data_5JQX # _model_server_result.job_id rbohk2jjsN1EY-CjpfeE4g _model_server_result.datetime_utc '2025-01-09 22:06:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5jqx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":401}' # _entry.id 5JQX # _exptl.entry_id 5JQX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 186.057 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '3-PHOSPHOGLYCERIC ACID' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90.34 _cell.angle_gamma 90 _cell.entry_id 5JQX _cell.length_a 138.668 _cell.length_b 128.18 _cell.length_c 138.444 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5JQX _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,I,J 1 1 C,G,K 2 1,2 D,H,L 3 1,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_855 -x+3,y,-z -1 0 0 0 1 0 0 0 -1 416.004 0 0 3 'crystal symmetry operation' 2_756 -x+2,y,-z+1 -1 0 0 0 1 0 0 0 -1 276.514462 0 138.441562 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # _chem_comp.formula 'C3 H7 O7 P' _chem_comp.formula_weight 186.057 _chem_comp.id 3PG _chem_comp.mon_nstd_flag . _chem_comp.name '3-PHOSPHOGLYCERIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 3PG doub 1 n n C1 O2 3PG sing 2 n n C1 C2 3PG sing 3 n n O2 HO2 3PG sing 4 n n C2 O3 3PG sing 5 n n C2 C3 3PG sing 6 n n C2 H2 3PG sing 7 n n O3 HO3 3PG sing 8 n n C3 O1P 3PG sing 9 n n C3 H31 3PG sing 10 n n C3 H32 3PG sing 11 n n O1P P 3PG sing 12 n n P O2P 3PG doub 13 n n P O3P 3PG sing 14 n n P O4P 3PG sing 15 n n O3P HOP3 3PG sing 16 n n O4P HOP4 3PG sing 17 n n # _atom_sites.entry_id 5JQX _atom_sites.fract_transf_matrix[1][1] 0.007211 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000043 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007802 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007223 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 3PG A 1 401 323 3PG 3PG . F 2 3PG B 1 401 323 3PG 3PG . G 2 3PG C 1 401 323 3PG 3PG . H 2 3PG D 1 401 323 3PG 3PG . I 3 HOH A 1 501 346 HOH HOH . I 3 HOH A 2 502 342 HOH HOH . I 3 HOH A 3 503 325 HOH HOH . I 3 HOH A 4 504 343 HOH HOH . I 3 HOH A 5 505 347 HOH HOH . I 3 HOH A 6 506 333 HOH HOH . I 3 HOH A 7 507 348 HOH HOH . I 3 HOH A 8 508 328 HOH HOH . I 3 HOH A 9 509 334 HOH HOH . I 3 HOH A 10 510 326 HOH HOH . I 3 HOH A 11 511 337 HOH HOH . I 3 HOH A 12 512 338 HOH HOH . I 3 HOH A 13 513 327 HOH HOH . I 3 HOH A 14 514 344 HOH HOH . I 3 HOH A 15 515 340 HOH HOH . I 3 HOH A 16 516 332 HOH HOH . I 3 HOH A 17 517 335 HOH HOH . I 3 HOH A 18 518 329 HOH HOH . I 3 HOH A 19 519 341 HOH HOH . I 3 HOH A 20 520 339 HOH HOH . I 3 HOH A 21 521 336 HOH HOH . I 3 HOH A 22 522 345 HOH HOH . I 3 HOH A 23 523 331 HOH HOH . I 3 HOH A 24 524 330 HOH HOH . J 3 HOH B 1 501 337 HOH HOH . J 3 HOH B 2 502 336 HOH HOH . J 3 HOH B 3 503 345 HOH HOH . J 3 HOH B 4 504 333 HOH HOH . J 3 HOH B 5 505 327 HOH HOH . J 3 HOH B 6 506 353 HOH HOH . J 3 HOH B 7 507 334 HOH HOH . J 3 HOH B 8 508 358 HOH HOH . J 3 HOH B 9 509 346 HOH HOH . J 3 HOH B 10 510 355 HOH HOH . J 3 HOH B 11 511 349 HOH HOH . J 3 HOH B 12 512 338 HOH HOH . J 3 HOH B 13 513 344 HOH HOH . J 3 HOH B 14 514 356 HOH HOH . J 3 HOH B 15 515 331 HOH HOH . J 3 HOH B 16 516 354 HOH HOH . J 3 HOH B 17 517 326 HOH HOH . J 3 HOH B 18 518 351 HOH HOH . J 3 HOH B 19 519 332 HOH HOH . J 3 HOH B 20 520 343 HOH HOH . J 3 HOH B 21 521 330 HOH HOH . J 3 HOH B 22 522 352 HOH HOH . J 3 HOH B 23 523 335 HOH HOH . J 3 HOH B 24 524 325 HOH HOH . J 3 HOH B 25 525 340 HOH HOH . J 3 HOH B 26 526 357 HOH HOH . J 3 HOH B 27 527 329 HOH HOH . J 3 HOH B 28 528 328 HOH HOH . J 3 HOH B 29 529 339 HOH HOH . J 3 HOH B 30 530 342 HOH HOH . J 3 HOH B 31 531 347 HOH HOH . J 3 HOH B 32 532 341 HOH HOH . J 3 HOH B 33 533 350 HOH HOH . J 3 HOH B 34 534 348 HOH HOH . K 3 HOH C 1 501 341 HOH HOH . K 3 HOH C 2 502 331 HOH HOH . K 3 HOH C 3 503 332 HOH HOH . K 3 HOH C 4 504 337 HOH HOH . K 3 HOH C 5 505 334 HOH HOH . K 3 HOH C 6 506 327 HOH HOH . K 3 HOH C 7 507 342 HOH HOH . K 3 HOH C 8 508 333 HOH HOH . K 3 HOH C 9 509 346 HOH HOH . K 3 HOH C 10 510 343 HOH HOH . K 3 HOH C 11 511 335 HOH HOH . K 3 HOH C 12 512 326 HOH HOH . K 3 HOH C 13 513 340 HOH HOH . K 3 HOH C 14 514 328 HOH HOH . K 3 HOH C 15 515 338 HOH HOH . K 3 HOH C 16 516 344 HOH HOH . K 3 HOH C 17 517 330 HOH HOH . K 3 HOH C 18 518 325 HOH HOH . K 3 HOH C 19 519 336 HOH HOH . K 3 HOH C 20 520 329 HOH HOH . K 3 HOH C 21 521 339 HOH HOH . K 3 HOH C 22 522 345 HOH HOH . L 3 HOH D 1 501 337 HOH HOH . L 3 HOH D 2 502 1 HOH HOH . L 3 HOH D 3 503 356 HOH HOH . L 3 HOH D 4 504 347 HOH HOH . L 3 HOH D 5 505 340 HOH HOH . L 3 HOH D 6 506 354 HOH HOH . L 3 HOH D 7 507 330 HOH HOH . L 3 HOH D 8 508 336 HOH HOH . L 3 HOH D 9 509 350 HOH HOH . L 3 HOH D 10 510 343 HOH HOH . L 3 HOH D 11 511 339 HOH HOH . L 3 HOH D 12 512 332 HOH HOH . L 3 HOH D 13 513 348 HOH HOH . L 3 HOH D 14 514 353 HOH HOH . L 3 HOH D 15 515 335 HOH HOH . L 3 HOH D 16 516 327 HOH HOH . L 3 HOH D 17 517 331 HOH HOH . L 3 HOH D 18 518 352 HOH HOH . L 3 HOH D 19 519 346 HOH HOH . L 3 HOH D 20 520 329 HOH HOH . L 3 HOH D 21 521 325 HOH HOH . L 3 HOH D 22 522 328 HOH HOH . L 3 HOH D 23 523 333 HOH HOH . L 3 HOH D 24 524 341 HOH HOH . L 3 HOH D 25 525 334 HOH HOH . L 3 HOH D 26 526 345 HOH HOH . L 3 HOH D 27 527 326 HOH HOH . L 3 HOH D 28 528 338 HOH HOH . L 3 HOH D 29 529 342 HOH HOH . L 3 HOH D 30 530 344 HOH HOH . L 3 HOH D 31 531 349 HOH HOH . L 3 HOH D 32 532 355 HOH HOH . L 3 HOH D 33 533 351 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 3PG . . . E 2 163.47 28.677 30.074 1 86.4 ? C1 3PG 401 A 1 HETATM 2 O O1 3PG . . . E 2 162.745 28.338 29.101 1 81.43 ? O1 3PG 401 A 1 HETATM 3 O O2 3PG . . . E 2 164.687 28.357 30.093 1 79.8 ? O2 3PG 401 A 1 HETATM 4 C C2 3PG . . . E 2 162.875 29.469 31.218 1 90.01 ? C2 3PG 401 A 1 HETATM 5 O O3 3PG . . . E 2 161.515 29.133 31.359 1 93.08 ? O3 3PG 401 A 1 HETATM 6 C C3 3PG . . . E 2 163.001 30.948 30.933 1 96.98 ? C3 3PG 401 A 1 HETATM 7 O O1P 3PG . . . E 2 164.359 31.319 30.988 1 96.95 ? O1P 3PG 401 A 1 HETATM 8 P P 3PG . . . E 2 164.724 32.858 30.971 1 96.27 ? P 3PG 401 A 1 HETATM 9 O O2P 3PG . . . E 2 164.239 33.476 29.681 1 89.81 ? O2P 3PG 401 A 1 HETATM 10 O O3P 3PG . . . E 2 166.222 33.019 31.077 1 81.51 ? O3P 3PG 401 A 1 HETATM 11 O O4P 3PG . . . E 2 164.061 33.544 32.141 1 92.56 ? O4P 3PG 401 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 330 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 11 #