data_5JSI # _model_server_result.job_id xYQzx5mGkhh1Az-7laxFkg _model_server_result.datetime_utc '2024-11-27 01:15:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5jsi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"X","auth_seq_id":322}' # _entry.id 5JSI # _exptl.entry_id 5JSI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 63.61 _cell.angle_beta 78.48 _cell.angle_gamma 80.21 _cell.entry_id 5JSI _cell.length_a 40.793 _cell.length_b 56.771 _cell.length_c 57.286 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5JSI _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id X _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ASN 199 A ASN 199 1_555 A N LYR 200 A LYR 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.349 ? covale ? covale2 A C LYR 200 A LYR 200 1_555 A N VAL 201 A VAL 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale3 B C ASN 199 B ASN 199 1_555 B N LYR 200 B LYR 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale4 B C LYR 200 B LYR 200 1_555 B N VAL 201 B VAL 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id OLC _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-Oleoyl-R-glycerol # _atom_sites.entry_id 5JSI _atom_sites.fract_transf_matrix[1][1] 0.024514 _atom_sites.fract_transf_matrix[1][2] -0.004229 _atom_sites.fract_transf_matrix[1][3] -0.003533 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017875 _atom_sites.fract_transf_matrix[2][3] -0.008398 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019683 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 LFA A 1 301 1 LFA LFA . D 2 LFA A 1 302 3 LFA LFA . E 2 LFA A 1 303 4 LFA LFA . F 2 LFA A 1 304 7 LFA LFA . G 2 LFA A 1 305 8 LFA LFA . H 2 LFA A 1 306 9 LFA LFA . I 2 LFA A 1 307 10 LFA LFA . J 2 LFA A 1 308 13 LFA LFA . K 2 LFA A 1 309 15 LFA LFA . L 2 LFA A 1 310 17 LFA LFA . M 2 LFA A 1 311 21 LFA LFA . N 2 LFA A 1 312 22 LFA LFA . O 3 IOD A 1 313 1 IOD IOD . P 3 IOD A 1 314 2 IOD IOD . Q 3 IOD A 1 315 3 IOD IOD . R 3 IOD A 1 316 4 IOD IOD . S 3 IOD A 1 317 12 IOD IOD . T 3 IOD A 1 318 13 IOD IOD . U 3 IOD A 1 319 19 IOD IOD . V 3 IOD A 1 320 20 IOD IOD . W 3 IOD A 1 321 21 IOD IOD . X 4 OLC A 1 322 1 OLC OLC . Y 2 LFA B 1 301 2 LFA LFA . Z 2 LFA B 1 302 5 LFA LFA . AA 2 LFA B 1 303 6 LFA LFA . BA 2 LFA B 1 304 11 LFA LFA . CA 2 LFA B 1 305 12 LFA LFA . DA 2 LFA B 1 306 14 LFA LFA . EA 2 LFA B 1 307 16 LFA LFA . FA 2 LFA B 1 308 18 LFA LFA . GA 2 LFA B 1 309 19 LFA LFA . HA 2 LFA B 1 310 20 LFA LFA . IA 3 IOD B 1 311 5 IOD IOD . JA 3 IOD B 1 312 6 IOD IOD . KA 3 IOD B 1 313 7 IOD IOD . LA 3 IOD B 1 314 8 IOD IOD . MA 3 IOD B 1 315 9 IOD IOD . NA 3 IOD B 1 316 10 IOD IOD . OA 3 IOD B 1 317 11 IOD IOD . PA 3 IOD B 1 318 14 IOD IOD . QA 3 IOD B 1 319 15 IOD IOD . RA 3 IOD B 1 320 16 IOD IOD . SA 3 IOD B 1 321 17 IOD IOD . TA 3 IOD B 1 322 18 IOD IOD . UA 3 IOD B 1 323 22 IOD IOD . VA 5 HOH A 1 401 8 HOH HOH . VA 5 HOH A 2 402 14 HOH HOH . VA 5 HOH A 3 403 30 HOH HOH . VA 5 HOH A 4 404 18 HOH HOH . VA 5 HOH A 5 405 36 HOH HOH . VA 5 HOH A 6 406 25 HOH HOH . VA 5 HOH A 7 407 16 HOH HOH . VA 5 HOH A 8 408 21 HOH HOH . VA 5 HOH A 9 409 32 HOH HOH . VA 5 HOH A 10 410 64 HOH HOH . VA 5 HOH A 11 411 5 HOH HOH . VA 5 HOH A 12 412 19 HOH HOH . VA 5 HOH A 13 413 51 HOH HOH . VA 5 HOH A 14 414 7 HOH HOH . VA 5 HOH A 15 415 6 HOH HOH . VA 5 HOH A 16 416 65 HOH HOH . VA 5 HOH A 17 417 70 HOH HOH . VA 5 HOH A 18 418 12 HOH HOH . VA 5 HOH A 19 419 1 HOH HOH . VA 5 HOH A 20 420 15 HOH HOH . VA 5 HOH A 21 421 62 HOH HOH . VA 5 HOH A 22 422 52 HOH HOH . VA 5 HOH A 23 423 59 HOH HOH . VA 5 HOH A 24 424 53 HOH HOH . VA 5 HOH A 25 425 26 HOH HOH . VA 5 HOH A 26 426 48 HOH HOH . VA 5 HOH A 27 427 76 HOH HOH . VA 5 HOH A 28 428 54 HOH HOH . VA 5 HOH A 29 429 47 HOH HOH . VA 5 HOH A 30 430 66 HOH HOH . VA 5 HOH A 31 431 68 HOH HOH . VA 5 HOH A 32 432 45 HOH HOH . VA 5 HOH A 33 433 42 HOH HOH . VA 5 HOH A 34 434 38 HOH HOH . VA 5 HOH A 35 435 57 HOH HOH . VA 5 HOH A 36 436 77 HOH HOH . VA 5 HOH A 37 437 46 HOH HOH . VA 5 HOH A 38 438 44 HOH HOH . WA 5 HOH B 1 401 39 HOH HOH . WA 5 HOH B 2 402 41 HOH HOH . WA 5 HOH B 3 403 40 HOH HOH . WA 5 HOH B 4 404 17 HOH HOH . WA 5 HOH B 5 405 9 HOH HOH . WA 5 HOH B 6 406 31 HOH HOH . WA 5 HOH B 7 407 27 HOH HOH . WA 5 HOH B 8 408 75 HOH HOH . WA 5 HOH B 9 409 24 HOH HOH . WA 5 HOH B 10 410 22 HOH HOH . WA 5 HOH B 11 411 20 HOH HOH . WA 5 HOH B 12 412 23 HOH HOH . WA 5 HOH B 13 413 4 HOH HOH . WA 5 HOH B 14 414 58 HOH HOH . WA 5 HOH B 15 415 28 HOH HOH . WA 5 HOH B 16 416 10 HOH HOH . WA 5 HOH B 17 417 3 HOH HOH . WA 5 HOH B 18 418 11 HOH HOH . WA 5 HOH B 19 419 13 HOH HOH . WA 5 HOH B 20 420 61 HOH HOH . WA 5 HOH B 21 421 74 HOH HOH . WA 5 HOH B 22 422 60 HOH HOH . WA 5 HOH B 23 423 2 HOH HOH . WA 5 HOH B 24 424 78 HOH HOH . WA 5 HOH B 25 425 33 HOH HOH . WA 5 HOH B 26 426 29 HOH HOH . WA 5 HOH B 27 427 49 HOH HOH . WA 5 HOH B 28 428 63 HOH HOH . WA 5 HOH B 29 429 69 HOH HOH . WA 5 HOH B 30 430 71 HOH HOH . WA 5 HOH B 31 431 72 HOH HOH . WA 5 HOH B 32 432 67 HOH HOH . WA 5 HOH B 33 433 43 HOH HOH . WA 5 HOH B 34 434 55 HOH HOH . WA 5 HOH B 35 435 56 HOH HOH . WA 5 HOH B 36 436 35 HOH HOH . WA 5 HOH B 37 437 34 HOH HOH . WA 5 HOH B 38 438 37 HOH HOH . WA 5 HOH B 39 439 73 HOH HOH . WA 5 HOH B 40 440 50 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C9 OLC . . . X 4 20.221 13.576 4.529 1 49.76 ? C9 OLC 322 A 1 HETATM 2 C C8 OLC . . . X 4 19.232 13.794 5.636 1 48.83 ? C8 OLC 322 A 1 HETATM 3 C C24 OLC . . . X 4 12.59 14.249 15.517 1 72.88 ? C24 OLC 322 A 1 HETATM 4 C C7 OLC . . . X 4 19.75 14.93 6.506 1 48.97 ? C7 OLC 322 A 1 HETATM 5 C C6 OLC . . . X 4 19.086 15.061 7.875 1 45.37 ? C6 OLC 322 A 1 HETATM 6 C C5 OLC . . . X 4 18.199 16.306 7.971 1 44.6 ? C5 OLC 322 A 1 HETATM 7 C C4 OLC . . . X 4 16.858 16.026 8.632 1 44.26 ? C4 OLC 322 A 1 HETATM 8 C C3 OLC . . . X 4 17.02 15.625 10.07 1 46.27 ? C3 OLC 322 A 1 HETATM 9 C C2 OLC . . . X 4 15.996 16.175 11.038 1 49.45 ? C2 OLC 322 A 1 HETATM 10 C C21 OLC . . . X 4 14.359 14.063 13.781 1 65.47 ? C21 OLC 322 A 1 HETATM 11 C C1 OLC . . . X 4 15.378 15.051 11.785 1 55.97 ? C1 OLC 322 A 1 HETATM 12 C C22 OLC . . . X 4 14.087 14.339 15.253 1 69.59 ? C22 OLC 322 A 1 HETATM 13 O O19 OLC . . . X 4 14.886 14.147 11.138 1 76.69 ? O19 OLC 322 A 1 HETATM 14 O O25 OLC . . . X 4 11.93 15.434 15.062 1 69.53 ? O25 OLC 322 A 1 HETATM 15 O O23 OLC . . . X 4 14.765 13.354 16.049 1 79.47 ? O23 OLC 322 A 1 HETATM 16 O O20 OLC . . . X 4 15.316 14.968 13.229 1 58.48 ? O20 OLC 322 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 262 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 16 #