data_5JR8 # _model_server_result.job_id z5A2b_EadadoxgV3TrwqXA _model_server_result.datetime_utc '2025-02-23 12:19:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5jr8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":202}' # _entry.id 5JR8 # _exptl.entry_id 5JR8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5JR8 _cell.length_a 138.97 _cell.length_b 138.97 _cell.length_c 64.87 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5JR8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 PISA monomeric 1 software_defined_assembly 3 PISA dimeric 2 software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,G 1 1 B,D,E,F,H 2 1 A,C,G 3 1 B,D,E,F,H 4 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_466 y-1,x+1,-z+1 0 1 0 1 0 0 0 0 -1 -138.97 138.97 64.87 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 76 A CYS 76 1_555 A SG CYS 175 A CYS 175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? disulf ? disulf2 A SG CYS 87 A CYS 87 1_555 B SG CYS 87 B CYS 87 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? disulf ? disulf3 B SG CYS 76 B CYS 76 1_555 B SG CYS 175 B CYS 175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.131 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 5JR8 _atom_sites.fract_transf_matrix[1][1] 0.007196 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007196 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015415 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PO4 A 1 201 1 PO4 PO4 . D 2 PO4 B 1 201 2 PO4 PO4 . E 3 GOL B 1 202 1 GOL GOL . F 2 PO4 B 1 203 1 PO4 PO4 . G 4 HOH A 1 301 3 HOH HOH . G 4 HOH A 2 302 46 HOH HOH . G 4 HOH A 3 303 5 HOH HOH . G 4 HOH A 4 304 6 HOH HOH . G 4 HOH A 5 305 28 HOH HOH . G 4 HOH A 6 306 48 HOH HOH . G 4 HOH A 7 307 13 HOH HOH . G 4 HOH A 8 308 31 HOH HOH . G 4 HOH A 9 309 16 HOH HOH . G 4 HOH A 10 310 37 HOH HOH . G 4 HOH A 11 311 20 HOH HOH . G 4 HOH A 12 312 59 HOH HOH . G 4 HOH A 13 313 35 HOH HOH . G 4 HOH A 14 314 45 HOH HOH . G 4 HOH A 15 315 34 HOH HOH . G 4 HOH A 16 316 54 HOH HOH . G 4 HOH A 17 317 50 HOH HOH . G 4 HOH A 18 318 38 HOH HOH . G 4 HOH A 19 319 47 HOH HOH . G 4 HOH A 20 320 18 HOH HOH . G 4 HOH A 21 321 24 HOH HOH . G 4 HOH A 22 322 2 HOH HOH . G 4 HOH A 23 323 43 HOH HOH . G 4 HOH A 24 324 33 HOH HOH . G 4 HOH A 25 325 32 HOH HOH . G 4 HOH A 26 326 51 HOH HOH . G 4 HOH A 27 327 26 HOH HOH . G 4 HOH A 28 328 52 HOH HOH . G 4 HOH A 29 329 10 HOH HOH . G 4 HOH A 30 330 44 HOH HOH . G 4 HOH A 31 331 42 HOH HOH . G 4 HOH A 32 332 21 HOH HOH . G 4 HOH A 33 333 23 HOH HOH . G 4 HOH A 34 334 39 HOH HOH . G 4 HOH A 35 335 9 HOH HOH . G 4 HOH A 36 336 3 HOH HOH . G 4 HOH A 37 337 53 HOH HOH . G 4 HOH A 38 338 27 HOH HOH . G 4 HOH A 39 339 14 HOH HOH . G 4 HOH A 40 340 30 HOH HOH . G 4 HOH A 41 341 49 HOH HOH . G 4 HOH A 42 342 29 HOH HOH . H 4 HOH B 1 301 22 HOH HOH . H 4 HOH B 2 302 4 HOH HOH . H 4 HOH B 3 303 60 HOH HOH . H 4 HOH B 4 304 2 HOH HOH . H 4 HOH B 5 305 57 HOH HOH . H 4 HOH B 6 306 11 HOH HOH . H 4 HOH B 7 307 17 HOH HOH . H 4 HOH B 8 308 1 HOH HOH . H 4 HOH B 9 309 36 HOH HOH . H 4 HOH B 10 310 56 HOH HOH . H 4 HOH B 11 311 40 HOH HOH . H 4 HOH B 12 312 12 HOH HOH . H 4 HOH B 13 313 58 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . E 3 -23.465 82.959 11.981 1 70.75 ? C1 GOL 202 B 1 HETATM 2 O O1 GOL . . . E 3 -23.092 81.563 12.113 1 75.62 ? O1 GOL 202 B 1 HETATM 3 C C2 GOL . . . E 3 -24.836 83.244 11.251 1 65.8 ? C2 GOL 202 B 1 HETATM 4 O O2 GOL . . . E 3 -26.012 83.488 12.071 1 47.93 ? O2 GOL 202 B 1 HETATM 5 C C3 GOL . . . E 3 -24.796 84.477 10.333 1 59.86 ? C3 GOL 202 B 1 HETATM 6 O O3 GOL . . . E 3 -23.71 85.348 10.599 1 57.74 ? O3 GOL 202 B 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #