data_5JSL # _model_server_result.job_id MPQR4KXzvf6BAOtM7tsidg _model_server_result.datetime_utc '2024-11-15 09:36:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5jsl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":202}' # _entry.id 5JSL # _exptl.entry_id 5JSL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 176.124 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ASCORBIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5JSL _cell.length_a 53.273 _cell.length_b 53.273 _cell.length_c 180.871 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5JSL _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 10_665 -y+1,-x+1,-z+1/6 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 26.6365 46.135771 30.145167 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C PCA 1 A PCA 1 1_555 A N PHE 2 A PHE 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale2 A SG CYS 116 A CYS 116 1_555 B CAB HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.93 ? covale ? covale3 A SG CYS 119 A CYS 119 1_555 B CAC HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.951 ? metalc ? metalc1 A NE2 HIS 120 A HIS 120 1_555 B FE HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.108 ? # _chem_comp.formula 'C6 H8 O6' _chem_comp.formula_weight 176.124 _chem_comp.id ASC _chem_comp.mon_nstd_flag . _chem_comp.name 'ASCORBIC ACID' _chem_comp.type l-saccharide _chem_comp.pdbx_synonyms 'Vitamin C' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 ASC sing 39 n n C1 O1 ASC doub 40 n n C1 O4 ASC sing 41 n n C2 C3 ASC doub 42 n n C2 O2 ASC sing 43 n n C3 C4 ASC sing 44 n n C3 O3 ASC sing 45 n n C4 C5 ASC sing 46 n n C4 O4 ASC sing 47 n n C4 H4 ASC sing 48 n n C5 C6 ASC sing 49 n n C5 O5 ASC sing 50 n n C5 H5 ASC sing 51 n n C6 O6 ASC sing 52 n n C6 H61 ASC sing 53 n n C6 H62 ASC sing 54 n n O2 HO2 ASC sing 55 n n O3 HO3 ASC sing 56 n n O5 HO5 ASC sing 57 n n O6 HO6 ASC sing 58 n n # _atom_sites.entry_id 5JSL _atom_sites.fract_transf_matrix[1][1] 0.018771 _atom_sites.fract_transf_matrix[1][2] 0.010838 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021675 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005529 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEC A 1 201 128 HEC HEC . C 3 ASC A 1 202 130 ASC ASC . D 4 SO4 A 1 203 2001 SO4 SUL . E 4 SO4 A 1 204 2002 SO4 SUL . F 4 SO4 A 1 205 2003 SO4 SUL . G 5 HOH A 1 301 200 HOH HOH . G 5 HOH A 2 302 175 HOH HOH . G 5 HOH A 3 303 71 HOH HOH . G 5 HOH A 4 304 80 HOH HOH . G 5 HOH A 5 305 214 HOH HOH . G 5 HOH A 6 306 196 HOH HOH . G 5 HOH A 7 307 74 HOH HOH . G 5 HOH A 8 308 91 HOH HOH . G 5 HOH A 9 309 54 HOH HOH . G 5 HOH A 10 310 53 HOH HOH . G 5 HOH A 11 311 90 HOH HOH . G 5 HOH A 12 312 212 HOH HOH . G 5 HOH A 13 313 49 HOH HOH . G 5 HOH A 14 314 127 HOH HOH . G 5 HOH A 15 315 113 HOH HOH . G 5 HOH A 16 316 58 HOH HOH . G 5 HOH A 17 317 88 HOH HOH . G 5 HOH A 18 318 59 HOH HOH . G 5 HOH A 19 319 190 HOH HOH . G 5 HOH A 20 320 168 HOH HOH . G 5 HOH A 21 321 222 HOH HOH . G 5 HOH A 22 322 37 HOH HOH . G 5 HOH A 23 323 65 HOH HOH . G 5 HOH A 24 324 56 HOH HOH . G 5 HOH A 25 325 20 HOH HOH . G 5 HOH A 26 326 17 HOH HOH . G 5 HOH A 27 327 111 HOH HOH . G 5 HOH A 28 328 72 HOH HOH . G 5 HOH A 29 329 48 HOH HOH . G 5 HOH A 30 330 52 HOH HOH . G 5 HOH A 31 331 128 HOH HOH . G 5 HOH A 32 332 157 HOH HOH . G 5 HOH A 33 333 93 HOH HOH . G 5 HOH A 34 334 86 HOH HOH . G 5 HOH A 35 335 184 HOH HOH . G 5 HOH A 36 336 195 HOH HOH . G 5 HOH A 37 337 18 HOH HOH . G 5 HOH A 38 338 8 HOH HOH . G 5 HOH A 39 339 46 HOH HOH . G 5 HOH A 40 340 9 HOH HOH . G 5 HOH A 41 341 7 HOH HOH . G 5 HOH A 42 342 25 HOH HOH . G 5 HOH A 43 343 239 HOH HOH . G 5 HOH A 44 344 201 HOH HOH . G 5 HOH A 45 345 135 HOH HOH . G 5 HOH A 46 346 101 HOH HOH . G 5 HOH A 47 347 1 HOH HOH . G 5 HOH A 48 348 183 HOH HOH . G 5 HOH A 49 349 75 HOH HOH . G 5 HOH A 50 350 3 HOH HOH . G 5 HOH A 51 351 28 HOH HOH . G 5 HOH A 52 352 6 HOH HOH . G 5 HOH A 53 353 224 HOH HOH . G 5 HOH A 54 354 107 HOH HOH . G 5 HOH A 55 355 38 HOH HOH . G 5 HOH A 56 356 41 HOH HOH . G 5 HOH A 57 357 24 HOH HOH . G 5 HOH A 58 358 172 HOH HOH . G 5 HOH A 59 359 44 HOH HOH . G 5 HOH A 60 360 34 HOH HOH . G 5 HOH A 61 361 45 HOH HOH . G 5 HOH A 62 362 121 HOH HOH . G 5 HOH A 63 363 2 HOH HOH . G 5 HOH A 64 364 19 HOH HOH . G 5 HOH A 65 365 4 HOH HOH . G 5 HOH A 66 366 202 HOH HOH . G 5 HOH A 67 367 179 HOH HOH . G 5 HOH A 68 368 136 HOH HOH . G 5 HOH A 69 369 162 HOH HOH . G 5 HOH A 70 370 5 HOH HOH . G 5 HOH A 71 371 77 HOH HOH . G 5 HOH A 72 372 26 HOH HOH . G 5 HOH A 73 373 169 HOH HOH . G 5 HOH A 74 374 62 HOH HOH . G 5 HOH A 75 375 55 HOH HOH . G 5 HOH A 76 376 61 HOH HOH . G 5 HOH A 77 377 35 HOH HOH . G 5 HOH A 78 378 43 HOH HOH . G 5 HOH A 79 379 50 HOH HOH . G 5 HOH A 80 380 14 HOH HOH . G 5 HOH A 81 381 68 HOH HOH . G 5 HOH A 82 382 30 HOH HOH . G 5 HOH A 83 383 150 HOH HOH . G 5 HOH A 84 384 106 HOH HOH . G 5 HOH A 85 385 177 HOH HOH . G 5 HOH A 86 386 153 HOH HOH . G 5 HOH A 87 387 145 HOH HOH . G 5 HOH A 88 388 85 HOH HOH . G 5 HOH A 89 389 13 HOH HOH . G 5 HOH A 90 390 40 HOH HOH . G 5 HOH A 91 391 180 HOH HOH . G 5 HOH A 92 392 16 HOH HOH . G 5 HOH A 93 393 10 HOH HOH . G 5 HOH A 94 394 31 HOH HOH . G 5 HOH A 95 395 47 HOH HOH . G 5 HOH A 96 396 176 HOH HOH . G 5 HOH A 97 397 15 HOH HOH . G 5 HOH A 98 398 42 HOH HOH . G 5 HOH A 99 399 83 HOH HOH . G 5 HOH A 100 400 133 HOH HOH . G 5 HOH A 101 401 254 HOH HOH . G 5 HOH A 102 402 23 HOH HOH . G 5 HOH A 103 403 161 HOH HOH . G 5 HOH A 104 404 205 HOH HOH . G 5 HOH A 105 405 22 HOH HOH . G 5 HOH A 106 406 33 HOH HOH . G 5 HOH A 107 407 112 HOH HOH . G 5 HOH A 108 408 60 HOH HOH . G 5 HOH A 109 409 12 HOH HOH . G 5 HOH A 110 410 66 HOH HOH . G 5 HOH A 111 411 149 HOH HOH . G 5 HOH A 112 412 247 HOH HOH . G 5 HOH A 113 413 152 HOH HOH . G 5 HOH A 114 414 223 HOH HOH . G 5 HOH A 115 415 137 HOH HOH . G 5 HOH A 116 416 207 HOH HOH . G 5 HOH A 117 417 79 HOH HOH . G 5 HOH A 118 418 131 HOH HOH . G 5 HOH A 119 419 193 HOH HOH . G 5 HOH A 120 420 11 HOH HOH . G 5 HOH A 121 421 151 HOH HOH . G 5 HOH A 122 422 36 HOH HOH . G 5 HOH A 123 423 132 HOH HOH . G 5 HOH A 124 424 154 HOH HOH . G 5 HOH A 125 425 206 HOH HOH . G 5 HOH A 126 426 141 HOH HOH . G 5 HOH A 127 427 51 HOH HOH . G 5 HOH A 128 428 81 HOH HOH . G 5 HOH A 129 429 108 HOH HOH . G 5 HOH A 130 430 84 HOH HOH . G 5 HOH A 131 431 123 HOH HOH . G 5 HOH A 132 432 211 HOH HOH . G 5 HOH A 133 433 144 HOH HOH . G 5 HOH A 134 434 181 HOH HOH . G 5 HOH A 135 435 209 HOH HOH . G 5 HOH A 136 436 27 HOH HOH . G 5 HOH A 137 437 143 HOH HOH . G 5 HOH A 138 438 158 HOH HOH . G 5 HOH A 139 439 96 HOH HOH . G 5 HOH A 140 440 164 HOH HOH . G 5 HOH A 141 441 32 HOH HOH . G 5 HOH A 142 442 173 HOH HOH . G 5 HOH A 143 443 21 HOH HOH . G 5 HOH A 144 444 217 HOH HOH . G 5 HOH A 145 445 147 HOH HOH . G 5 HOH A 146 446 119 HOH HOH . G 5 HOH A 147 447 102 HOH HOH . G 5 HOH A 148 448 122 HOH HOH . G 5 HOH A 149 449 94 HOH HOH . G 5 HOH A 150 450 186 HOH HOH . G 5 HOH A 151 451 98 HOH HOH . G 5 HOH A 152 452 57 HOH HOH . G 5 HOH A 153 453 188 HOH HOH . G 5 HOH A 154 454 87 HOH HOH . G 5 HOH A 155 455 204 HOH HOH . G 5 HOH A 156 456 171 HOH HOH . G 5 HOH A 157 457 140 HOH HOH . G 5 HOH A 158 458 95 HOH HOH . G 5 HOH A 159 459 220 HOH HOH . G 5 HOH A 160 460 73 HOH HOH . G 5 HOH A 161 461 70 HOH HOH . G 5 HOH A 162 462 139 HOH HOH . G 5 HOH A 163 463 39 HOH HOH . G 5 HOH A 164 464 67 HOH HOH . G 5 HOH A 165 465 78 HOH HOH . G 5 HOH A 166 466 89 HOH HOH . G 5 HOH A 167 467 103 HOH HOH . G 5 HOH A 168 468 210 HOH HOH . G 5 HOH A 169 469 146 HOH HOH . G 5 HOH A 170 470 208 HOH HOH . G 5 HOH A 171 471 134 HOH HOH . G 5 HOH A 172 472 118 HOH HOH . G 5 HOH A 173 473 182 HOH HOH . G 5 HOH A 174 474 116 HOH HOH . G 5 HOH A 175 475 109 HOH HOH . G 5 HOH A 176 476 110 HOH HOH . G 5 HOH A 177 477 187 HOH HOH . G 5 HOH A 178 478 76 HOH HOH . G 5 HOH A 179 479 69 HOH HOH . G 5 HOH A 180 480 194 HOH HOH . G 5 HOH A 181 481 216 HOH HOH . G 5 HOH A 182 482 63 HOH HOH . G 5 HOH A 183 483 97 HOH HOH . G 5 HOH A 184 484 198 HOH HOH . G 5 HOH A 185 485 64 HOH HOH . G 5 HOH A 186 486 160 HOH HOH . G 5 HOH A 187 487 29 HOH HOH . G 5 HOH A 188 488 100 HOH HOH . G 5 HOH A 189 489 170 HOH HOH . G 5 HOH A 190 490 129 HOH HOH . G 5 HOH A 191 491 189 HOH HOH . G 5 HOH A 192 492 104 HOH HOH . G 5 HOH A 193 493 82 HOH HOH . G 5 HOH A 194 494 138 HOH HOH . G 5 HOH A 195 495 167 HOH HOH . G 5 HOH A 196 496 99 HOH HOH . G 5 HOH A 197 497 233 HOH HOH . G 5 HOH A 198 498 148 HOH HOH . G 5 HOH A 199 499 92 HOH HOH . G 5 HOH A 200 500 114 HOH HOH . G 5 HOH A 201 501 221 HOH HOH . G 5 HOH A 202 502 117 HOH HOH . G 5 HOH A 203 503 105 HOH HOH . G 5 HOH A 204 504 115 HOH HOH . G 5 HOH A 205 505 225 HOH HOH . G 5 HOH A 206 506 124 HOH HOH . G 5 HOH A 207 507 120 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 ASC . . . C 3 7.917 42.926 15.069 1 23.24 ? C1 ASC 202 A 1 HETATM 2 C C2 ASC . . . C 3 8.478 41.842 15.854 1 27.76 ? C2 ASC 202 A 1 HETATM 3 C C3 ASC . . . C 3 8.724 42.311 17.085 1 24.95 ? C3 ASC 202 A 1 HETATM 4 C C4 ASC . . . C 3 8.274 43.734 17.182 1 26.85 ? C4 ASC 202 A 1 HETATM 5 C C5 ASC . . . C 3 9.378 44.716 17.565 1 33.46 ? C5 ASC 202 A 1 HETATM 6 C C6 ASC . . . C 3 8.854 46.15 17.492 1 38.82 ? C6 ASC 202 A 1 HETATM 7 O O1 ASC . . . C 3 7.53 42.937 13.901 1 26.82 ? O1 ASC 202 A 1 HETATM 8 O O2 ASC . . . C 3 8.72 40.625 15.362 1 23.64 ? O2 ASC 202 A 1 HETATM 9 O O3 ASC . . . C 3 9.29 41.745 18.141 1 25.62 ? O3 ASC 202 A 1 HETATM 10 O O4 ASC . . . C 3 7.839 44.05 15.833 1 23.86 ? O4 ASC 202 A 1 HETATM 11 O O5 ASC . . . C 3 10.47 44.554 16.643 1 31.2 ? O5 ASC 202 A 1 HETATM 12 O O6 ASC . . . C 3 9.984 47.014 17.67 1 30.86 ? O6 ASC 202 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 255 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 12 #