data_5JRA
#
_model_server_result.job_id            vI1Jal4-uhd5O8wU_ldIRQ 
_model_server_result.datetime_utc      '2024-11-26 18:10:00' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5jra 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":202}' 
#
_entry.id    5JRA 
#
_exptl.entry_id    5JRA 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              176.124 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'ASCORBIC ACID' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5JRA 
_cell.length_a            53.199 
_cell.length_b            53.199 
_cell.length_c            180.679 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5JRA 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        179 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 65 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 10_665 -y+1,-x+1,-z+1/6 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 26.5995 46.071685 30.113167 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C PCA 1 A PCA 1 1_555 A N PHE 2 A PHE 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? 
covale ? covale2 A SG CYS 116 A CYS 116 1_555 B CAB HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.769 ? 
covale ? covale3 A SG CYS 119 A CYS 119 1_555 B CAC HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.966 ? 
metalc ? metalc1 A NE2 HIS 120 A HIS 120 1_555 B FE HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.175 ? 
metalc ? metalc2 B FE HEC . A HEC 201 1_555 E N NO . A NO 204 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.845 ? 
metalc ? metalc3 B FE HEC . A HEC 201 1_555 E O NO . A NO 204 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.719 ? 
metalc ? metalc4 B FE HEC . A HEC 201 1_555 E O NO . A NO 204 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.639 ? 
#
_chem_comp.formula           'C6 H8 O6' 
_chem_comp.formula_weight    176.124 
_chem_comp.id                ASC 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'ASCORBIC ACID' 
_chem_comp.type              l-saccharide 
_chem_comp.pdbx_synonyms     'Vitamin C' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 ASC sing 39 n n 
C1 O1 ASC doub 40 n n 
C1 O4 ASC sing 41 n n 
C2 C3 ASC doub 42 n n 
C2 O2 ASC sing 43 n n 
C3 C4 ASC sing 44 n n 
C3 O3 ASC sing 45 n n 
C4 C5 ASC sing 46 n n 
C4 O4 ASC sing 47 n n 
C4 H4 ASC sing 48 n n 
C5 C6 ASC sing 49 n n 
C5 O5 ASC sing 50 n n 
C5 H5 ASC sing 51 n n 
C6 O6 ASC sing 52 n n 
C6 H61 ASC sing 53 n n 
C6 H62 ASC sing 54 n n 
O2 HO2 ASC sing 55 n n 
O3 HO3 ASC sing 56 n n 
O5 HO5 ASC sing 57 n n 
O6 HO6 ASC sing 58 n n 
#
_atom_sites.entry_id                     5JRA 
_atom_sites.fract_transf_matrix[1][1]    0.018797 
_atom_sites.fract_transf_matrix[1][2]    0.010853 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.021705 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005535 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 HEC A 1 201 128 HEC MEH . 
C 3 ASC A 1 202 1 ASC ASC . 
D 4 SO4 A 1 203 1 SO4 SO4 . 
E 5 NO A 1 204 1 NO No . 
F 6 HOH A 1 301 98 HOH HOH . 
F 6 HOH A 2 302 85 HOH HOH . 
F 6 HOH A 3 303 42 HOH HOH . 
F 6 HOH A 4 304 54 HOH HOH . 
F 6 HOH A 5 305 97 HOH HOH . 
F 6 HOH A 6 306 5 HOH HOH . 
F 6 HOH A 7 307 65 HOH HOH . 
F 6 HOH A 8 308 80 HOH HOH . 
F 6 HOH A 9 309 34 HOH HOH . 
F 6 HOH A 10 310 76 HOH HOH . 
F 6 HOH A 11 311 134 HOH HOH . 
F 6 HOH A 12 312 138 HOH HOH . 
F 6 HOH A 13 313 107 HOH HOH . 
F 6 HOH A 14 314 108 HOH HOH . 
F 6 HOH A 15 315 72 HOH HOH . 
F 6 HOH A 16 316 29 HOH HOH . 
F 6 HOH A 17 317 19 HOH HOH . 
F 6 HOH A 18 318 116 HOH HOH . 
F 6 HOH A 19 319 53 HOH HOH . 
F 6 HOH A 20 320 25 HOH HOH . 
F 6 HOH A 21 321 23 HOH HOH . 
F 6 HOH A 22 322 96 HOH HOH . 
F 6 HOH A 23 323 49 HOH HOH . 
F 6 HOH A 24 324 112 HOH HOH . 
F 6 HOH A 25 325 52 HOH HOH . 
F 6 HOH A 26 326 43 HOH HOH . 
F 6 HOH A 27 327 31 HOH HOH . 
F 6 HOH A 28 328 8 HOH HOH . 
F 6 HOH A 29 329 115 HOH HOH . 
F 6 HOH A 30 330 47 HOH HOH . 
F 6 HOH A 31 331 57 HOH HOH . 
F 6 HOH A 32 332 84 HOH HOH . 
F 6 HOH A 33 333 102 HOH HOH . 
F 6 HOH A 34 334 2 HOH HOH . 
F 6 HOH A 35 335 136 HOH HOH . 
F 6 HOH A 36 336 24 HOH HOH . 
F 6 HOH A 37 337 128 HOH HOH . 
F 6 HOH A 38 338 10 HOH HOH . 
F 6 HOH A 39 339 44 HOH HOH . 
F 6 HOH A 40 340 63 HOH HOH . 
F 6 HOH A 41 341 51 HOH HOH . 
F 6 HOH A 42 342 13 HOH HOH . 
F 6 HOH A 43 343 55 HOH HOH . 
F 6 HOH A 44 344 71 HOH HOH . 
F 6 HOH A 45 345 40 HOH HOH . 
F 6 HOH A 46 346 30 HOH HOH . 
F 6 HOH A 47 347 61 HOH HOH . 
F 6 HOH A 48 348 110 HOH HOH . 
F 6 HOH A 49 349 66 HOH HOH . 
F 6 HOH A 50 350 127 HOH HOH . 
F 6 HOH A 51 351 11 HOH HOH . 
F 6 HOH A 52 352 143 HOH HOH . 
F 6 HOH A 53 353 118 HOH HOH . 
F 6 HOH A 54 354 94 HOH HOH . 
F 6 HOH A 55 355 26 HOH HOH . 
F 6 HOH A 56 356 68 HOH HOH . 
F 6 HOH A 57 357 59 HOH HOH . 
F 6 HOH A 58 358 106 HOH HOH . 
F 6 HOH A 59 359 4 HOH HOH . 
F 6 HOH A 60 360 18 HOH HOH . 
F 6 HOH A 61 361 6 HOH HOH . 
F 6 HOH A 62 362 33 HOH HOH . 
F 6 HOH A 63 363 1 HOH HOH . 
F 6 HOH A 64 364 7 HOH HOH . 
F 6 HOH A 65 365 36 HOH HOH . 
F 6 HOH A 66 366 114 HOH HOH . 
F 6 HOH A 67 367 21 HOH HOH . 
F 6 HOH A 68 368 99 HOH HOH . 
F 6 HOH A 69 369 32 HOH HOH . 
F 6 HOH A 70 370 74 HOH HOH . 
F 6 HOH A 71 371 125 HOH HOH . 
F 6 HOH A 72 372 45 HOH HOH . 
F 6 HOH A 73 373 15 HOH HOH . 
F 6 HOH A 74 374 86 HOH HOH . 
F 6 HOH A 75 375 129 HOH HOH . 
F 6 HOH A 76 376 113 HOH HOH . 
F 6 HOH A 77 377 14 HOH HOH . 
F 6 HOH A 78 378 91 HOH HOH . 
F 6 HOH A 79 379 142 HOH HOH . 
F 6 HOH A 80 380 120 HOH HOH . 
F 6 HOH A 81 381 124 HOH HOH . 
F 6 HOH A 82 382 46 HOH HOH . 
F 6 HOH A 83 383 87 HOH HOH . 
F 6 HOH A 84 384 83 HOH HOH . 
F 6 HOH A 85 385 64 HOH HOH . 
F 6 HOH A 86 386 111 HOH HOH . 
F 6 HOH A 87 387 90 HOH HOH . 
F 6 HOH A 88 388 22 HOH HOH . 
F 6 HOH A 89 389 92 HOH HOH . 
F 6 HOH A 90 390 28 HOH HOH . 
F 6 HOH A 91 391 145 HOH HOH . 
F 6 HOH A 92 392 17 HOH HOH . 
F 6 HOH A 93 393 38 HOH HOH . 
F 6 HOH A 94 394 67 HOH HOH . 
F 6 HOH A 95 395 119 HOH HOH . 
F 6 HOH A 96 396 144 HOH HOH . 
F 6 HOH A 97 397 62 HOH HOH . 
F 6 HOH A 98 398 27 HOH HOH . 
F 6 HOH A 99 399 48 HOH HOH . 
F 6 HOH A 100 400 9 HOH HOH . 
F 6 HOH A 101 401 146 HOH HOH . 
F 6 HOH A 102 402 121 HOH HOH . 
F 6 HOH A 103 403 101 HOH HOH . 
F 6 HOH A 104 404 131 HOH HOH . 
F 6 HOH A 105 405 56 HOH HOH . 
F 6 HOH A 106 406 95 HOH HOH . 
F 6 HOH A 107 407 37 HOH HOH . 
F 6 HOH A 108 408 16 HOH HOH . 
F 6 HOH A 109 409 88 HOH HOH . 
F 6 HOH A 110 410 93 HOH HOH . 
F 6 HOH A 111 411 60 HOH HOH . 
F 6 HOH A 112 412 140 HOH HOH . 
F 6 HOH A 113 413 82 HOH HOH . 
F 6 HOH A 114 414 117 HOH HOH . 
F 6 HOH A 115 415 70 HOH HOH . 
F 6 HOH A 116 416 137 HOH HOH . 
F 6 HOH A 117 417 35 HOH HOH . 
F 6 HOH A 118 418 133 HOH HOH . 
F 6 HOH A 119 419 41 HOH HOH . 
F 6 HOH A 120 420 81 HOH HOH . 
F 6 HOH A 121 421 39 HOH HOH . 
F 6 HOH A 122 422 135 HOH HOH . 
F 6 HOH A 123 423 20 HOH HOH . 
F 6 HOH A 124 424 103 HOH HOH . 
F 6 HOH A 125 425 69 HOH HOH . 
F 6 HOH A 126 426 126 HOH HOH . 
F 6 HOH A 127 427 130 HOH HOH . 
F 6 HOH A 128 428 132 HOH HOH . 
F 6 HOH A 129 429 100 HOH HOH . 
F 6 HOH A 130 430 75 HOH HOH . 
F 6 HOH A 131 431 12 HOH HOH . 
F 6 HOH A 132 432 3 HOH HOH . 
F 6 HOH A 133 433 139 HOH HOH . 
F 6 HOH A 134 434 123 HOH HOH . 
F 6 HOH A 135 435 147 HOH HOH . 
F 6 HOH A 136 436 109 HOH HOH . 
F 6 HOH A 137 437 78 HOH HOH . 
F 6 HOH A 138 438 122 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 ASC . . . C 3 7.768 43.424 14.991 0.7 37.32 ? C1 ASC 202 A 1 
HETATM 2 C C2 ASC . . . C 3 8.455 42.417 15.79 0.7 36.49 ? C2 ASC 202 A 1 
HETATM 3 C C3 ASC . . . C 3 8.734 42.976 17.002 0.7 31.01 ? C3 ASC 202 A 1 
HETATM 4 C C4 ASC . . . C 3 8.238 44.391 17.071 0.7 30.78 ? C4 ASC 202 A 1 
HETATM 5 C C5 ASC . . . C 3 9.371 45.332 17.412 0.7 29.56 ? C5 ASC 202 A 1 
HETATM 6 C C6 ASC . . . C 3 8.899 46.776 17.357 0.7 33.62 ? C6 ASC 202 A 1 
HETATM 7 O O1 ASC . . . C 3 7.214 43.254 13.88 0.7 46.19 ? O1 ASC 202 A 1 
HETATM 8 O O2 ASC . . . C 3 8.647 41.146 15.377 0.7 34.06 ? O2 ASC 202 A 1 
HETATM 9 O O3 ASC . . . C 3 9.342 42.442 18.066 0.7 37.36 ? O3 ASC 202 A 1 
HETATM 10 O O4 ASC . . . C 3 7.738 44.684 15.744 0.7 35.31 ? O4 ASC 202 A 1 
HETATM 11 O O5 ASC . . . C 3 10.435 45.159 16.455 0.7 30.36 ? O5 ASC 202 A 1 
HETATM 12 O O6 ASC . . . C 3 9.946 47.624 17.838 0.7 38.49 ? O6 ASC 202 A 1 
#
_model_server_stats.io_time_ms              59 
_model_server_stats.parse_time_ms           26 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           279 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           12 
#