data_5JS5
#
_model_server_result.job_id            Xsn6uSKqnmJ5Tc2-h7B4_A 
_model_server_result.datetime_utc      '2024-11-15 08:40:28' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5js5 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":201}' 
#
_entry.id    5JS5 
#
_exptl.entry_id    5JS5 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              618.503 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'HEME C' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5JS5 
_cell.length_a            53.207 
_cell.length_b            53.207 
_cell.length_c            181.39 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5JS5 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        179 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 65 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 10_665 -y+1,-x+1,-z+1/6 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 26.6035 46.078614 30.231667 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C PCA 1 A PCA 1 1_555 A N PHE 2 A PHE 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.306 ? 
covale ? covale2 A SG CYS 116 A CYS 116 1_555 B CAB HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.801 ? 
metalc ? metalc1 B FE HEC . A HEC 201 1_555 D N NO . A NO 203 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.182 ? 
metalc ? metalc2 B FE HEC . A HEC 201 1_555 D N NO . A NO 203 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.978 ? 
metalc ? metalc3 B FE HEC . A HEC 201 1_555 D O NO . A NO 203 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.702 ? 
#
_chem_comp.formula           'C34 H34 Fe N4 O4' 
_chem_comp.formula_weight    618.503 
_chem_comp.id                HEC 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'HEME C' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
FE NA HEC sing 149 n n 
FE NB HEC sing 150 n n 
FE NC HEC sing 151 n n 
FE ND HEC sing 152 n n 
CHA C1A HEC doub 153 n n 
CHA C4D HEC sing 154 n n 
CHA HHA HEC sing 155 n n 
CHB C4A HEC doub 156 n n 
CHB C1B HEC sing 157 n n 
CHB HHB HEC sing 158 n n 
CHC C4B HEC doub 159 n n 
CHC C1C HEC sing 160 n n 
CHC HHC HEC sing 161 n n 
CHD C4C HEC doub 162 n n 
CHD C1D HEC sing 163 n n 
CHD HHD HEC sing 164 n n 
NA C1A HEC sing 165 n y 
NA C4A HEC sing 166 n y 
C1A C2A HEC sing 167 n y 
C2A C3A HEC doub 168 n y 
C2A CAA HEC sing 169 n n 
C3A C4A HEC sing 170 n y 
C3A CMA HEC sing 171 n n 
CMA HMA1 HEC sing 172 n n 
CMA HMA2 HEC sing 173 n n 
CMA HMA3 HEC sing 174 n n 
CAA CBA HEC sing 175 n n 
CAA HAA1 HEC sing 176 n n 
CAA HAA2 HEC sing 177 n n 
CBA CGA HEC sing 178 n n 
CBA HBA1 HEC sing 179 n n 
CBA HBA2 HEC sing 180 n n 
CGA O1A HEC doub 181 n n 
CGA O2A HEC sing 182 n n 
O2A H2A HEC sing 183 n n 
NB C1B HEC sing 184 n y 
NB C4B HEC sing 185 n y 
C1B C2B HEC doub 186 n y 
C2B C3B HEC sing 187 n y 
C2B CMB HEC sing 188 n n 
C3B C4B HEC sing 189 n y 
C3B CAB HEC doub 190 e n 
CMB HMB1 HEC sing 191 n n 
CMB HMB2 HEC sing 192 n n 
CMB HMB3 HEC sing 193 n n 
CAB CBB HEC sing 194 n n 
CAB HAB HEC sing 195 n n 
CBB HBB1 HEC sing 196 n n 
CBB HBB2 HEC sing 197 n n 
CBB HBB3 HEC sing 198 n n 
NC C1C HEC sing 199 n y 
NC C4C HEC sing 200 n y 
C1C C2C HEC doub 201 n y 
C2C C3C HEC sing 202 n y 
C2C CMC HEC sing 203 n n 
C3C C4C HEC sing 204 n y 
C3C CAC HEC doub 205 e n 
CMC HMC1 HEC sing 206 n n 
CMC HMC2 HEC sing 207 n n 
CMC HMC3 HEC sing 208 n n 
CAC CBC HEC sing 209 n n 
CAC HAC HEC sing 210 n n 
CBC HBC1 HEC sing 211 n n 
CBC HBC2 HEC sing 212 n n 
CBC HBC3 HEC sing 213 n n 
ND C1D HEC sing 214 n y 
ND C4D HEC sing 215 n y 
C1D C2D HEC doub 216 n y 
C2D C3D HEC sing 217 n y 
C2D CMD HEC sing 218 n n 
C3D C4D HEC doub 219 n y 
C3D CAD HEC sing 220 n n 
CMD HMD1 HEC sing 221 n n 
CMD HMD2 HEC sing 222 n n 
CMD HMD3 HEC sing 223 n n 
CAD CBD HEC sing 224 n n 
CAD HAD1 HEC sing 225 n n 
CAD HAD2 HEC sing 226 n n 
CBD CGD HEC sing 227 n n 
CBD HBD1 HEC sing 228 n n 
CBD HBD2 HEC sing 229 n n 
CGD O1D HEC doub 230 n n 
CGD O2D HEC sing 231 n n 
O2D H2D HEC sing 232 n n 
#
_atom_sites.entry_id                     5JS5 
_atom_sites.fract_transf_matrix[1][1]    0.018795 
_atom_sites.fract_transf_matrix[1][2]    0.010851 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.021702 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005513 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 HEC A 1 201 128 HEC MEH . 
C 3 ASC A 1 202 1 ASC ASC . 
D 4 NO A 1 203 1 NO No . 
E 5 HOH A 1 301 58 HOH HOH . 
E 5 HOH A 2 302 19 HOH HOH . 
E 5 HOH A 3 303 82 HOH HOH . 
E 5 HOH A 4 304 111 HOH HOH . 
E 5 HOH A 5 305 65 HOH HOH . 
E 5 HOH A 6 306 41 HOH HOH . 
E 5 HOH A 7 307 16 HOH HOH . 
E 5 HOH A 8 308 50 HOH HOH . 
E 5 HOH A 9 309 47 HOH HOH . 
E 5 HOH A 10 310 7 HOH HOH . 
E 5 HOH A 11 311 3 HOH HOH . 
E 5 HOH A 12 312 5 HOH HOH . 
E 5 HOH A 13 313 59 HOH HOH . 
E 5 HOH A 14 314 14 HOH HOH . 
E 5 HOH A 15 315 80 HOH HOH . 
E 5 HOH A 16 316 17 HOH HOH . 
E 5 HOH A 17 317 93 HOH HOH . 
E 5 HOH A 18 318 8 HOH HOH . 
E 5 HOH A 19 319 92 HOH HOH . 
E 5 HOH A 20 320 52 HOH HOH . 
E 5 HOH A 21 321 109 HOH HOH . 
E 5 HOH A 22 322 74 HOH HOH . 
E 5 HOH A 23 323 102 HOH HOH . 
E 5 HOH A 24 324 49 HOH HOH . 
E 5 HOH A 25 325 64 HOH HOH . 
E 5 HOH A 26 326 11 HOH HOH . 
E 5 HOH A 27 327 54 HOH HOH . 
E 5 HOH A 28 328 24 HOH HOH . 
E 5 HOH A 29 329 67 HOH HOH . 
E 5 HOH A 30 330 100 HOH HOH . 
E 5 HOH A 31 331 27 HOH HOH . 
E 5 HOH A 32 332 46 HOH HOH . 
E 5 HOH A 33 333 96 HOH HOH . 
E 5 HOH A 34 334 20 HOH HOH . 
E 5 HOH A 35 335 115 HOH HOH . 
E 5 HOH A 36 336 88 HOH HOH . 
E 5 HOH A 37 337 18 HOH HOH . 
E 5 HOH A 38 338 1 HOH HOH . 
E 5 HOH A 39 339 13 HOH HOH . 
E 5 HOH A 40 340 87 HOH HOH . 
E 5 HOH A 41 341 22 HOH HOH . 
E 5 HOH A 42 342 68 HOH HOH . 
E 5 HOH A 43 343 122 HOH HOH . 
E 5 HOH A 44 344 37 HOH HOH . 
E 5 HOH A 45 345 79 HOH HOH . 
E 5 HOH A 46 346 25 HOH HOH . 
E 5 HOH A 47 347 81 HOH HOH . 
E 5 HOH A 48 348 89 HOH HOH . 
E 5 HOH A 49 349 126 HOH HOH . 
E 5 HOH A 50 350 10 HOH HOH . 
E 5 HOH A 51 351 21 HOH HOH . 
E 5 HOH A 52 352 6 HOH HOH . 
E 5 HOH A 53 353 4 HOH HOH . 
E 5 HOH A 54 354 23 HOH HOH . 
E 5 HOH A 55 355 53 HOH HOH . 
E 5 HOH A 56 356 60 HOH HOH . 
E 5 HOH A 57 357 2 HOH HOH . 
E 5 HOH A 58 358 128 HOH HOH . 
E 5 HOH A 59 359 77 HOH HOH . 
E 5 HOH A 60 360 12 HOH HOH . 
E 5 HOH A 61 361 86 HOH HOH . 
E 5 HOH A 62 362 9 HOH HOH . 
E 5 HOH A 63 363 69 HOH HOH . 
E 5 HOH A 64 364 119 HOH HOH . 
E 5 HOH A 65 365 40 HOH HOH . 
E 5 HOH A 66 366 76 HOH HOH . 
E 5 HOH A 67 367 104 HOH HOH . 
E 5 HOH A 68 368 98 HOH HOH . 
E 5 HOH A 69 369 90 HOH HOH . 
E 5 HOH A 70 370 56 HOH HOH . 
E 5 HOH A 71 371 66 HOH HOH . 
E 5 HOH A 72 372 118 HOH HOH . 
E 5 HOH A 73 373 84 HOH HOH . 
E 5 HOH A 74 374 38 HOH HOH . 
E 5 HOH A 75 375 34 HOH HOH . 
E 5 HOH A 76 376 94 HOH HOH . 
E 5 HOH A 77 377 45 HOH HOH . 
E 5 HOH A 78 378 91 HOH HOH . 
E 5 HOH A 79 379 57 HOH HOH . 
E 5 HOH A 80 380 26 HOH HOH . 
E 5 HOH A 81 381 62 HOH HOH . 
E 5 HOH A 82 382 105 HOH HOH . 
E 5 HOH A 83 383 72 HOH HOH . 
E 5 HOH A 84 384 129 HOH HOH . 
E 5 HOH A 85 385 36 HOH HOH . 
E 5 HOH A 86 386 106 HOH HOH . 
E 5 HOH A 87 387 28 HOH HOH . 
E 5 HOH A 88 388 108 HOH HOH . 
E 5 HOH A 89 389 120 HOH HOH . 
E 5 HOH A 90 390 85 HOH HOH . 
E 5 HOH A 91 391 42 HOH HOH . 
E 5 HOH A 92 392 83 HOH HOH . 
E 5 HOH A 93 393 70 HOH HOH . 
E 5 HOH A 94 394 117 HOH HOH . 
E 5 HOH A 95 395 61 HOH HOH . 
E 5 HOH A 96 396 43 HOH HOH . 
E 5 HOH A 97 397 78 HOH HOH . 
E 5 HOH A 98 398 30 HOH HOH . 
E 5 HOH A 99 399 29 HOH HOH . 
E 5 HOH A 100 400 97 HOH HOH . 
E 5 HOH A 101 401 116 HOH HOH . 
E 5 HOH A 102 402 107 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 FE FE HEC . . . B 2 6.275 39.059 21.791 1 29.14 ? FE HEC 201 A 1 
HETATM 2 C CHA HEC . . . B 2 7.809 36.008 21.57 1 29.44 ? CHA HEC 201 A 1 
HETATM 3 C CHB HEC . . . B 2 6.477 39.371 18.421 1 28.18 ? CHB HEC 201 A 1 
HETATM 4 C CHC HEC . . . B 2 4.149 41.651 21.901 1 26.38 ? CHC HEC 201 A 1 
HETATM 5 C CHD HEC . . . B 2 5.973 38.741 25.064 1 29.26 ? CHD HEC 201 A 1 
HETATM 6 N NA HEC . . . B 2 6.981 37.906 20.254 1 28.89 ? NA HEC 201 A 1 
HETATM 7 C C1A HEC . . . B 2 7.608 36.693 20.353 1 28.94 ? C1A HEC 201 A 1 
HETATM 8 C C2A HEC . . . B 2 7.991 36.218 19.098 1 30 ? C2A HEC 201 A 1 
HETATM 9 C C3A HEC . . . B 2 7.627 37.209 18.204 1 29.13 ? C3A HEC 201 A 1 
HETATM 10 C C4A HEC . . . B 2 7.04 38.215 18.961 1 28.55 ? C4A HEC 201 A 1 
HETATM 11 C CMA HEC . . . B 2 7.798 37.177 16.694 1 29.89 ? CMA HEC 201 A 1 
HETATM 12 C CAA HEC . . . B 2 8.685 34.914 18.76 1 30.99 ? CAA HEC 201 A 1 
HETATM 13 C CBA HEC . . . B 2 7.711 33.74 18.654 1 31.74 ? CBA HEC 201 A 1 
HETATM 14 C CGA HEC . . . B 2 8.354 32.436 18.234 1 33.88 ? CGA HEC 201 A 1 
HETATM 15 O O1A HEC . . . B 2 8.985 31.772 19.091 1 33.99 ? O1A HEC 201 A 1 
HETATM 16 O O2A HEC . . . B 2 8.234 32.072 17.083 1 36.17 ? O2A HEC 201 A 1 
HETATM 17 N NB HEC . . . B 2 5.467 40.238 20.401 1 27.62 ? NB HEC 201 A 1 
HETATM 18 C C1B HEC . . . B 2 5.643 40.263 19.054 1 27.74 ? C1B HEC 201 A 1 
HETATM 19 C C2B HEC . . . B 2 4.941 41.311 18.477 1 27.77 ? C2B HEC 201 A 1 
HETATM 20 C C3B HEC . . . B 2 4.252 41.969 19.487 1 27.54 ? C3B HEC 201 A 1 
HETATM 21 C C4B HEC . . . B 2 4.622 41.261 20.652 1 27.25 ? C4B HEC 201 A 1 
HETATM 22 C CMB HEC . . . B 2 4.89 41.716 17.042 1 27.61 ? CMB HEC 201 A 1 
HETATM 23 C CAB HEC . . . B 2 3.34 43.215 19.382 1 28.56 ? CAB HEC 201 A 1 
HETATM 24 C CBB HEC . . . B 2 2.362 43.148 18.207 1 27.85 ? CBB HEC 201 A 1 
HETATM 25 N NC HEC . . . B 2 5.235 40.035 23.215 1 27.27 ? NC HEC 201 A 1 
HETATM 26 C C1C HEC . . . B 2 4.481 41.14 23.141 1 27.24 ? C1C HEC 201 A 1 
HETATM 27 C C2C HEC . . . B 2 4.009 41.63 24.35 1 27.04 ? C2C HEC 201 A 1 
HETATM 28 C C3C HEC . . . B 2 4.543 40.779 25.285 1 28.31 ? C3C HEC 201 A 1 
HETATM 29 C C4C HEC . . . B 2 5.251 39.822 24.525 1 28.38 ? C4C HEC 201 A 1 
HETATM 30 C CMC HEC . . . B 2 3.163 42.812 24.605 1 26.73 ? CMC HEC 201 A 1 
HETATM 31 C CAC HEC . . . B 2 4.32 40.759 26.819 1 28.95 ? CAC HEC 201 A 1 
HETATM 32 C CBC HEC . . . B 2 3.275 41.61 27.486 1 28.84 ? CBC HEC 201 A 1 
HETATM 33 N ND HEC . . . B 2 6.778 37.593 23.037 1 29.4 ? ND HEC 201 A 1 
HETATM 34 C C1D HEC . . . B 2 6.638 37.701 24.405 1 29.22 ? C1D HEC 201 A 1 
HETATM 35 C C2D HEC . . . B 2 7.243 36.618 25.098 1 29.54 ? C2D HEC 201 A 1 
HETATM 36 C C3D HEC . . . B 2 7.752 35.836 24.089 1 29.78 ? C3D HEC 201 A 1 
HETATM 37 C C4D HEC . . . B 2 7.467 36.476 22.867 1 29.53 ? C4D HEC 201 A 1 
HETATM 38 C CMD HEC . . . B 2 7.318 36.365 26.609 1 29.89 ? CMD HEC 201 A 1 
HETATM 39 C CAD HEC . . . B 2 8.476 34.524 24.256 1 30.18 ? CAD HEC 201 A 1 
HETATM 40 C CBD HEC . . . B 2 7.476 33.37 24.077 1 29.53 ? CBD HEC 201 A 1 
HETATM 41 C CGD HEC . . . B 2 8.074 31.976 24.245 1 29.87 ? CGD HEC 201 A 1 
HETATM 42 O O1D HEC . . . B 2 9.064 31.639 23.573 1 29.73 ? O1D HEC 201 A 1 
HETATM 43 O O2D HEC . . . B 2 7.604 31.19 25.118 1 30.56 ? O2D HEC 201 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           27 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           261 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           43 
#