data_5JSF
#
_model_server_result.job_id            mvO8Jz9RJT45EO8CEdiybw 
_model_server_result.datetime_utc      '2024-11-14 20:05:39' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5jsf 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":301}' 
#
_entry.id    5JSF 
#
_exptl.entry_id    5JSF 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              663.425 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            NICOTINAMIDE-ADENINE-DINUCLEOTIDE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5JSF 
_cell.length_a            130.256 
_cell.length_b            130.256 
_cell.length_c            130.256 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5JSF 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        197 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 2 3' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3,4 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 
3 'crystal symmetry operation' 3_556 -x,y,-z+1 -1 0 0 0 1 0 0 0 -1 0 0 130.256 
4 'crystal symmetry operation' 4_556 x,-y,-z+1 1 0 0 0 -1 0 0 0 -1 0 0 130.256 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O GLU 52 A GLU 50 1_555 C NA NA . A NA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.499 ? 
metalc ? metalc2 A O LEU 55 A LEU 53 1_555 C NA NA . A NA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.772 ? 
metalc ? metalc3 A O ALA 58 A ALA 56 1_555 C NA NA . A NA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? 
#
_chem_comp.formula           'C21 H27 N7 O14 P2' 
_chem_comp.formula_weight    663.425 
_chem_comp.id                NAD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              NICOTINAMIDE-ADENINE-DINUCLEOTIDE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAD doub 237 n n 
PA O2A NAD sing 238 n n 
PA O5B NAD sing 239 n n 
PA O3 NAD sing 240 n n 
O2A HOA2 NAD sing 241 n n 
O5B C5B NAD sing 242 n n 
C5B C4B NAD sing 243 n n 
C5B H51A NAD sing 244 n n 
C5B H52A NAD sing 245 n n 
C4B O4B NAD sing 246 n n 
C4B C3B NAD sing 247 n n 
C4B H4B NAD sing 248 n n 
O4B C1B NAD sing 249 n n 
C3B O3B NAD sing 250 n n 
C3B C2B NAD sing 251 n n 
C3B H3B NAD sing 252 n n 
O3B HO3A NAD sing 253 n n 
C2B O2B NAD sing 254 n n 
C2B C1B NAD sing 255 n n 
C2B H2B NAD sing 256 n n 
O2B HO2A NAD sing 257 n n 
C1B N9A NAD sing 258 n n 
C1B H1B NAD sing 259 n n 
N9A C8A NAD sing 260 n y 
N9A C4A NAD sing 261 n y 
C8A N7A NAD doub 262 n y 
C8A H8A NAD sing 263 n n 
N7A C5A NAD sing 264 n y 
C5A C6A NAD sing 265 n y 
C5A C4A NAD doub 266 n y 
C6A N6A NAD sing 267 n n 
C6A N1A NAD doub 268 n y 
N6A H61A NAD sing 269 n n 
N6A H62A NAD sing 270 n n 
N1A C2A NAD sing 271 n y 
C2A N3A NAD doub 272 n y 
C2A H2A NAD sing 273 n n 
N3A C4A NAD sing 274 n y 
O3 PN NAD sing 275 n n 
PN O1N NAD doub 276 n n 
PN O2N NAD sing 277 n n 
PN O5D NAD sing 278 n n 
O5D C5D NAD sing 279 n n 
C5D C4D NAD sing 280 n n 
C5D H51N NAD sing 281 n n 
C5D H52N NAD sing 282 n n 
C4D O4D NAD sing 283 n n 
C4D C3D NAD sing 284 n n 
C4D H4D NAD sing 285 n n 
O4D C1D NAD sing 286 n n 
C3D O3D NAD sing 287 n n 
C3D C2D NAD sing 288 n n 
C3D H3D NAD sing 289 n n 
O3D HO3N NAD sing 290 n n 
C2D O2D NAD sing 291 n n 
C2D C1D NAD sing 292 n n 
C2D H2D NAD sing 293 n n 
O2D HO2N NAD sing 294 n n 
C1D N1N NAD sing 295 n n 
C1D H1D NAD sing 296 n n 
N1N C2N NAD sing 297 n y 
N1N C6N NAD doub 298 n y 
C2N C3N NAD doub 299 n y 
C2N H2N NAD sing 300 n n 
C3N C7N NAD sing 301 n n 
C3N C4N NAD sing 302 n y 
C7N O7N NAD doub 303 n n 
C7N N7N NAD sing 304 n n 
N7N H71N NAD sing 305 n n 
N7N H72N NAD sing 306 n n 
C4N C5N NAD doub 307 n y 
C4N H4N NAD sing 308 n n 
C5N C6N NAD sing 309 n y 
C5N H5N NAD sing 310 n n 
C6N H6N NAD sing 311 n n 
#
_atom_sites.entry_id                     5JSF 
_atom_sites.fract_transf_matrix[1][1]    0.007677 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007677 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007677 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NAD A 1 301 1 NAD NAD . 
C 3 NA A 1 302 1 NA NA . 
D 4 PGE A 1 303 1 PGE PGE . 
E 5 CL A 1 304 1 CL CL . 
F 6 HOH A 1 401 89 HOH HOH . 
F 6 HOH A 2 402 32 HOH HOH . 
F 6 HOH A 3 403 107 HOH HOH . 
F 6 HOH A 4 404 108 HOH HOH . 
F 6 HOH A 5 405 60 HOH HOH . 
F 6 HOH A 6 406 72 HOH HOH . 
F 6 HOH A 7 407 23 HOH HOH . 
F 6 HOH A 8 408 11 HOH HOH . 
F 6 HOH A 9 409 113 HOH HOH . 
F 6 HOH A 10 410 19 HOH HOH . 
F 6 HOH A 11 411 43 HOH HOH . 
F 6 HOH A 12 412 51 HOH HOH . 
F 6 HOH A 13 413 4 HOH HOH . 
F 6 HOH A 14 414 55 HOH HOH . 
F 6 HOH A 15 415 22 HOH HOH . 
F 6 HOH A 16 416 44 HOH HOH . 
F 6 HOH A 17 417 109 HOH HOH . 
F 6 HOH A 18 418 5 HOH HOH . 
F 6 HOH A 19 419 3 HOH HOH . 
F 6 HOH A 20 420 16 HOH HOH . 
F 6 HOH A 21 421 47 HOH HOH . 
F 6 HOH A 22 422 66 HOH HOH . 
F 6 HOH A 23 423 40 HOH HOH . 
F 6 HOH A 24 424 24 HOH HOH . 
F 6 HOH A 25 425 14 HOH HOH . 
F 6 HOH A 26 426 77 HOH HOH . 
F 6 HOH A 27 427 34 HOH HOH . 
F 6 HOH A 28 428 37 HOH HOH . 
F 6 HOH A 29 429 30 HOH HOH . 
F 6 HOH A 30 430 33 HOH HOH . 
F 6 HOH A 31 431 15 HOH HOH . 
F 6 HOH A 32 432 27 HOH HOH . 
F 6 HOH A 33 433 49 HOH HOH . 
F 6 HOH A 34 434 106 HOH HOH . 
F 6 HOH A 35 435 21 HOH HOH . 
F 6 HOH A 36 436 9 HOH HOH . 
F 6 HOH A 37 437 67 HOH HOH . 
F 6 HOH A 38 438 26 HOH HOH . 
F 6 HOH A 39 439 6 HOH HOH . 
F 6 HOH A 40 440 18 HOH HOH . 
F 6 HOH A 41 441 88 HOH HOH . 
F 6 HOH A 42 442 10 HOH HOH . 
F 6 HOH A 43 443 121 HOH HOH . 
F 6 HOH A 44 444 79 HOH HOH . 
F 6 HOH A 45 445 36 HOH HOH . 
F 6 HOH A 46 446 52 HOH HOH . 
F 6 HOH A 47 447 31 HOH HOH . 
F 6 HOH A 48 448 117 HOH HOH . 
F 6 HOH A 49 449 42 HOH HOH . 
F 6 HOH A 50 450 118 HOH HOH . 
F 6 HOH A 51 451 112 HOH HOH . 
F 6 HOH A 52 452 8 HOH HOH . 
F 6 HOH A 53 453 57 HOH HOH . 
F 6 HOH A 54 454 17 HOH HOH . 
F 6 HOH A 55 455 105 HOH HOH . 
F 6 HOH A 56 456 2 HOH HOH . 
F 6 HOH A 57 457 65 HOH HOH . 
F 6 HOH A 58 458 45 HOH HOH . 
F 6 HOH A 59 459 12 HOH HOH . 
F 6 HOH A 60 460 111 HOH HOH . 
F 6 HOH A 61 461 69 HOH HOH . 
F 6 HOH A 62 462 1 HOH HOH . 
F 6 HOH A 63 463 68 HOH HOH . 
F 6 HOH A 64 464 62 HOH HOH . 
F 6 HOH A 65 465 123 HOH HOH . 
F 6 HOH A 66 466 41 HOH HOH . 
F 6 HOH A 67 467 102 HOH HOH . 
F 6 HOH A 68 468 81 HOH HOH . 
F 6 HOH A 69 469 85 HOH HOH . 
F 6 HOH A 70 470 46 HOH HOH . 
F 6 HOH A 71 471 110 HOH HOH . 
F 6 HOH A 72 472 99 HOH HOH . 
F 6 HOH A 73 473 124 HOH HOH . 
F 6 HOH A 74 474 133 HOH HOH . 
F 6 HOH A 75 475 48 HOH HOH . 
F 6 HOH A 76 476 7 HOH HOH . 
F 6 HOH A 77 477 50 HOH HOH . 
F 6 HOH A 78 478 116 HOH HOH . 
F 6 HOH A 79 479 91 HOH HOH . 
F 6 HOH A 80 480 134 HOH HOH . 
F 6 HOH A 81 481 128 HOH HOH . 
F 6 HOH A 82 482 126 HOH HOH . 
F 6 HOH A 83 483 136 HOH HOH . 
F 6 HOH A 84 484 120 HOH HOH . 
F 6 HOH A 85 485 135 HOH HOH . 
F 6 HOH A 86 486 119 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAD . . . B 2 -15.771 -12.598 46.433 1 41.09 ? PA NAD 301 A 1 
HETATM 2 O O1A NAD . . . B 2 -14.945 -13.067 45.303 1 42.4 ? O1A NAD 301 A 1 
HETATM 3 O O2A NAD . . . B 2 -16.56 -13.639 47.174 1 38.71 ? O2A NAD 301 A 1 
HETATM 4 O O5B NAD . . . B 2 -16.769 -11.406 45.906 1 40.74 ? O5B NAD 301 A 1 
HETATM 5 C C5B NAD . . . B 2 -16.174 -10.299 45.199 1 41.52 ? C5B NAD 301 A 1 
HETATM 6 C C4B NAD . . . B 2 -17.174 -9.674 44.263 1 38.04 ? C4B NAD 301 A 1 
HETATM 7 O O4B NAD . . . B 2 -16.535 -8.584 43.56 1 41.03 ? O4B NAD 301 A 1 
HETATM 8 C C3B NAD . . . B 2 -17.745 -10.615 43.187 1 43.7 ? C3B NAD 301 A 1 
HETATM 9 O O3B NAD . . . B 2 -19.154 -10.469 43.032 1 42.28 ? O3B NAD 301 A 1 
HETATM 10 C C2B NAD . . . B 2 -16.998 -10.186 41.924 1 44.97 ? C2B NAD 301 A 1 
HETATM 11 O O2B NAD . . . B 2 -17.715 -10.413 40.714 1 43.18 ? O2B NAD 301 A 1 
HETATM 12 C C1B NAD . . . B 2 -16.831 -8.69 42.184 1 38.13 ? C1B NAD 301 A 1 
HETATM 13 N N9A NAD . . . B 2 -15.758 -8.086 41.407 1 42.26 ? N9A NAD 301 A 1 
HETATM 14 C C8A NAD . . . B 2 -14.513 -8.612 41.172 1 40 ? C8A NAD 301 A 1 
HETATM 15 N N7A NAD . . . B 2 -13.806 -7.943 40.296 1 43.61 ? N7A NAD 301 A 1 
HETATM 16 C C5A NAD . . . B 2 -14.635 -6.886 39.938 1 43.25 ? C5A NAD 301 A 1 
HETATM 17 C C6A NAD . . . B 2 -14.472 -5.814 39.045 1 42.22 ? C6A NAD 301 A 1 
HETATM 18 N N6A NAD . . . B 2 -13.408 -5.652 38.253 1 42.21 ? N6A NAD 301 A 1 
HETATM 19 N N1A NAD . . . B 2 -15.481 -4.921 38.95 1 42.79 ? N1A NAD 301 A 1 
HETATM 20 C C2A NAD . . . B 2 -16.58 -5.111 39.685 1 38.26 ? C2A NAD 301 A 1 
HETATM 21 N N3A NAD . . . B 2 -16.858 -6.096 40.544 1 41.83 ? N3A NAD 301 A 1 
HETATM 22 C C4A NAD . . . B 2 -15.835 -6.959 40.628 1 41.71 ? C4A NAD 301 A 1 
HETATM 23 O O3 NAD . . . B 2 -14.827 -11.954 47.55 1 35.66 ? O3 NAD 301 A 1 
HETATM 24 P PN NAD . . . B 2 -14.978 -11.649 49.106 1 36.5 ? PN NAD 301 A 1 
HETATM 25 O O1N NAD . . . B 2 -14.293 -12.675 49.922 1 36.29 ? O1N NAD 301 A 1 
HETATM 26 O O2N NAD . . . B 2 -16.381 -11.304 49.429 1 38.62 ? O2N NAD 301 A 1 
HETATM 27 O O5D NAD . . . B 2 -14.079 -10.32 49.239 1 38.07 ? O5D NAD 301 A 1 
HETATM 28 C C5D NAD . . . B 2 -14.621 -8.996 49.055 1 37.29 ? C5D NAD 301 A 1 
HETATM 29 C C4D NAD . . . B 2 -13.572 -7.994 49.489 1 28.89 ? C4D NAD 301 A 1 
HETATM 30 O O4D NAD . . . B 2 -13.127 -8.322 50.824 1 33.63 ? O4D NAD 301 A 1 
HETATM 31 C C3D NAD . . . B 2 -12.313 -7.968 48.611 1 37.93 ? C3D NAD 301 A 1 
HETATM 32 O O3D NAD . . . B 2 -11.831 -6.632 48.429 1 39.59 ? O3D NAD 301 A 1 
HETATM 33 C C2D NAD . . . B 2 -11.343 -8.842 49.408 1 42.11 ? C2D NAD 301 A 1 
HETATM 34 O O2D NAD . . . B 2 -9.977 -8.566 49.11 1 37.84 ? O2D NAD 301 A 1 
HETATM 35 C C1D NAD . . . B 2 -11.728 -8.426 50.818 1 35.3 ? C1D NAD 301 A 1 
HETATM 36 N N1N NAD . . . B 2 -11.307 -9.371 51.932 1 36.26 ? N1N NAD 301 A 1 
HETATM 37 C C2N NAD . . . B 2 -11.84 -10.606 51.977 1 32.05 ? C2N NAD 301 A 1 
HETATM 38 C C3N NAD . . . B 2 -11.445 -11.492 52.96 1 33.01 ? C3N NAD 301 A 1 
HETATM 39 C C7N NAD . . . B 2 -12.007 -12.873 53.104 1 32.38 ? C7N NAD 301 A 1 
HETATM 40 O O7N NAD . . . B 2 -11.566 -13.608 53.99 1 31.46 ? O7N NAD 301 A 1 
HETATM 41 N N7N NAD . . . B 2 -12.956 -13.25 52.252 1 34.73 ? N7N NAD 301 A 1 
HETATM 42 C C4N NAD . . . B 2 -10.492 -11.081 53.885 1 36.3 ? C4N NAD 301 A 1 
HETATM 43 C C5N NAD . . . B 2 -9.973 -9.8 53.82 1 36.48 ? C5N NAD 301 A 1 
HETATM 44 C C6N NAD . . . B 2 -10.395 -8.956 52.833 1 32.37 ? C6N NAD 301 A 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           352 
_model_server_stats.encode_time_ms          27 
_model_server_stats.element_count           44 
#