data_5JRF
#
_model_server_result.job_id            5mAKF0TqdSO1EkPuoOqPQw 
_model_server_result.datetime_utc      '2024-11-23 03:29:01' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5jrf 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"R","auth_seq_id":317}' 
#
_entry.id    5JRF 
#
_exptl.entry_id    5JRF 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              126.904 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'IODIDE ION' 
_entity.pdbx_number_of_molecules    20 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5JRF 
_cell.length_a            40.506 
_cell.length_b            83.749 
_cell.length_c            234.102 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
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_symmetry.entry_id                 5JRF 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        23 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'I 2 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 J N N 
? 3 K N N 
? 3 L N N 
? 3 M N N 
? 3 N N N 
? 3 O N N 
? 3 P N N 
? 3 Q N N 
? 3 R N N 
? 3 S N N 
? 3 T N N 
? 3 U N N 
? 3 V N N 
? 3 W N N 
? 3 X N N 
? 3 Y N N 
? 3 Z N N 
? 3 AA N N 
? 3 BA N N 
? 3 CA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C SER 254 A SER 254 1_555 A N LYR 255 A LYR 255 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? 
covale ? covale2 A C LYR 255 A LYR 255 1_555 A N VAL 256 A VAL 256 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.312 ? 
#
_chem_comp.formula           'I -1' 
_chem_comp.formula_weight    126.904 
_chem_comp.id                IOD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'IODIDE ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
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_atom_sites.entry_id                     5JRF 
_atom_sites.fract_transf_matrix[1][1]    0.024688 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01194 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004272 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 LFA A 1 301 1 LFA LFA . 
C 2 LFA A 1 302 2 LFA LFA . 
D 2 LFA A 1 303 3 LFA LFA . 
E 2 LFA A 1 304 4 LFA LFA . 
F 2 LFA A 1 305 5 LFA LFA . 
G 2 LFA A 1 306 8 LFA LFA . 
H 2 LFA A 1 307 9 LFA LFA . 
I 2 LFA A 1 308 11 LFA LFA . 
J 3 IOD A 1 309 1 IOD IOD . 
K 3 IOD A 1 310 2 IOD IOD . 
L 3 IOD A 1 311 3 IOD IOD . 
M 3 IOD A 1 312 4 IOD IOD . 
N 3 IOD A 1 313 5 IOD IOD . 
O 3 IOD A 1 314 6 IOD IOD . 
P 3 IOD A 1 315 7 IOD IOD . 
Q 3 IOD A 1 316 8 IOD IOD . 
R 3 IOD A 1 317 9 IOD IOD . 
S 3 IOD A 1 318 10 IOD IOD . 
T 3 IOD A 1 319 11 IOD IOD . 
U 3 IOD A 1 320 12 IOD IOD . 
V 3 IOD A 1 321 13 IOD IOD . 
W 3 IOD A 1 322 14 IOD IOD . 
X 3 IOD A 1 323 15 IOD IOD . 
Y 3 IOD A 1 324 16 IOD IOD . 
Z 3 IOD A 1 325 17 IOD IOD . 
AA 3 IOD A 1 326 18 IOD IOD . 
BA 3 IOD A 1 327 19 IOD IOD . 
CA 3 IOD A 1 328 20 IOD IOD . 
DA 4 HOH A 1 401 9 HOH HOH . 
DA 4 HOH A 2 402 7 HOH HOH . 
DA 4 HOH A 3 403 28 HOH HOH . 
DA 4 HOH A 4 404 22 HOH HOH . 
DA 4 HOH A 5 405 31 HOH HOH . 
DA 4 HOH A 6 406 6 HOH HOH . 
DA 4 HOH A 7 407 8 HOH HOH . 
DA 4 HOH A 8 408 20 HOH HOH . 
DA 4 HOH A 9 409 2 HOH HOH . 
DA 4 HOH A 10 410 11 HOH HOH . 
DA 4 HOH A 11 411 3 HOH HOH . 
DA 4 HOH A 12 412 34 HOH HOH . 
DA 4 HOH A 13 413 27 HOH HOH . 
DA 4 HOH A 14 414 13 HOH HOH . 
DA 4 HOH A 15 415 1 HOH HOH . 
DA 4 HOH A 16 416 25 HOH HOH . 
DA 4 HOH A 17 417 35 HOH HOH . 
DA 4 HOH A 18 418 24 HOH HOH . 
DA 4 HOH A 19 419 5 HOH HOH . 
DA 4 HOH A 20 420 10 HOH HOH . 
DA 4 HOH A 21 421 32 HOH HOH . 
DA 4 HOH A 22 422 4 HOH HOH . 
DA 4 HOH A 23 423 23 HOH HOH . 
DA 4 HOH A 24 424 12 HOH HOH . 
DA 4 HOH A 25 425 15 HOH HOH . 
DA 4 HOH A 26 426 33 HOH HOH . 
DA 4 HOH A 27 427 48 HOH HOH . 
DA 4 HOH A 28 428 30 HOH HOH . 
DA 4 HOH A 29 429 42 HOH HOH . 
DA 4 HOH A 30 430 26 HOH HOH . 
DA 4 HOH A 31 431 16 HOH HOH . 
DA 4 HOH A 32 432 40 HOH HOH . 
DA 4 HOH A 33 433 37 HOH HOH . 
DA 4 HOH A 34 434 21 HOH HOH . 
DA 4 HOH A 35 435 45 HOH HOH . 
DA 4 HOH A 36 436 39 HOH HOH . 
DA 4 HOH A 37 437 19 HOH HOH . 
DA 4 HOH A 38 438 14 HOH HOH . 
DA 4 HOH A 39 439 29 HOH HOH . 
DA 4 HOH A 40 440 44 HOH HOH . 
DA 4 HOH A 41 441 18 HOH HOH . 
DA 4 HOH A 42 442 49 HOH HOH . 
DA 4 HOH A 43 443 43 HOH HOH . 
DA 4 HOH A 44 444 36 HOH HOH . 
DA 4 HOH A 45 445 41 HOH HOH . 
DA 4 HOH A 46 446 17 HOH HOH . 
DA 4 HOH A 47 447 38 HOH HOH . 
DA 4 HOH A 48 448 47 HOH HOH . 
DA 4 HOH A 49 449 46 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           I 
_atom_site.label_atom_id         I 
_atom_site.label_comp_id         IOD 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         R 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               28.524 
_atom_site.Cartn_y               14.03 
_atom_site.Cartn_z               47.78 
_atom_site.occupancy             0.56 
_atom_site.B_iso_or_equiv        61.3 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          I 
_atom_site.auth_comp_id          IOD 
_atom_site.auth_seq_id           317 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           267 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           1 
#