data_5JT2
#
_model_server_result.job_id            T1oJfUaN8KAKwiDyBaHOwg 
_model_server_result.datetime_utc      '2024-11-22 22:35:08' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5jt2 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":801}' 
#
_entry.id    5JT2 
#
_exptl.entry_id    5JT2 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              120.152 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            BENZAMIDINE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5JT2 
_cell.length_a            65.102 
_cell.length_b            68.442 
_cell.length_c            275.603 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5JT2 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? dimeric 2 author_defined_assembly 1 
? dimeric 2 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,G,I,J 1 1 
C,D,H,K,L 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 G N N 
#
_chem_comp.formula           'C7 H8 N2' 
_chem_comp.formula_weight    120.152 
_chem_comp.id                BEN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              BENZAMIDINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 BEN doub 198 n y 
C1 C6 BEN sing 199 n y 
C1 C BEN sing 200 n n 
C2 C3 BEN sing 201 n y 
C2 H2 BEN sing 202 n n 
C3 C4 BEN doub 203 n y 
C3 H3 BEN sing 204 n n 
C4 C5 BEN sing 205 n y 
C4 H4 BEN sing 206 n n 
C5 C6 BEN doub 207 n y 
C5 H5 BEN sing 208 n n 
C6 H6 BEN sing 209 n n 
C N1 BEN doub 210 e n 
C N2 BEN sing 211 n n 
N1 HN1 BEN sing 212 n n 
N2 HN21 BEN sing 213 n n 
N2 HN22 BEN sing 214 n n 
#
_atom_sites.entry_id                     5JT2 
_atom_sites.fract_transf_matrix[1][1]    0.015361 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014611 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003628 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 BEN A 1 801 720 BEN BEN . 
F 3 6NC A 1 802 720 6NC LIG . 
G 2 BEN B 1 801 720 BEN BEN . 
H 3 6NC C 1 801 719 6NC LIG . 
I 4 HOH A 1 901 730 HOH HOH . 
I 4 HOH A 2 902 751 HOH HOH . 
I 4 HOH A 3 903 733 HOH HOH . 
I 4 HOH A 4 904 762 HOH HOH . 
I 4 HOH A 5 905 748 HOH HOH . 
I 4 HOH A 6 906 767 HOH HOH . 
I 4 HOH A 7 907 739 HOH HOH . 
I 4 HOH A 8 908 755 HOH HOH . 
I 4 HOH A 9 909 731 HOH HOH . 
I 4 HOH A 10 910 753 HOH HOH . 
I 4 HOH A 11 911 750 HOH HOH . 
I 4 HOH A 12 912 746 HOH HOH . 
I 4 HOH A 13 913 745 HOH HOH . 
I 4 HOH A 14 914 760 HOH HOH . 
I 4 HOH A 15 915 729 HOH HOH . 
I 4 HOH A 16 916 732 HOH HOH . 
I 4 HOH A 17 917 742 HOH HOH . 
I 4 HOH A 18 918 763 HOH HOH . 
I 4 HOH A 19 919 747 HOH HOH . 
I 4 HOH A 20 920 757 HOH HOH . 
I 4 HOH A 21 921 765 HOH HOH . 
I 4 HOH A 22 922 723 HOH HOH . 
I 4 HOH A 23 923 756 HOH HOH . 
I 4 HOH A 24 924 724 HOH HOH . 
I 4 HOH A 25 925 726 HOH HOH . 
I 4 HOH A 26 926 759 HOH HOH . 
I 4 HOH A 27 927 749 HOH HOH . 
I 4 HOH A 28 928 743 HOH HOH . 
I 4 HOH A 29 929 725 HOH HOH . 
I 4 HOH A 30 930 727 HOH HOH . 
I 4 HOH A 31 931 735 HOH HOH . 
I 4 HOH A 32 932 721 HOH HOH . 
I 4 HOH A 33 933 764 HOH HOH . 
I 4 HOH A 34 934 761 HOH HOH . 
I 4 HOH A 35 935 752 HOH HOH . 
I 4 HOH A 36 936 734 HOH HOH . 
I 4 HOH A 37 937 753 HOH HOH . 
I 4 HOH A 38 938 737 HOH HOH . 
I 4 HOH A 39 939 736 HOH HOH . 
I 4 HOH A 40 940 738 HOH HOH . 
I 4 HOH A 41 941 750 HOH HOH . 
I 4 HOH A 42 942 728 HOH HOH . 
I 4 HOH A 43 943 722 HOH HOH . 
I 4 HOH A 44 944 740 HOH HOH . 
I 4 HOH A 45 945 758 HOH HOH . 
I 4 HOH A 46 946 754 HOH HOH . 
I 4 HOH A 47 947 744 HOH HOH . 
I 4 HOH A 48 948 738 HOH HOH . 
I 4 HOH A 49 949 766 HOH HOH . 
J 4 HOH B 1 901 741 HOH HOH . 
J 4 HOH B 2 902 732 HOH HOH . 
J 4 HOH B 3 903 730 HOH HOH . 
J 4 HOH B 4 904 733 HOH HOH . 
J 4 HOH B 5 905 739 HOH HOH . 
J 4 HOH B 6 906 734 HOH HOH . 
J 4 HOH B 7 907 741 HOH HOH . 
J 4 HOH B 8 908 731 HOH HOH . 
J 4 HOH B 9 909 762 HOH HOH . 
J 4 HOH B 10 910 722 HOH HOH . 
J 4 HOH B 11 911 777 HOH HOH . 
J 4 HOH B 12 912 770 HOH HOH . 
J 4 HOH B 13 913 736 HOH HOH . 
J 4 HOH B 14 914 743 HOH HOH . 
J 4 HOH B 15 915 779 HOH HOH . 
J 4 HOH B 16 916 723 HOH HOH . 
J 4 HOH B 17 917 742 HOH HOH . 
J 4 HOH B 18 918 760 HOH HOH . 
J 4 HOH B 19 919 776 HOH HOH . 
J 4 HOH B 20 920 755 HOH HOH . 
J 4 HOH B 21 921 724 HOH HOH . 
J 4 HOH B 22 922 721 HOH HOH . 
J 4 HOH B 23 923 751 HOH HOH . 
J 4 HOH B 24 924 763 HOH HOH . 
J 4 HOH B 25 925 725 HOH HOH . 
J 4 HOH B 26 926 774 HOH HOH . 
J 4 HOH B 27 927 754 HOH HOH . 
J 4 HOH B 28 928 746 HOH HOH . 
J 4 HOH B 29 929 773 HOH HOH . 
J 4 HOH B 30 930 771 HOH HOH . 
J 4 HOH B 31 931 780 HOH HOH . 
J 4 HOH B 32 932 778 HOH HOH . 
J 4 HOH B 33 933 735 HOH HOH . 
J 4 HOH B 34 934 765 HOH HOH . 
J 4 HOH B 35 935 758 HOH HOH . 
J 4 HOH B 36 936 757 HOH HOH . 
J 4 HOH B 37 937 752 HOH HOH . 
J 4 HOH B 38 938 769 HOH HOH . 
J 4 HOH B 39 939 727 HOH HOH . 
J 4 HOH B 40 940 756 HOH HOH . 
J 4 HOH B 41 941 738 HOH HOH . 
J 4 HOH B 42 942 750 HOH HOH . 
J 4 HOH B 43 943 729 HOH HOH . 
J 4 HOH B 44 944 745 HOH HOH . 
J 4 HOH B 45 945 732 HOH HOH . 
J 4 HOH B 46 946 766 HOH HOH . 
J 4 HOH B 47 947 737 HOH HOH . 
J 4 HOH B 48 948 764 HOH HOH . 
J 4 HOH B 49 949 747 HOH HOH . 
J 4 HOH B 50 950 748 HOH HOH . 
J 4 HOH B 51 951 728 HOH HOH . 
J 4 HOH B 52 952 775 HOH HOH . 
J 4 HOH B 53 953 772 HOH HOH . 
J 4 HOH B 54 954 740 HOH HOH . 
J 4 HOH B 55 955 768 HOH HOH . 
J 4 HOH B 56 956 767 HOH HOH . 
J 4 HOH B 57 957 726 HOH HOH . 
J 4 HOH B 58 958 749 HOH HOH . 
J 4 HOH B 59 959 744 HOH HOH . 
J 4 HOH B 60 960 761 HOH HOH . 
J 4 HOH B 61 961 759 HOH HOH . 
J 4 HOH B 62 962 190 HOH HOH . 
J 4 HOH B 63 963 169 HOH HOH . 
K 4 HOH C 1 901 739 HOH HOH . 
K 4 HOH C 2 902 740 HOH HOH . 
K 4 HOH C 3 903 737 HOH HOH . 
K 4 HOH C 4 904 742 HOH HOH . 
K 4 HOH C 5 905 724 HOH HOH . 
K 4 HOH C 6 906 734 HOH HOH . 
K 4 HOH C 7 907 736 HOH HOH . 
K 4 HOH C 8 908 721 HOH HOH . 
K 4 HOH C 9 909 725 HOH HOH . 
K 4 HOH C 10 910 727 HOH HOH . 
K 4 HOH C 11 911 733 HOH HOH . 
K 4 HOH C 12 912 731 HOH HOH . 
K 4 HOH C 13 913 743 HOH HOH . 
K 4 HOH C 14 914 747 HOH HOH . 
K 4 HOH C 15 915 741 HOH HOH . 
K 4 HOH C 16 916 726 HOH HOH . 
K 4 HOH C 17 917 728 HOH HOH . 
K 4 HOH C 18 918 729 HOH HOH . 
K 4 HOH C 19 919 722 HOH HOH . 
K 4 HOH C 20 920 735 HOH HOH . 
K 4 HOH C 21 921 723 HOH HOH . 
K 4 HOH C 22 922 745 HOH HOH . 
K 4 HOH C 23 923 738 HOH HOH . 
K 4 HOH C 24 924 744 HOH HOH . 
K 4 HOH C 25 925 746 HOH HOH . 
K 4 HOH C 26 926 730 HOH HOH . 
L 4 HOH D 1 801 733 HOH HOH . 
L 4 HOH D 2 802 756 HOH HOH . 
L 4 HOH D 3 803 751 HOH HOH . 
L 4 HOH D 4 804 736 HOH HOH . 
L 4 HOH D 5 805 729 HOH HOH . 
L 4 HOH D 6 806 727 HOH HOH . 
L 4 HOH D 7 807 722 HOH HOH . 
L 4 HOH D 8 808 737 HOH HOH . 
L 4 HOH D 9 809 720 HOH HOH . 
L 4 HOH D 10 810 752 HOH HOH . 
L 4 HOH D 11 811 754 HOH HOH . 
L 4 HOH D 12 812 730 HOH HOH . 
L 4 HOH D 13 813 753 HOH HOH . 
L 4 HOH D 14 814 744 HOH HOH . 
L 4 HOH D 15 815 745 HOH HOH . 
L 4 HOH D 16 816 721 HOH HOH . 
L 4 HOH D 17 817 725 HOH HOH . 
L 4 HOH D 18 818 723 HOH HOH . 
L 4 HOH D 19 819 740 HOH HOH . 
L 4 HOH D 20 820 755 HOH HOH . 
L 4 HOH D 21 821 746 HOH HOH . 
L 4 HOH D 22 822 731 HOH HOH . 
L 4 HOH D 23 823 748 HOH HOH . 
L 4 HOH D 24 824 732 HOH HOH . 
L 4 HOH D 25 825 724 HOH HOH . 
L 4 HOH D 26 826 739 HOH HOH . 
L 4 HOH D 27 827 743 HOH HOH . 
L 4 HOH D 28 828 757 HOH HOH . 
L 4 HOH D 29 829 728 HOH HOH . 
L 4 HOH D 30 830 735 HOH HOH . 
L 4 HOH D 31 831 742 HOH HOH . 
L 4 HOH D 32 832 747 HOH HOH . 
L 4 HOH D 33 833 749 HOH HOH . 
L 4 HOH D 34 834 726 HOH HOH . 
L 4 HOH D 35 835 741 HOH HOH . 
L 4 HOH D 36 836 734 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 BEN . . . G 2 -19.891 -22.535 -33.144 1 22.04 ? C1 BEN 801 B 1 
HETATM 2 C C2 BEN . . . G 2 -20.394 -22.13 -32.001 1 23.68 ? C2 BEN 801 B 1 
HETATM 3 C C3 BEN . . . G 2 -21.913 -22.096 -31.816 1 22.64 ? C3 BEN 801 B 1 
HETATM 4 C C4 BEN . . . G 2 -22.703 -22.46 -32.789 1 21.72 ? C4 BEN 801 B 1 
HETATM 5 C C5 BEN . . . G 2 -22.109 -22.946 -34.108 1 24.67 ? C5 BEN 801 B 1 
HETATM 6 C C6 BEN . . . G 2 -20.801 -22.981 -34.264 1 24.27 ? C6 BEN 801 B 1 
HETATM 7 C C BEN . . . G 2 -18.369 -22.594 -33.358 1 25.82 ? C BEN 801 B 1 
HETATM 8 N N1 BEN . . . G 2 -17.885 -22.297 -34.519 1 30.63 ? N1 BEN 801 B 1 
HETATM 9 N N2 BEN . . . G 2 -17.609 -22.945 -32.425 1 24.7 ? N2 BEN 801 B 1 
HETATM 10 H H2 BEN . . . G 2 -19.832 -21.862 -31.31 1 28.41 ? H2 BEN 801 B 1 
HETATM 11 H H3 BEN . . . G 2 -22.275 -21.799 -31.012 1 27.17 ? H3 BEN 801 B 1 
HETATM 12 H H4 BEN . . . G 2 -23.625 -22.441 -32.672 1 26.06 ? H4 BEN 801 B 1 
HETATM 13 H H5 BEN . . . G 2 -22.669 -23.213 -34.802 1 29.61 ? H5 BEN 801 B 1 
HETATM 14 H H6 BEN . . . G 2 -20.438 -23.269 -35.07 1 29.12 ? H6 BEN 801 B 1 
HETATM 15 H HN1 BEN . . . G 2 -17.036 -22.327 -34.652 1 36.76 ? HN1 BEN 801 B 1 
HETATM 16 H HN21 BEN . . . G 2 -17.943 -23.152 -31.627 1 29.64 ? HN21 BEN 801 B 1 
HETATM 17 H HN22 BEN . . . G 2 -18.409 -22.06 -35.158 1 36.76 ? HN22 BEN 801 B 1 
#
_model_server_stats.io_time_ms              46 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           280 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           17 
#