data_5JRA # _model_server_result.job_id fjrxY0gKS_i66nc-4gZxoA _model_server_result.datetime_utc '2024-11-07 17:29:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5jra # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":203}' # _entry.id 5JRA # _exptl.entry_id 5JRA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5JRA _cell.length_a 53.199 _cell.length_b 53.199 _cell.length_c 180.679 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5JRA _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 10_665 -y+1,-x+1,-z+1/6 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 26.5995 46.071685 30.113167 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C PCA 1 A PCA 1 1_555 A N PHE 2 A PHE 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale2 A SG CYS 116 A CYS 116 1_555 B CAB HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.769 ? covale ? covale3 A SG CYS 119 A CYS 119 1_555 B CAC HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.966 ? metalc ? metalc1 A NE2 HIS 120 A HIS 120 1_555 B FE HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.175 ? metalc ? metalc2 B FE HEC . A HEC 201 1_555 E N NO . A NO 204 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.845 ? metalc ? metalc3 B FE HEC . A HEC 201 1_555 E O NO . A NO 204 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.719 ? metalc ? metalc4 B FE HEC . A HEC 201 1_555 E O NO . A NO 204 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.639 ? # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1 SO4 doub 411 n n S O2 SO4 doub 412 n n S O3 SO4 sing 413 n n S O4 SO4 sing 414 n n # _atom_sites.entry_id 5JRA _atom_sites.fract_transf_matrix[1][1] 0.018797 _atom_sites.fract_transf_matrix[1][2] 0.010853 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021705 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005535 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEC A 1 201 128 HEC MEH . C 3 ASC A 1 202 1 ASC ASC . D 4 SO4 A 1 203 1 SO4 SO4 . E 5 NO A 1 204 1 NO No . F 6 HOH A 1 301 98 HOH HOH . F 6 HOH A 2 302 85 HOH HOH . F 6 HOH A 3 303 42 HOH HOH . F 6 HOH A 4 304 54 HOH HOH . F 6 HOH A 5 305 97 HOH HOH . F 6 HOH A 6 306 5 HOH HOH . F 6 HOH A 7 307 65 HOH HOH . F 6 HOH A 8 308 80 HOH HOH . F 6 HOH A 9 309 34 HOH HOH . F 6 HOH A 10 310 76 HOH HOH . F 6 HOH A 11 311 134 HOH HOH . F 6 HOH A 12 312 138 HOH HOH . F 6 HOH A 13 313 107 HOH HOH . F 6 HOH A 14 314 108 HOH HOH . F 6 HOH A 15 315 72 HOH HOH . F 6 HOH A 16 316 29 HOH HOH . F 6 HOH A 17 317 19 HOH HOH . F 6 HOH A 18 318 116 HOH HOH . F 6 HOH A 19 319 53 HOH HOH . F 6 HOH A 20 320 25 HOH HOH . F 6 HOH A 21 321 23 HOH HOH . F 6 HOH A 22 322 96 HOH HOH . F 6 HOH A 23 323 49 HOH HOH . F 6 HOH A 24 324 112 HOH HOH . F 6 HOH A 25 325 52 HOH HOH . F 6 HOH A 26 326 43 HOH HOH . F 6 HOH A 27 327 31 HOH HOH . F 6 HOH A 28 328 8 HOH HOH . F 6 HOH A 29 329 115 HOH HOH . F 6 HOH A 30 330 47 HOH HOH . F 6 HOH A 31 331 57 HOH HOH . F 6 HOH A 32 332 84 HOH HOH . F 6 HOH A 33 333 102 HOH HOH . F 6 HOH A 34 334 2 HOH HOH . F 6 HOH A 35 335 136 HOH HOH . F 6 HOH A 36 336 24 HOH HOH . F 6 HOH A 37 337 128 HOH HOH . F 6 HOH A 38 338 10 HOH HOH . F 6 HOH A 39 339 44 HOH HOH . F 6 HOH A 40 340 63 HOH HOH . F 6 HOH A 41 341 51 HOH HOH . F 6 HOH A 42 342 13 HOH HOH . F 6 HOH A 43 343 55 HOH HOH . F 6 HOH A 44 344 71 HOH HOH . F 6 HOH A 45 345 40 HOH HOH . F 6 HOH A 46 346 30 HOH HOH . F 6 HOH A 47 347 61 HOH HOH . F 6 HOH A 48 348 110 HOH HOH . F 6 HOH A 49 349 66 HOH HOH . F 6 HOH A 50 350 127 HOH HOH . F 6 HOH A 51 351 11 HOH HOH . F 6 HOH A 52 352 143 HOH HOH . F 6 HOH A 53 353 118 HOH HOH . F 6 HOH A 54 354 94 HOH HOH . F 6 HOH A 55 355 26 HOH HOH . F 6 HOH A 56 356 68 HOH HOH . F 6 HOH A 57 357 59 HOH HOH . F 6 HOH A 58 358 106 HOH HOH . F 6 HOH A 59 359 4 HOH HOH . F 6 HOH A 60 360 18 HOH HOH . F 6 HOH A 61 361 6 HOH HOH . F 6 HOH A 62 362 33 HOH HOH . F 6 HOH A 63 363 1 HOH HOH . F 6 HOH A 64 364 7 HOH HOH . F 6 HOH A 65 365 36 HOH HOH . F 6 HOH A 66 366 114 HOH HOH . F 6 HOH A 67 367 21 HOH HOH . F 6 HOH A 68 368 99 HOH HOH . F 6 HOH A 69 369 32 HOH HOH . F 6 HOH A 70 370 74 HOH HOH . F 6 HOH A 71 371 125 HOH HOH . F 6 HOH A 72 372 45 HOH HOH . F 6 HOH A 73 373 15 HOH HOH . F 6 HOH A 74 374 86 HOH HOH . F 6 HOH A 75 375 129 HOH HOH . F 6 HOH A 76 376 113 HOH HOH . F 6 HOH A 77 377 14 HOH HOH . F 6 HOH A 78 378 91 HOH HOH . F 6 HOH A 79 379 142 HOH HOH . F 6 HOH A 80 380 120 HOH HOH . F 6 HOH A 81 381 124 HOH HOH . F 6 HOH A 82 382 46 HOH HOH . F 6 HOH A 83 383 87 HOH HOH . F 6 HOH A 84 384 83 HOH HOH . F 6 HOH A 85 385 64 HOH HOH . F 6 HOH A 86 386 111 HOH HOH . F 6 HOH A 87 387 90 HOH HOH . F 6 HOH A 88 388 22 HOH HOH . F 6 HOH A 89 389 92 HOH HOH . F 6 HOH A 90 390 28 HOH HOH . F 6 HOH A 91 391 145 HOH HOH . F 6 HOH A 92 392 17 HOH HOH . F 6 HOH A 93 393 38 HOH HOH . F 6 HOH A 94 394 67 HOH HOH . F 6 HOH A 95 395 119 HOH HOH . F 6 HOH A 96 396 144 HOH HOH . F 6 HOH A 97 397 62 HOH HOH . F 6 HOH A 98 398 27 HOH HOH . F 6 HOH A 99 399 48 HOH HOH . F 6 HOH A 100 400 9 HOH HOH . F 6 HOH A 101 401 146 HOH HOH . F 6 HOH A 102 402 121 HOH HOH . F 6 HOH A 103 403 101 HOH HOH . F 6 HOH A 104 404 131 HOH HOH . F 6 HOH A 105 405 56 HOH HOH . F 6 HOH A 106 406 95 HOH HOH . F 6 HOH A 107 407 37 HOH HOH . F 6 HOH A 108 408 16 HOH HOH . F 6 HOH A 109 409 88 HOH HOH . F 6 HOH A 110 410 93 HOH HOH . F 6 HOH A 111 411 60 HOH HOH . F 6 HOH A 112 412 140 HOH HOH . F 6 HOH A 113 413 82 HOH HOH . F 6 HOH A 114 414 117 HOH HOH . F 6 HOH A 115 415 70 HOH HOH . F 6 HOH A 116 416 137 HOH HOH . F 6 HOH A 117 417 35 HOH HOH . F 6 HOH A 118 418 133 HOH HOH . F 6 HOH A 119 419 41 HOH HOH . F 6 HOH A 120 420 81 HOH HOH . F 6 HOH A 121 421 39 HOH HOH . F 6 HOH A 122 422 135 HOH HOH . F 6 HOH A 123 423 20 HOH HOH . F 6 HOH A 124 424 103 HOH HOH . F 6 HOH A 125 425 69 HOH HOH . F 6 HOH A 126 426 126 HOH HOH . F 6 HOH A 127 427 130 HOH HOH . F 6 HOH A 128 428 132 HOH HOH . F 6 HOH A 129 429 100 HOH HOH . F 6 HOH A 130 430 75 HOH HOH . F 6 HOH A 131 431 12 HOH HOH . F 6 HOH A 132 432 3 HOH HOH . F 6 HOH A 133 433 139 HOH HOH . F 6 HOH A 134 434 123 HOH HOH . F 6 HOH A 135 435 147 HOH HOH . F 6 HOH A 136 436 109 HOH HOH . F 6 HOH A 137 437 78 HOH HOH . F 6 HOH A 138 438 122 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . D 4 11.592 39.937 17.04 0.5 33.24 ? S SO4 203 A 1 HETATM 2 O O1 SO4 . . . D 4 12.04 38.519 17.069 0.5 34.29 ? O1 SO4 203 A 1 HETATM 3 O O2 SO4 . . . D 4 11.022 40.282 15.725 0.5 32.03 ? O2 SO4 203 A 1 HETATM 4 O O3 SO4 . . . D 4 12.755 40.795 17.323 0.5 33.65 ? O3 SO4 203 A 1 HETATM 5 O O4 SO4 . . . D 4 10.54 40.125 18.048 0.5 29.12 ? O4 SO4 203 A 1 # _model_server_stats.io_time_ms 86 _model_server_stats.parse_time_ms 139 _model_server_stats.create_model_time_ms 37 _model_server_stats.query_time_ms 497 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 5 #