data_5JS5 # _model_server_result.job_id AXeC2ZfwJW39EeC_3kpkMA _model_server_result.datetime_utc '2024-11-15 08:39:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5js5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":203}' # _entry.id 5JS5 # _exptl.entry_id 5JS5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 30.006 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NITRIC OXIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5JS5 _cell.length_a 53.207 _cell.length_b 53.207 _cell.length_c 181.39 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5JS5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 10_665 -y+1,-x+1,-z+1/6 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 26.6035 46.078614 30.231667 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C PCA 1 A PCA 1 1_555 A N PHE 2 A PHE 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.306 ? covale ? covale2 A SG CYS 116 A CYS 116 1_555 B CAB HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.801 ? metalc ? metalc1 B FE HEC . A HEC 201 1_555 D N NO . A NO 203 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.182 ? metalc ? metalc2 B FE HEC . A HEC 201 1_555 D N NO . A NO 203 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.978 ? metalc ? metalc3 B FE HEC . A HEC 201 1_555 D O NO . A NO 203 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.702 ? # _chem_comp.formula 'N O' _chem_comp.formula_weight 30.006 _chem_comp.id NO _chem_comp.mon_nstd_flag . _chem_comp.name 'NITRIC OXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'Nitrogen monoxide' # _chem_comp_bond.atom_id_1 N _chem_comp_bond.atom_id_2 O _chem_comp_bond.comp_id NO _chem_comp_bond.value_order doub _chem_comp_bond.pdbx_ordinal 341 _chem_comp_bond.pdbx_stereo_config n _chem_comp_bond.pdbx_aromatic_flag n # _atom_sites.entry_id 5JS5 _atom_sites.fract_transf_matrix[1][1] 0.018795 _atom_sites.fract_transf_matrix[1][2] 0.010851 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021702 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005513 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEC A 1 201 128 HEC MEH . C 3 ASC A 1 202 1 ASC ASC . D 4 NO A 1 203 1 NO No . E 5 HOH A 1 301 58 HOH HOH . E 5 HOH A 2 302 19 HOH HOH . E 5 HOH A 3 303 82 HOH HOH . E 5 HOH A 4 304 111 HOH HOH . E 5 HOH A 5 305 65 HOH HOH . E 5 HOH A 6 306 41 HOH HOH . E 5 HOH A 7 307 16 HOH HOH . E 5 HOH A 8 308 50 HOH HOH . E 5 HOH A 9 309 47 HOH HOH . E 5 HOH A 10 310 7 HOH HOH . E 5 HOH A 11 311 3 HOH HOH . E 5 HOH A 12 312 5 HOH HOH . E 5 HOH A 13 313 59 HOH HOH . E 5 HOH A 14 314 14 HOH HOH . E 5 HOH A 15 315 80 HOH HOH . E 5 HOH A 16 316 17 HOH HOH . E 5 HOH A 17 317 93 HOH HOH . E 5 HOH A 18 318 8 HOH HOH . E 5 HOH A 19 319 92 HOH HOH . E 5 HOH A 20 320 52 HOH HOH . E 5 HOH A 21 321 109 HOH HOH . E 5 HOH A 22 322 74 HOH HOH . E 5 HOH A 23 323 102 HOH HOH . E 5 HOH A 24 324 49 HOH HOH . E 5 HOH A 25 325 64 HOH HOH . E 5 HOH A 26 326 11 HOH HOH . E 5 HOH A 27 327 54 HOH HOH . E 5 HOH A 28 328 24 HOH HOH . E 5 HOH A 29 329 67 HOH HOH . E 5 HOH A 30 330 100 HOH HOH . E 5 HOH A 31 331 27 HOH HOH . E 5 HOH A 32 332 46 HOH HOH . E 5 HOH A 33 333 96 HOH HOH . E 5 HOH A 34 334 20 HOH HOH . E 5 HOH A 35 335 115 HOH HOH . E 5 HOH A 36 336 88 HOH HOH . E 5 HOH A 37 337 18 HOH HOH . E 5 HOH A 38 338 1 HOH HOH . E 5 HOH A 39 339 13 HOH HOH . E 5 HOH A 40 340 87 HOH HOH . E 5 HOH A 41 341 22 HOH HOH . E 5 HOH A 42 342 68 HOH HOH . E 5 HOH A 43 343 122 HOH HOH . E 5 HOH A 44 344 37 HOH HOH . E 5 HOH A 45 345 79 HOH HOH . E 5 HOH A 46 346 25 HOH HOH . E 5 HOH A 47 347 81 HOH HOH . E 5 HOH A 48 348 89 HOH HOH . E 5 HOH A 49 349 126 HOH HOH . E 5 HOH A 50 350 10 HOH HOH . E 5 HOH A 51 351 21 HOH HOH . E 5 HOH A 52 352 6 HOH HOH . E 5 HOH A 53 353 4 HOH HOH . E 5 HOH A 54 354 23 HOH HOH . E 5 HOH A 55 355 53 HOH HOH . E 5 HOH A 56 356 60 HOH HOH . E 5 HOH A 57 357 2 HOH HOH . E 5 HOH A 58 358 128 HOH HOH . E 5 HOH A 59 359 77 HOH HOH . E 5 HOH A 60 360 12 HOH HOH . E 5 HOH A 61 361 86 HOH HOH . E 5 HOH A 62 362 9 HOH HOH . E 5 HOH A 63 363 69 HOH HOH . E 5 HOH A 64 364 119 HOH HOH . E 5 HOH A 65 365 40 HOH HOH . E 5 HOH A 66 366 76 HOH HOH . E 5 HOH A 67 367 104 HOH HOH . E 5 HOH A 68 368 98 HOH HOH . E 5 HOH A 69 369 90 HOH HOH . E 5 HOH A 70 370 56 HOH HOH . E 5 HOH A 71 371 66 HOH HOH . E 5 HOH A 72 372 118 HOH HOH . E 5 HOH A 73 373 84 HOH HOH . E 5 HOH A 74 374 38 HOH HOH . E 5 HOH A 75 375 34 HOH HOH . E 5 HOH A 76 376 94 HOH HOH . E 5 HOH A 77 377 45 HOH HOH . E 5 HOH A 78 378 91 HOH HOH . E 5 HOH A 79 379 57 HOH HOH . E 5 HOH A 80 380 26 HOH HOH . E 5 HOH A 81 381 62 HOH HOH . E 5 HOH A 82 382 105 HOH HOH . E 5 HOH A 83 383 72 HOH HOH . E 5 HOH A 84 384 129 HOH HOH . E 5 HOH A 85 385 36 HOH HOH . E 5 HOH A 86 386 106 HOH HOH . E 5 HOH A 87 387 28 HOH HOH . E 5 HOH A 88 388 108 HOH HOH . E 5 HOH A 89 389 120 HOH HOH . E 5 HOH A 90 390 85 HOH HOH . E 5 HOH A 91 391 42 HOH HOH . E 5 HOH A 92 392 83 HOH HOH . E 5 HOH A 93 393 70 HOH HOH . E 5 HOH A 94 394 117 HOH HOH . E 5 HOH A 95 395 61 HOH HOH . E 5 HOH A 96 396 43 HOH HOH . E 5 HOH A 97 397 78 HOH HOH . E 5 HOH A 98 398 30 HOH HOH . E 5 HOH A 99 399 29 HOH HOH . E 5 HOH A 100 400 97 HOH HOH . E 5 HOH A 101 401 116 HOH HOH . E 5 HOH A 102 402 107 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N NO . A . D 4 8.109 40.207 22.072 0.5 40.65 ? N NO 203 A 1 HETATM 2 N N NO . B . D 4 7.998 40.013 21.971 0.5 32.28 ? N NO 203 A 1 HETATM 3 O O NO . A . D 4 8.51 40.818 21.176 0.5 39.18 ? O NO 203 A 1 HETATM 4 O O NO . B . D 4 8.221 40.513 22.973 0.5 31.11 ? O NO 203 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 4 #