data_5JQY # _model_server_result.job_id azyPlSMw0pVJ062Hy9GQOg _model_server_result.datetime_utc '2024-11-30 01:23:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5jqy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":801}' # _entry.id 5JQY # _exptl.entry_id 5JQY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 54.938 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MANGANESE (II) ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5JQY _cell.length_a 50.17 _cell.length_b 89.54 _cell.length_c 123.55 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5JQY _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 312 A CYS 641 1_555 A SG CYS 319 A CYS 648 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf2 B SG CYS 16 B CYS 101 1_555 B SG CYS 25 B CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? metalc ? metalc1 A NE2 HIS 350 A HIS 679 1_555 C MN MN . A MN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? metalc ? metalc2 A NE2 HIS 396 A HIS 725 1_555 C MN MN . A MN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.242 ? metalc ? metalc3 C MN MN . A MN 801 1_555 D O2' OGA . A OGA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? metalc ? metalc4 C MN MN . A MN 801 1_555 D O2 OGA . A OGA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.127 ? metalc ? metalc5 C MN MN . A MN 801 1_555 F O HOH . A HOH 983 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.962 ? # _chem_comp.formula 'Mn 2' _chem_comp.formula_weight 54.938 _chem_comp.id MN _chem_comp.mon_nstd_flag . _chem_comp.name 'MANGANESE (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5JQY _atom_sites.fract_transf_matrix[1][1] 0.019932 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011168 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008094 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MN A 1 801 1 MN MN . D 4 OGA A 1 802 2 OGA OGA . E 5 ACT A 1 803 1 ACT ACT . F 6 HOH A 1 901 180 HOH HOH . F 6 HOH A 2 902 43 HOH HOH . F 6 HOH A 3 903 182 HOH HOH . F 6 HOH A 4 904 131 HOH HOH . F 6 HOH A 5 905 16 HOH HOH . F 6 HOH A 6 906 245 HOH HOH . F 6 HOH A 7 907 64 HOH HOH . F 6 HOH A 8 908 228 HOH HOH . F 6 HOH A 9 909 202 HOH HOH . F 6 HOH A 10 910 221 HOH HOH . F 6 HOH A 11 911 117 HOH HOH . F 6 HOH A 12 912 170 HOH HOH . F 6 HOH A 13 913 71 HOH HOH . F 6 HOH A 14 914 92 HOH HOH . F 6 HOH A 15 915 161 HOH HOH . F 6 HOH A 16 916 77 HOH HOH . F 6 HOH A 17 917 102 HOH HOH . F 6 HOH A 18 918 230 HOH HOH . F 6 HOH A 19 919 147 HOH HOH . F 6 HOH A 20 920 148 HOH HOH . F 6 HOH A 21 921 81 HOH HOH . F 6 HOH A 22 922 121 HOH HOH . F 6 HOH A 23 923 40 HOH HOH . F 6 HOH A 24 924 20 HOH HOH . F 6 HOH A 25 925 189 HOH HOH . F 6 HOH A 26 926 200 HOH HOH . F 6 HOH A 27 927 50 HOH HOH . F 6 HOH A 28 928 185 HOH HOH . F 6 HOH A 29 929 184 HOH HOH . F 6 HOH A 30 930 166 HOH HOH . F 6 HOH A 31 931 234 HOH HOH . F 6 HOH A 32 932 259 HOH HOH . F 6 HOH A 33 933 10 HOH HOH . F 6 HOH A 34 934 17 HOH HOH . F 6 HOH A 35 935 225 HOH HOH . F 6 HOH A 36 936 100 HOH HOH . F 6 HOH A 37 937 34 HOH HOH . F 6 HOH A 38 938 35 HOH HOH . F 6 HOH A 39 939 60 HOH HOH . F 6 HOH A 40 940 26 HOH HOH . F 6 HOH A 41 941 6 HOH HOH . F 6 HOH A 42 942 51 HOH HOH . F 6 HOH A 43 943 237 HOH HOH . F 6 HOH A 44 944 137 HOH HOH . F 6 HOH A 45 945 84 HOH HOH . F 6 HOH A 46 946 1 HOH HOH . F 6 HOH A 47 947 30 HOH HOH . F 6 HOH A 48 948 113 HOH HOH . F 6 HOH A 49 949 195 HOH HOH . F 6 HOH A 50 950 4 HOH HOH . F 6 HOH A 51 951 251 HOH HOH . F 6 HOH A 52 952 78 HOH HOH . F 6 HOH A 53 953 8 HOH HOH . F 6 HOH A 54 954 55 HOH HOH . F 6 HOH A 55 955 208 HOH HOH . F 6 HOH A 56 956 192 HOH HOH . F 6 HOH A 57 957 11 HOH HOH . F 6 HOH A 58 958 143 HOH HOH . F 6 HOH A 59 959 254 HOH HOH . F 6 HOH A 60 960 164 HOH HOH . F 6 HOH A 61 961 206 HOH HOH . F 6 HOH A 62 962 210 HOH HOH . F 6 HOH A 63 963 98 HOH HOH . F 6 HOH A 64 964 46 HOH HOH . F 6 HOH A 65 965 227 HOH HOH . F 6 HOH A 66 966 52 HOH HOH . F 6 HOH A 67 967 37 HOH HOH . F 6 HOH A 68 968 86 HOH HOH . F 6 HOH A 69 969 204 HOH HOH . F 6 HOH A 70 970 267 HOH HOH . F 6 HOH A 71 971 165 HOH HOH . F 6 HOH A 72 972 252 HOH HOH . F 6 HOH A 73 973 151 HOH HOH . F 6 HOH A 74 974 118 HOH HOH . F 6 HOH A 75 975 157 HOH HOH . F 6 HOH A 76 976 21 HOH HOH . F 6 HOH A 77 977 69 HOH HOH . F 6 HOH A 78 978 2 HOH HOH . F 6 HOH A 79 979 233 HOH HOH . F 6 HOH A 80 980 99 HOH HOH . F 6 HOH A 81 981 47 HOH HOH . F 6 HOH A 82 982 260 HOH HOH . F 6 HOH A 83 983 22 HOH HOH . F 6 HOH A 84 984 48 HOH HOH . F 6 HOH A 85 985 108 HOH HOH . F 6 HOH A 86 986 178 HOH HOH . F 6 HOH A 87 987 232 HOH HOH . F 6 HOH A 88 988 265 HOH HOH . F 6 HOH A 89 989 90 HOH HOH . F 6 HOH A 90 990 198 HOH HOH . F 6 HOH A 91 991 120 HOH HOH . F 6 HOH A 92 992 32 HOH HOH . F 6 HOH A 93 993 186 HOH HOH . F 6 HOH A 94 994 65 HOH HOH . F 6 HOH A 95 995 266 HOH HOH . F 6 HOH A 96 996 13 HOH HOH . F 6 HOH A 97 997 176 HOH HOH . F 6 HOH A 98 998 15 HOH HOH . F 6 HOH A 99 999 146 HOH HOH . F 6 HOH A 100 1000 283 HOH HOH . F 6 HOH A 101 1001 38 HOH HOH . F 6 HOH A 102 1002 59 HOH HOH . F 6 HOH A 103 1003 18 HOH HOH . F 6 HOH A 104 1004 154 HOH HOH . F 6 HOH A 105 1005 94 HOH HOH . F 6 HOH A 106 1006 83 HOH HOH . F 6 HOH A 107 1007 9 HOH HOH . F 6 HOH A 108 1008 56 HOH HOH . F 6 HOH A 109 1009 126 HOH HOH . F 6 HOH A 110 1010 54 HOH HOH . F 6 HOH A 111 1011 262 HOH HOH . F 6 HOH A 112 1012 270 HOH HOH . F 6 HOH A 113 1013 19 HOH HOH . F 6 HOH A 114 1014 129 HOH HOH . F 6 HOH A 115 1015 66 HOH HOH . F 6 HOH A 116 1016 103 HOH HOH . F 6 HOH A 117 1017 105 HOH HOH . F 6 HOH A 118 1018 104 HOH HOH . F 6 HOH A 119 1019 172 HOH HOH . F 6 HOH A 120 1020 42 HOH HOH . F 6 HOH A 121 1021 122 HOH HOH . F 6 HOH A 122 1022 173 HOH HOH . F 6 HOH A 123 1023 264 HOH HOH . F 6 HOH A 124 1024 7 HOH HOH . F 6 HOH A 125 1025 49 HOH HOH . F 6 HOH A 126 1026 31 HOH HOH . F 6 HOH A 127 1027 236 HOH HOH . F 6 HOH A 128 1028 68 HOH HOH . F 6 HOH A 129 1029 215 HOH HOH . F 6 HOH A 130 1030 153 HOH HOH . F 6 HOH A 131 1031 278 HOH HOH . F 6 HOH A 132 1032 5 HOH HOH . F 6 HOH A 133 1033 242 HOH HOH . F 6 HOH A 134 1034 3 HOH HOH . F 6 HOH A 135 1035 96 HOH HOH . F 6 HOH A 136 1036 80 HOH HOH . F 6 HOH A 137 1037 93 HOH HOH . F 6 HOH A 138 1038 107 HOH HOH . F 6 HOH A 139 1039 142 HOH HOH . F 6 HOH A 140 1040 41 HOH HOH . F 6 HOH A 141 1041 88 HOH HOH . F 6 HOH A 142 1042 12 HOH HOH . F 6 HOH A 143 1043 223 HOH HOH . F 6 HOH A 144 1044 91 HOH HOH . F 6 HOH A 145 1045 116 HOH HOH . F 6 HOH A 146 1046 29 HOH HOH . F 6 HOH A 147 1047 191 HOH HOH . F 6 HOH A 148 1048 57 HOH HOH . F 6 HOH A 149 1049 111 HOH HOH . F 6 HOH A 150 1050 190 HOH HOH . F 6 HOH A 151 1051 145 HOH HOH . F 6 HOH A 152 1052 125 HOH HOH . F 6 HOH A 153 1053 168 HOH HOH . F 6 HOH A 154 1054 197 HOH HOH . F 6 HOH A 155 1055 226 HOH HOH . F 6 HOH A 156 1056 216 HOH HOH . F 6 HOH A 157 1057 24 HOH HOH . F 6 HOH A 158 1058 138 HOH HOH . F 6 HOH A 159 1059 25 HOH HOH . F 6 HOH A 160 1060 193 HOH HOH . F 6 HOH A 161 1061 124 HOH HOH . F 6 HOH A 162 1062 89 HOH HOH . F 6 HOH A 163 1063 263 HOH HOH . F 6 HOH A 164 1064 67 HOH HOH . F 6 HOH A 165 1065 174 HOH HOH . F 6 HOH A 166 1066 229 HOH HOH . F 6 HOH A 167 1067 274 HOH HOH . F 6 HOH A 168 1068 140 HOH HOH . F 6 HOH A 169 1069 217 HOH HOH . F 6 HOH A 170 1070 141 HOH HOH . F 6 HOH A 171 1071 135 HOH HOH . F 6 HOH A 172 1072 76 HOH HOH . F 6 HOH A 173 1073 14 HOH HOH . F 6 HOH A 174 1074 162 HOH HOH . F 6 HOH A 175 1075 250 HOH HOH . F 6 HOH A 176 1076 149 HOH HOH . F 6 HOH A 177 1077 275 HOH HOH . F 6 HOH A 178 1078 27 HOH HOH . F 6 HOH A 179 1079 63 HOH HOH . F 6 HOH A 180 1080 276 HOH HOH . F 6 HOH A 181 1081 45 HOH HOH . F 6 HOH A 182 1082 158 HOH HOH . F 6 HOH A 183 1083 123 HOH HOH . F 6 HOH A 184 1084 152 HOH HOH . F 6 HOH A 185 1085 101 HOH HOH . F 6 HOH A 186 1086 279 HOH HOH . F 6 HOH A 187 1087 58 HOH HOH . F 6 HOH A 188 1088 163 HOH HOH . F 6 HOH A 189 1089 253 HOH HOH . F 6 HOH A 190 1090 23 HOH HOH . F 6 HOH A 191 1091 205 HOH HOH . F 6 HOH A 192 1092 44 HOH HOH . F 6 HOH A 193 1093 255 HOH HOH . F 6 HOH A 194 1094 207 HOH HOH . F 6 HOH A 195 1095 235 HOH HOH . F 6 HOH A 196 1096 61 HOH HOH . F 6 HOH A 197 1097 224 HOH HOH . F 6 HOH A 198 1098 199 HOH HOH . F 6 HOH A 199 1099 238 HOH HOH . F 6 HOH A 200 1100 239 HOH HOH . F 6 HOH A 201 1101 133 HOH HOH . F 6 HOH A 202 1102 160 HOH HOH . F 6 HOH A 203 1103 130 HOH HOH . F 6 HOH A 204 1104 169 HOH HOH . F 6 HOH A 205 1105 114 HOH HOH . F 6 HOH A 206 1106 243 HOH HOH . F 6 HOH A 207 1107 179 HOH HOH . F 6 HOH A 208 1108 181 HOH HOH . F 6 HOH A 209 1109 150 HOH HOH . F 6 HOH A 210 1110 127 HOH HOH . F 6 HOH A 211 1111 214 HOH HOH . F 6 HOH A 212 1112 75 HOH HOH . F 6 HOH A 213 1113 246 HOH HOH . F 6 HOH A 214 1114 281 HOH HOH . F 6 HOH A 215 1115 188 HOH HOH . F 6 HOH A 216 1116 240 HOH HOH . F 6 HOH A 217 1117 39 HOH HOH . F 6 HOH A 218 1118 196 HOH HOH . F 6 HOH A 219 1119 187 HOH HOH . F 6 HOH A 220 1120 97 HOH HOH . F 6 HOH A 221 1121 175 HOH HOH . F 6 HOH A 222 1122 106 HOH HOH . F 6 HOH A 223 1123 112 HOH HOH . F 6 HOH A 224 1124 167 HOH HOH . F 6 HOH A 225 1125 119 HOH HOH . F 6 HOH A 226 1126 194 HOH HOH . F 6 HOH A 227 1127 212 HOH HOH . F 6 HOH A 228 1128 218 HOH HOH . F 6 HOH A 229 1129 62 HOH HOH . F 6 HOH A 230 1130 220 HOH HOH . F 6 HOH A 231 1131 241 HOH HOH . F 6 HOH A 232 1132 271 HOH HOH . F 6 HOH A 233 1133 273 HOH HOH . F 6 HOH A 234 1134 159 HOH HOH . F 6 HOH A 235 1135 95 HOH HOH . F 6 HOH A 236 1136 213 HOH HOH . F 6 HOH A 237 1137 257 HOH HOH . F 6 HOH A 238 1138 139 HOH HOH . F 6 HOH A 239 1139 231 HOH HOH . F 6 HOH A 240 1140 256 HOH HOH . F 6 HOH A 241 1141 73 HOH HOH . F 6 HOH A 242 1142 269 HOH HOH . F 6 HOH A 243 1143 272 HOH HOH . F 6 HOH A 244 1144 219 HOH HOH . F 6 HOH A 245 1145 72 HOH HOH . F 6 HOH A 246 1146 244 HOH HOH . F 6 HOH A 247 1147 33 HOH HOH . F 6 HOH A 248 1148 74 HOH HOH . F 6 HOH A 249 1149 277 HOH HOH . F 6 HOH A 250 1150 144 HOH HOH . F 6 HOH A 251 1151 82 HOH HOH . F 6 HOH A 252 1152 136 HOH HOH . F 6 HOH A 253 1153 211 HOH HOH . F 6 HOH A 254 1154 282 HOH HOH . F 6 HOH A 255 1155 36 HOH HOH . F 6 HOH A 256 1156 110 HOH HOH . F 6 HOH A 257 1157 128 HOH HOH . F 6 HOH A 258 1158 132 HOH HOH . F 6 HOH A 259 1159 177 HOH HOH . F 6 HOH A 260 1160 156 HOH HOH . F 6 HOH A 261 1161 70 HOH HOH . F 6 HOH A 262 1162 222 HOH HOH . F 6 HOH A 263 1163 209 HOH HOH . F 6 HOH A 264 1164 268 HOH HOH . F 6 HOH A 265 1165 203 HOH HOH . F 6 HOH A 266 1166 109 HOH HOH . F 6 HOH A 267 1167 134 HOH HOH . F 6 HOH A 268 1168 87 HOH HOH . F 6 HOH A 269 1169 248 HOH HOH . F 6 HOH A 270 1170 28 HOH HOH . F 6 HOH A 271 1171 280 HOH HOH . G 6 HOH B 1 201 261 HOH HOH . G 6 HOH B 2 202 249 HOH HOH . G 6 HOH B 3 203 115 HOH HOH . G 6 HOH B 4 204 183 HOH HOH . G 6 HOH B 5 205 155 HOH HOH . G 6 HOH B 6 206 79 HOH HOH . G 6 HOH B 7 207 53 HOH HOH . G 6 HOH B 8 208 85 HOH HOH . G 6 HOH B 9 209 171 HOH HOH . G 6 HOH B 10 210 201 HOH HOH . G 6 HOH B 11 211 247 HOH HOH . G 6 HOH B 12 212 258 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MN _atom_site.label_atom_id MN _atom_site.label_comp_id MN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 3 _atom_site.Cartn_x 59.539 _atom_site.Cartn_y 16.704 _atom_site.Cartn_z 18.665 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 48.5 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MN _atom_site.auth_comp_id MN _atom_site.auth_seq_id 801 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 70 _model_server_stats.parse_time_ms 36 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 353 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 1 #