data_5JRM
#
_model_server_result.job_id            v3yYLHPscU5QCQNkrVRuSw 
_model_server_result.datetime_utc      '2025-07-07 21:44:00' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5jrm 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":201}' 
#
_entry.id    5JRM 
#
_exptl.entry_id    5JRM 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5JRM 
_cell.length_a            105.233 
_cell.length_b            35.886 
_cell.length_c            48.343 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5JRM 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 116 n n 
C1 C2 GOL sing 117 n n 
C1 H11 GOL sing 118 n n 
C1 H12 GOL sing 119 n n 
O1 HO1 GOL sing 120 n n 
C2 O2 GOL sing 121 n n 
C2 C3 GOL sing 122 n n 
C2 H2 GOL sing 123 n n 
O2 HO2 GOL sing 124 n n 
C3 O3 GOL sing 125 n n 
C3 H31 GOL sing 126 n n 
C3 H32 GOL sing 127 n n 
O3 HO3 GOL sing 128 n n 
#
_atom_sites.entry_id                     5JRM 
_atom_sites.fract_transf_matrix[1][1]    0.009503 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.027866 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.020686 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 GOL A 1 201 1 GOL GOL . 
C 3 SO4 A 1 202 1 SO4 SO4 . 
D 3 SO4 A 1 203 2 SO4 SO4 . 
E 3 SO4 A 1 204 3 SO4 SO4 . 
F 4 HOH A 1 301 179 HOH HOH . 
F 4 HOH A 2 302 141 HOH HOH . 
F 4 HOH A 3 303 20 HOH HOH . 
F 4 HOH A 4 304 15 HOH HOH . 
F 4 HOH A 5 305 175 HOH HOH . 
F 4 HOH A 6 306 26 HOH HOH . 
F 4 HOH A 7 307 137 HOH HOH . 
F 4 HOH A 8 308 72 HOH HOH . 
F 4 HOH A 9 309 112 HOH HOH . 
F 4 HOH A 10 310 25 HOH HOH . 
F 4 HOH A 11 311 10 HOH HOH . 
F 4 HOH A 12 312 30 HOH HOH . 
F 4 HOH A 13 313 7 HOH HOH . 
F 4 HOH A 14 314 192 HOH HOH . 
F 4 HOH A 15 315 172 HOH HOH . 
F 4 HOH A 16 316 125 HOH HOH . 
F 4 HOH A 17 317 66 HOH HOH . 
F 4 HOH A 18 318 61 HOH HOH . 
F 4 HOH A 19 319 188 HOH HOH . 
F 4 HOH A 20 320 143 HOH HOH . 
F 4 HOH A 21 321 90 HOH HOH . 
F 4 HOH A 22 322 65 HOH HOH . 
F 4 HOH A 23 323 95 HOH HOH . 
F 4 HOH A 24 324 144 HOH HOH . 
F 4 HOH A 25 325 57 HOH HOH . 
F 4 HOH A 26 326 12 HOH HOH . 
F 4 HOH A 27 327 59 HOH HOH . 
F 4 HOH A 28 328 153 HOH HOH . 
F 4 HOH A 29 329 37 HOH HOH . 
F 4 HOH A 30 330 2 HOH HOH . 
F 4 HOH A 31 331 123 HOH HOH . 
F 4 HOH A 32 332 84 HOH HOH . 
F 4 HOH A 33 333 138 HOH HOH . 
F 4 HOH A 34 334 130 HOH HOH . 
F 4 HOH A 35 335 3 HOH HOH . 
F 4 HOH A 36 336 48 HOH HOH . 
F 4 HOH A 37 337 83 HOH HOH . 
F 4 HOH A 38 338 68 HOH HOH . 
F 4 HOH A 39 339 34 HOH HOH . 
F 4 HOH A 40 340 6 HOH HOH . 
F 4 HOH A 41 341 76 HOH HOH . 
F 4 HOH A 42 342 96 HOH HOH . 
F 4 HOH A 43 343 17 HOH HOH . 
F 4 HOH A 44 344 93 HOH HOH . 
F 4 HOH A 45 345 11 HOH HOH . 
F 4 HOH A 46 346 67 HOH HOH . 
F 4 HOH A 47 347 105 HOH HOH . 
F 4 HOH A 48 348 63 HOH HOH . 
F 4 HOH A 49 349 70 HOH HOH . 
F 4 HOH A 50 350 46 HOH HOH . 
F 4 HOH A 51 351 22 HOH HOH . 
F 4 HOH A 52 352 32 HOH HOH . 
F 4 HOH A 53 353 5 HOH HOH . 
F 4 HOH A 54 354 50 HOH HOH . 
F 4 HOH A 55 355 92 HOH HOH . 
F 4 HOH A 56 356 42 HOH HOH . 
F 4 HOH A 57 357 19 HOH HOH . 
F 4 HOH A 58 358 100 HOH HOH . 
F 4 HOH A 59 359 23 HOH HOH . 
F 4 HOH A 60 360 9 HOH HOH . 
F 4 HOH A 61 361 75 HOH HOH . 
F 4 HOH A 62 362 126 HOH HOH . 
F 4 HOH A 63 363 8 HOH HOH . 
F 4 HOH A 64 364 139 HOH HOH . 
F 4 HOH A 65 365 29 HOH HOH . 
F 4 HOH A 66 366 120 HOH HOH . 
F 4 HOH A 67 367 86 HOH HOH . 
F 4 HOH A 68 368 74 HOH HOH . 
F 4 HOH A 69 369 13 HOH HOH . 
F 4 HOH A 70 370 52 HOH HOH . 
F 4 HOH A 71 371 33 HOH HOH . 
F 4 HOH A 72 372 117 HOH HOH . 
F 4 HOH A 73 373 1 HOH HOH . 
F 4 HOH A 74 374 38 HOH HOH . 
F 4 HOH A 75 375 56 HOH HOH . 
F 4 HOH A 76 376 146 HOH HOH . 
F 4 HOH A 77 377 4 HOH HOH . 
F 4 HOH A 78 378 36 HOH HOH . 
F 4 HOH A 79 379 134 HOH HOH . 
F 4 HOH A 80 380 60 HOH HOH . 
F 4 HOH A 81 381 40 HOH HOH . 
F 4 HOH A 82 382 47 HOH HOH . 
F 4 HOH A 83 383 157 HOH HOH . 
F 4 HOH A 84 384 16 HOH HOH . 
F 4 HOH A 85 385 14 HOH HOH . 
F 4 HOH A 86 386 155 HOH HOH . 
F 4 HOH A 87 387 27 HOH HOH . 
F 4 HOH A 88 388 136 HOH HOH . 
F 4 HOH A 89 389 24 HOH HOH . 
F 4 HOH A 90 390 189 HOH HOH . 
F 4 HOH A 91 391 54 HOH HOH . 
F 4 HOH A 92 392 128 HOH HOH . 
F 4 HOH A 93 393 69 HOH HOH . 
F 4 HOH A 94 394 127 HOH HOH . 
F 4 HOH A 95 395 45 HOH HOH . 
F 4 HOH A 96 396 31 HOH HOH . 
F 4 HOH A 97 397 156 HOH HOH . 
F 4 HOH A 98 398 182 HOH HOH . 
F 4 HOH A 99 399 81 HOH HOH . 
F 4 HOH A 100 400 142 HOH HOH . 
F 4 HOH A 101 401 49 HOH HOH . 
F 4 HOH A 102 402 73 HOH HOH . 
F 4 HOH A 103 403 80 HOH HOH . 
F 4 HOH A 104 404 97 HOH HOH . 
F 4 HOH A 105 405 41 HOH HOH . 
F 4 HOH A 106 406 44 HOH HOH . 
F 4 HOH A 107 407 18 HOH HOH . 
F 4 HOH A 108 408 166 HOH HOH . 
F 4 HOH A 109 409 154 HOH HOH . 
F 4 HOH A 110 410 77 HOH HOH . 
F 4 HOH A 111 411 165 HOH HOH . 
F 4 HOH A 112 412 87 HOH HOH . 
F 4 HOH A 113 413 101 HOH HOH . 
F 4 HOH A 114 414 116 HOH HOH . 
F 4 HOH A 115 415 152 HOH HOH . 
F 4 HOH A 116 416 163 HOH HOH . 
F 4 HOH A 117 417 121 HOH HOH . 
F 4 HOH A 118 418 21 HOH HOH . 
F 4 HOH A 119 419 148 HOH HOH . 
F 4 HOH A 120 420 89 HOH HOH . 
F 4 HOH A 121 421 185 HOH HOH . 
F 4 HOH A 122 422 64 HOH HOH . 
F 4 HOH A 123 423 71 HOH HOH . 
F 4 HOH A 124 424 88 HOH HOH . 
F 4 HOH A 125 425 39 HOH HOH . 
F 4 HOH A 126 426 28 HOH HOH . 
F 4 HOH A 127 427 53 HOH HOH . 
F 4 HOH A 128 428 140 HOH HOH . 
F 4 HOH A 129 429 193 HOH HOH . 
F 4 HOH A 130 430 194 HOH HOH . 
F 4 HOH A 131 431 111 HOH HOH . 
F 4 HOH A 132 432 159 HOH HOH . 
F 4 HOH A 133 433 124 HOH HOH . 
F 4 HOH A 134 434 176 HOH HOH . 
F 4 HOH A 135 435 98 HOH HOH . 
F 4 HOH A 136 436 195 HOH HOH . 
F 4 HOH A 137 437 145 HOH HOH . 
F 4 HOH A 138 438 82 HOH HOH . 
F 4 HOH A 139 439 149 HOH HOH . 
F 4 HOH A 140 440 51 HOH HOH . 
F 4 HOH A 141 441 119 HOH HOH . 
F 4 HOH A 142 442 167 HOH HOH . 
F 4 HOH A 143 443 107 HOH HOH . 
F 4 HOH A 144 444 78 HOH HOH . 
F 4 HOH A 145 445 102 HOH HOH . 
F 4 HOH A 146 446 79 HOH HOH . 
F 4 HOH A 147 447 103 HOH HOH . 
F 4 HOH A 148 448 109 HOH HOH . 
F 4 HOH A 149 449 91 HOH HOH . 
F 4 HOH A 150 450 113 HOH HOH . 
F 4 HOH A 151 451 62 HOH HOH . 
F 4 HOH A 152 452 55 HOH HOH . 
F 4 HOH A 153 453 178 HOH HOH . 
F 4 HOH A 154 454 131 HOH HOH . 
F 4 HOH A 155 455 168 HOH HOH . 
F 4 HOH A 156 456 170 HOH HOH . 
F 4 HOH A 157 457 115 HOH HOH . 
F 4 HOH A 158 458 162 HOH HOH . 
F 4 HOH A 159 459 181 HOH HOH . 
F 4 HOH A 160 460 132 HOH HOH . 
F 4 HOH A 161 461 150 HOH HOH . 
F 4 HOH A 162 462 114 HOH HOH . 
F 4 HOH A 163 463 35 HOH HOH . 
F 4 HOH A 164 464 110 HOH HOH . 
F 4 HOH A 165 465 85 HOH HOH . 
F 4 HOH A 166 466 106 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . B 2 -13.075 -6.393 -22.564 1 75.88 ? C1 GOL 201 A 1 
HETATM 2 O O1 GOL . . . B 2 -11.734 -6.458 -22.992 1 83.02 ? O1 GOL 201 A 1 
HETATM 3 C C2 GOL . . . B 2 -13.702 -5.131 -23.145 1 69.89 ? C2 GOL 201 A 1 
HETATM 4 O O2 GOL . . . B 2 -15.08 -5.317 -23.378 1 71.57 ? O2 GOL 201 A 1 
HETATM 5 C C3 GOL . . . B 2 -13.489 -3.948 -22.209 1 64.97 ? C3 GOL 201 A 1 
HETATM 6 O O3 GOL . . . B 2 -12.661 -3.001 -22.842 1 63.63 ? O3 GOL 201 A 1 
HETATM 7 H H11 GOL . . . B 2 -13.118 -6.364 -21.475 1 91.06 ? H11 GOL 201 A 1 
HETATM 8 H H12 GOL . . . B 2 -13.62 -7.272 -22.908 1 91.06 ? H12 GOL 201 A 1 
HETATM 9 H HO1 GOL . . . B 2 -11.295 -7.229 -22.575 1 99.62 ? HO1 GOL 201 A 1 
HETATM 10 H H2 GOL . . . B 2 -13.205 -4.909 -24.089 1 83.87 ? H2 GOL 201 A 1 
HETATM 11 H HO2 GOL . . . B 2 -15.536 -5.481 -22.526 1 85.88 ? HO2 GOL 201 A 1 
HETATM 12 H H31 GOL . . . B 2 -13.023 -4.287 -21.284 1 77.96 ? H31 GOL 201 A 1 
HETATM 13 H H32 GOL . . . B 2 -14.449 -3.494 -21.961 1 77.96 ? H32 GOL 201 A 1 
HETATM 14 H HO3 GOL . . . B 2 -12.866 -2.106 -22.498 1 76.35 ? HO3 GOL 201 A 1 
#
_model_server_stats.io_time_ms              63 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           270 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           14 
#