data_5JRN # _model_server_result.job_id GjADDy0oYBLAwmupebg5Rw _model_server_result.datetime_utc '2024-11-29 07:48:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5jrn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":204}' # _entry.id 5JRN # _exptl.entry_id 5JRN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5JRN _cell.length_a 105.7 _cell.length_b 36.1 _cell.length_c 48.8 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5JRN _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 139 n n C1 C2 GOL sing 140 n n C1 H11 GOL sing 141 n n C1 H12 GOL sing 142 n n O1 HO1 GOL sing 143 n n C2 O2 GOL sing 144 n n C2 C3 GOL sing 145 n n C2 H2 GOL sing 146 n n O2 HO2 GOL sing 147 n n C3 O3 GOL sing 148 n n C3 H31 GOL sing 149 n n C3 H32 GOL sing 150 n n O3 HO3 GOL sing 151 n n # _atom_sites.entry_id 5JRN _atom_sites.fract_transf_matrix[1][1] 0.009461 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.027701 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020492 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 201 1 GOL GOL . C 2 GOL A 1 202 2 GOL GOL . D 2 GOL A 1 203 3 GOL GOL . E 2 GOL A 1 204 4 GOL GOL . F 2 GOL A 1 205 5 GOL GOL . G 2 GOL A 1 206 7 GOL GOL . H 2 GOL A 1 207 8 GOL GOL . I 3 6MJ A 1 208 1 6MJ MBX . J 4 HOH A 1 301 14 HOH HOH . J 4 HOH A 2 302 20 HOH HOH . J 4 HOH A 3 303 5 HOH HOH . J 4 HOH A 4 304 9 HOH HOH . J 4 HOH A 5 305 1 HOH HOH . J 4 HOH A 6 306 23 HOH HOH . J 4 HOH A 7 307 18 HOH HOH . J 4 HOH A 8 308 4 HOH HOH . J 4 HOH A 9 309 16 HOH HOH . J 4 HOH A 10 310 15 HOH HOH . J 4 HOH A 11 311 22 HOH HOH . J 4 HOH A 12 312 11 HOH HOH . J 4 HOH A 13 313 8 HOH HOH . J 4 HOH A 14 314 19 HOH HOH . J 4 HOH A 15 315 17 HOH HOH . J 4 HOH A 16 316 2 HOH HOH . J 4 HOH A 17 317 10 HOH HOH . J 4 HOH A 18 318 3 HOH HOH . J 4 HOH A 19 319 7 HOH HOH . J 4 HOH A 20 320 6 HOH HOH . J 4 HOH A 21 321 13 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . E 2 22.944 30.039 19.913 1 82.18 ? C1 GOL 204 A 1 HETATM 2 O O1 GOL . . . E 2 23.481 30.593 18.733 1 78.83 ? O1 GOL 204 A 1 HETATM 3 C C2 GOL . . . E 2 21.568 30.64 20.183 1 78.75 ? C2 GOL 204 A 1 HETATM 4 O O2 GOL . . . E 2 21.44 31.851 19.472 1 71.49 ? O2 GOL 204 A 1 HETATM 5 C C3 GOL . . . E 2 21.419 30.917 21.674 1 74.27 ? C3 GOL 204 A 1 HETATM 6 O O3 GOL . . . E 2 20.091 31.297 21.957 1 83.55 ? O3 GOL 204 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 255 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 6 #