7 HOH A 51 551 36 HOH HOH . J 7 HOH D 1 201 32 HOH HOH . J 7 HOH D 2 202 33 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 AYE . . . C 3 56.573 122.077 15.87 1 76.21 ? C2 AYE 401 A 1 HETATM 2 C C3 AYE . . . C 3 57.462 122.15 16.843 1 81.72 ? C3 AYE 401 A 1 HETATM 3 C C1 AYE . . . C 3 56.849 121.22 14.658 1 78.45 ? C1 AYE 401 A 1 HETATM 4 N N1 AYE . . . C 3 55.998 120.047 14.628 1 69.6 ? N1 AYE 401 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 313 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 4 #