data_5JRC # _model_server_result.job_id G5KyobTlTYMlO9zu2EXIpw _model_server_result.datetime_utc '2024-10-19 14:27:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5jrc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":201}' # _entry.id 5JRC # _exptl.entry_id 5JRC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 118.81 _cell.angle_gamma 90 _cell.entry_id 5JRC _cell.length_a 165.416 _cell.length_b 77.648 _cell.length_c 87.754 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5JRC _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details decameric _pdbx_struct_assembly.oligomeric_count 10 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_556 -x,y,-z+1 -1 0 0 0 1 0 0 0 -1 -42.289233 0 76.892037 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 G N N ? 4 H N N ? 4 I N N ? 4 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLU 119 A GLU 85 1_555 F CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.13 ? metalc ? metalc2 A OE2 GLU 119 A GLU 85 1_555 F CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.351 ? metalc ? metalc3 A OE1 GLU 155 A GLU 121 1_555 F CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.893 ? metalc ? metalc4 F CA CA . A CA 201 1_555 K O HOH . A HOH 364 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.345 ? metalc ? metalc5 B OE1 GLU 119 B GLU 85 1_555 G CA CA . B CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.925 ? metalc ? metalc6 B OE2 GLU 119 B GLU 85 1_555 G CA CA . B CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.467 ? metalc ? metalc7 G CA CA . B CA 201 1_555 L O HOH . B HOH 360 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.161 ? metalc ? metalc8 C OE1 GLU 116 C GLU 82 1_555 H CA CA . C CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.438 ? metalc ? metalc9 C OE2 GLU 116 C GLU 82 1_555 H CA CA . C CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.542 ? metalc ? metalc10 C OE1 GLU 119 C GLU 85 1_555 H CA CA . C CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.991 ? metalc ? metalc11 C OE1 GLU 119 C GLU 85 1_555 I CA CA . C CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.098 ? metalc ? metalc12 C OE2 GLU 119 C GLU 85 1_555 I CA CA . C CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? metalc ? metalc13 C OD2 ASP 151 C ASP 117 1_555 H CA CA . C CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.205 ? metalc ? metalc14 C OE1 GLU 155 C GLU 121 1_555 I CA CA . C CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.537 ? metalc ? metalc15 H CA CA . C CA 201 1_555 M O HOH . C HOH 322 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.57 ? metalc ? metalc16 H CA CA . C CA 201 1_555 E O3' A 4 E A 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.023 ? metalc ? metalc17 H CA CA . C CA 201 1_555 E OP1 A 5 E A 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.351 ? metalc ? metalc18 I CA CA . C CA 202 1_555 M O HOH . C HOH 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.278 ? metalc ? metalc19 I CA CA . C CA 202 1_555 E OP1 A 5 E A 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? metalc ? metalc20 I CA CA . C CA 202 1_555 O O HOH . E HOH 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? metalc ? metalc21 I CA CA . C CA 202 1_555 O O HOH . E HOH 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.651 ? metalc ? metalc22 D OE2 GLU 119 D GLU 85 1_555 J CA CA . D CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.371 ? metalc ? metalc23 D OE2 GLU 155 D GLU 121 1_555 J CA CA . D CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.824 ? metalc ? metalc24 J CA CA . D CA 201 1_555 N O HOH . D HOH 311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? metalc ? metalc25 J CA CA . D CA 201 1_555 N O HOH . D HOH 327 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.613 ? metalc ? metalc26 J CA CA . D CA 201 1_555 N O HOH . D HOH 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? metalc ? metalc27 J CA CA . D CA 201 1_555 N O HOH . D HOH 345 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.169 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5JRC _atom_sites.fract_transf_matrix[1][1] 0.006045 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003325 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012879 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013005 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 4 CA A 1 201 3 CA CA . G 4 CA B 1 201 5 CA CA . H 4 CA C 1 201 1 CA CA . I 4 CA C 1 202 2 CA CA . J 4 CA D 1 201 4 CA CA . K 5 HOH A 1 301 195 HOH HOH . K 5 HOH A 2 302 197 HOH HOH . K 5 HOH A 3 303 198 HOH HOH . K 5 HOH A 4 304 34 HOH HOH . K 5 HOH A 5 305 194 HOH HOH . K 5 HOH A 6 306 43 HOH HOH . K 5 HOH A 7 307 192 HOH HOH . K 5 HOH A 8 308 14 HOH HOH . K 5 HOH A 9 309 126 HOH HOH . K 5 HOH A 10 310 142 HOH HOH . K 5 HOH A 11 311 148 HOH HOH . K 5 HOH A 12 312 145 HOH HOH . K 5 HOH A 13 313 109 HOH HOH . K 5 HOH A 14 314 116 HOH HOH . K 5 HOH A 15 315 15 HOH HOH . K 5 HOH A 16 316 146 HOH HOH . K 5 HOH A 17 317 166 HOH HOH . K 5 HOH A 18 318 58 HOH HOH . K 5 HOH A 19 319 157 HOH HOH . K 5 HOH A 20 320 111 HOH HOH . K 5 HOH A 21 321 77 HOH HOH . K 5 HOH A 22 322 32 HOH HOH . K 5 HOH A 23 323 156 HOH HOH . K 5 HOH A 24 324 62 HOH HOH . K 5 HOH A 25 325 202 HOH HOH . K 5 HOH A 26 326 11 HOH HOH . K 5 HOH A 27 327 139 HOH HOH . K 5 HOH A 28 328 71 HOH HOH . K 5 HOH A 29 329 110 HOH HOH . K 5 HOH A 30 330 154 HOH HOH . K 5 HOH A 31 331 183 HOH HOH . K 5 HOH A 32 332 45 HOH HOH . K 5 HOH A 33 333 33 HOH HOH . K 5 HOH A 34 334 21 HOH HOH . K 5 HOH A 35 335 100 HOH HOH . K 5 HOH A 36 336 159 HOH HOH . K 5 HOH A 37 337 6 HOH HOH . K 5 HOH A 38 338 164 HOH HOH . K 5 HOH A 39 339 47 HOH HOH . K 5 HOH A 40 340 75 HOH HOH . K 5 HOH A 41 341 49 HOH HOH . K 5 HOH A 42 342 138 HOH HOH . K 5 HOH A 43 343 16 HOH HOH . K 5 HOH A 44 344 20 HOH HOH . K 5 HOH A 45 345 17 HOH HOH . K 5 HOH A 46 346 151 HOH HOH . K 5 HOH A 47 347 18 HOH HOH . K 5 HOH A 48 348 66 HOH HOH . K 5 HOH A 49 349 86 HOH HOH . K 5 HOH A 50 350 104 HOH HOH . K 5 HOH A 51 351 162 HOH HOH . K 5 HOH A 52 352 68 HOH HOH . K 5 HOH A 53 353 158 HOH HOH . K 5 HOH A 54 354 27 HOH HOH . K 5 HOH A 55 355 152 HOH HOH . K 5 HOH A 56 356 193 HOH HOH . K 5 HOH A 57 357 143 HOH HOH . K 5 HOH A 58 358 128 HOH HOH . K 5 HOH A 59 359 174 HOH HOH . K 5 HOH A 60 360 92 HOH HOH . K 5 HOH A 61 361 90 HOH HOH . K 5 HOH A 62 362 102 HOH HOH . K 5 HOH A 63 363 189 HOH HOH . K 5 HOH A 64 364 230 HOH HOH . K 5 HOH A 65 365 60 HOH HOH . K 5 HOH A 66 366 196 HOH HOH . K 5 HOH A 67 367 201 HOH HOH . K 5 HOH A 68 368 199 HOH HOH . K 5 HOH A 69 369 188 HOH HOH . L 5 HOH B 1 301 133 HOH HOH . L 5 HOH B 2 302 208 HOH HOH . L 5 HOH B 3 303 191 HOH HOH . L 5 HOH B 4 304 127 HOH HOH . L 5 HOH B 5 305 97 HOH HOH . L 5 HOH B 6 306 125 HOH HOH . L 5 HOH B 7 307 140 HOH HOH . L 5 HOH B 8 308 81 HOH HOH . L 5 HOH B 9 309 124 HOH HOH . L 5 HOH B 10 310 134 HOH HOH . L 5 HOH B 11 311 217 HOH HOH . L 5 HOH B 12 312 12 HOH HOH . L 5 HOH B 13 313 131 HOH HOH . L 5 HOH B 14 314 107 HOH HOH . L 5 HOH B 15 315 23 HOH HOH . L 5 HOH B 16 316 44 HOH HOH . L 5 HOH B 17 317 98 HOH HOH . L 5 HOH B 18 318 144 HOH HOH . L 5 HOH B 19 319 221 HOH HOH . L 5 HOH B 20 320 46 HOH HOH . L 5 HOH B 21 321 80 HOH HOH . L 5 HOH B 22 322 180 HOH HOH . L 5 HOH B 23 323 89 HOH HOH . L 5 HOH B 24 324 19 HOH HOH . L 5 HOH B 25 325 181 HOH HOH . L 5 HOH B 26 326 161 HOH HOH . L 5 HOH B 27 327 207 HOH HOH . L 5 HOH B 28 328 129 HOH HOH . L 5 HOH B 29 329 219 HOH HOH . L 5 HOH B 30 330 204 HOH HOH . L 5 HOH B 31 331 153 HOH HOH . L 5 HOH B 32 332 24 HOH HOH . L 5 HOH B 33 333 70 HOH HOH . L 5 HOH B 34 334 5 HOH HOH . L 5 HOH B 35 335 41 HOH HOH . L 5 HOH B 36 336 177 HOH HOH . L 5 HOH B 37 337 53 HOH HOH . L 5 HOH B 38 338 28 HOH HOH . L 5 HOH B 39 339 73 HOH HOH . L 5 HOH B 40 340 141 HOH HOH . L 5 HOH B 41 341 185 HOH HOH . L 5 HOH B 42 342 40 HOH HOH . L 5 HOH B 43 343 150 HOH HOH . L 5 HOH B 44 344 186 HOH HOH . L 5 HOH B 45 345 227 HOH HOH . L 5 HOH B 46 346 93 HOH HOH . L 5 HOH B 47 347 155 HOH HOH . L 5 HOH B 48 348 205 HOH HOH . L 5 HOH B 49 349 79 HOH HOH . L 5 HOH B 50 350 88 HOH HOH . L 5 HOH B 51 351 101 HOH HOH . L 5 HOH B 52 352 95 HOH HOH . L 5 HOH B 53 353 175 HOH HOH . L 5 HOH B 54 354 169 HOH HOH . L 5 HOH B 55 355 112 HOH HOH . L 5 HOH B 56 356 216 HOH HOH . L 5 HOH B 57 357 218 HOH HOH . L 5 HOH B 58 358 29 HOH HOH . L 5 HOH B 59 359 206 HOH HOH . L 5 HOH B 60 360 220 HOH HOH . L 5 HOH B 61 361 203 HOH HOH . M 5 HOH C 1 301 115 HOH HOH . M 5 HOH C 2 302 211 HOH HOH . M 5 HOH C 3 303 22 HOH HOH . M 5 HOH C 4 304 172 HOH HOH . M 5 HOH C 5 305 42 HOH HOH . M 5 HOH C 6 306 65 HOH HOH . M 5 HOH C 7 307 48 HOH HOH . M 5 HOH C 8 308 76 HOH HOH . M 5 HOH C 9 309 69 HOH HOH . M 5 HOH C 10 310 36 HOH HOH . M 5 HOH C 11 311 57 HOH HOH . M 5 HOH C 12 312 87 HOH HOH . M 5 HOH C 13 313 8 HOH HOH . M 5 HOH C 14 314 63 HOH HOH . M 5 HOH C 15 315 51 HOH HOH . M 5 HOH C 16 316 78 HOH HOH . M 5 HOH C 17 317 26 HOH HOH . M 5 HOH C 18 318 56 HOH HOH . M 5 HOH C 19 319 4 HOH HOH . M 5 HOH C 20 320 106 HOH HOH . M 5 HOH C 21 321 103 HOH HOH . M 5 HOH C 22 322 3 HOH HOH . M 5 HOH C 23 323 85 HOH HOH . M 5 HOH C 24 324 136 HOH HOH . M 5 HOH C 25 325 137 HOH HOH . M 5 HOH C 26 326 167 HOH HOH . M 5 HOH C 27 327 74 HOH HOH . M 5 HOH C 28 328 212 HOH HOH . M 5 HOH C 29 329 118 HOH HOH . N 5 HOH D 1 301 132 HOH HOH . N 5 HOH D 2 302 179 HOH HOH . N 5 HOH D 3 303 35 HOH HOH . N 5 HOH D 4 304 114 HOH HOH . N 5 HOH D 5 305 209 HOH HOH . N 5 HOH D 6 306 61 HOH HOH . N 5 HOH D 7 307 30 HOH HOH . N 5 HOH D 8 308 55 HOH HOH . N 5 HOH D 9 309 59 HOH HOH . N 5 HOH D 10 310 214 HOH HOH . N 5 HOH D 11 311 122 HOH HOH . N 5 HOH D 12 312 31 HOH HOH . N 5 HOH D 13 313 13 HOH HOH . N 5 HOH D 14 314 108 HOH HOH . N 5 HOH D 15 315 67 HOH HOH . N 5 HOH D 16 316 176 HOH HOH . N 5 HOH D 17 317 84 HOH HOH . N 5 HOH D 18 318 213 HOH HOH . N 5 HOH D 19 319 10 HOH HOH . N 5 HOH D 20 320 178 HOH HOH . N 5 HOH D 21 321 113 HOH HOH . N 5 HOH D 22 322 72 HOH HOH . N 5 HOH D 23 323 83 HOH HOH . N 5 HOH D 24 324 37 HOH HOH . N 5 HOH D 25 325 7 HOH HOH . N 5 HOH D 26 326 52 HOH HOH . N 5 HOH D 27 327 123 HOH HOH . N 5 HOH D 28 328 173 HOH HOH . N 5 HOH D 29 329 25 HOH HOH . N 5 HOH D 30 330 9 HOH HOH . N 5 HOH D 31 331 160 HOH HOH . N 5 HOH D 32 332 229 HOH HOH . N 5 HOH D 33 333 50 HOH HOH . N 5 HOH D 34 334 184 HOH HOH . N 5 HOH D 35 335 225 HOH HOH . N 5 HOH D 36 336 38 HOH HOH . N 5 HOH D 37 337 130 HOH HOH . N 5 HOH D 38 338 99 HOH HOH . N 5 HOH D 39 339 39 HOH HOH . N 5 HOH D 40 340 64 HOH HOH . N 5 HOH D 41 341 149 HOH HOH . N 5 HOH D 42 342 226 HOH HOH . N 5 HOH D 43 343 163 HOH HOH . N 5 HOH D 44 344 82 HOH HOH . N 5 HOH D 45 345 121 HOH HOH . N 5 HOH D 46 346 91 HOH HOH . N 5 HOH D 47 347 228 HOH HOH . O 5 HOH E 1 101 187 HOH HOH . O 5 HOH E 2 102 119 HOH HOH . O 5 HOH E 3 103 1 HOH HOH . O 5 HOH E 4 104 2 HOH HOH . O 5 HOH E 5 105 54 HOH HOH . O 5 HOH E 6 106 120 HOH HOH . O 5 HOH E 7 107 222 HOH HOH . O 5 HOH E 8 108 215 HOH HOH . O 5 HOH E 9 109 224 HOH HOH . O 5 HOH E 10 110 117 HOH HOH . O 5 HOH E 11 111 210 HOH HOH . O 5 HOH E 12 112 223 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id J _atom_site.label_entity_id 4 _atom_site.Cartn_x -36.304 _atom_site.Cartn_y 24.767 _atom_site.Cartn_z 13.892 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 39.88 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 201 _atom_site.auth_asym_id D _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 67 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 1 #