data_5JT4 # _model_server_result.job_id 8QsVYtKWJTSniCFbmT36Ag _model_server_result.datetime_utc '2024-11-15 08:45:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5jt4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":202}' # _entry.id 5JT4 # _exptl.entry_id 5JT4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 176.124 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ASCORBIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5JT4 _cell.length_a 53.532 _cell.length_b 53.532 _cell.length_c 180.938 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5JT4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 10_665 -y+1,-x+1,-z+1/6 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 26.766 46.360072 30.156333 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C PCA 1 A PCA 1 1_555 A N PHE 2 A PHE 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.351 ? covale ? covale2 A SG CYS 116 A CYS 116 1_555 B CAB HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.931 ? covale ? covale3 A SG CYS 119 A CYS 119 1_555 B CAC HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.951 ? metalc ? metalc1 A NE2 HIS 120 A HIS 120 1_555 B FE HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? metalc ? metalc2 B FE HEC . A HEC 201 1_555 E O HOH . A HOH 375 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.175 ? # _chem_comp.formula 'C6 H8 O6' _chem_comp.formula_weight 176.124 _chem_comp.id ASC _chem_comp.mon_nstd_flag . _chem_comp.name 'ASCORBIC ACID' _chem_comp.type l-saccharide _chem_comp.pdbx_synonyms 'Vitamin C' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 ASC sing 39 n n C1 O1 ASC doub 40 n n C1 O4 ASC sing 41 n n C2 C3 ASC doub 42 n n C2 O2 ASC sing 43 n n C3 C4 ASC sing 44 n n C3 O3 ASC sing 45 n n C4 C5 ASC sing 46 n n C4 O4 ASC sing 47 n n C4 H4 ASC sing 48 n n C5 C6 ASC sing 49 n n C5 O5 ASC sing 50 n n C5 H5 ASC sing 51 n n C6 O6 ASC sing 52 n n C6 H61 ASC sing 53 n n C6 H62 ASC sing 54 n n O2 HO2 ASC sing 55 n n O3 HO3 ASC sing 56 n n O5 HO5 ASC sing 57 n n O6 HO6 ASC sing 58 n n # _atom_sites.entry_id 5JT4 _atom_sites.fract_transf_matrix[1][1] 0.01868 _atom_sites.fract_transf_matrix[1][2] 0.010785 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.02157 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005527 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEC A 1 201 128 HEC HEC . C 3 ASC A 1 202 130 ASC ASC . D 4 SO4 A 1 203 2001 SO4 SUL . E 5 HOH A 1 301 95 HOH HOH . E 5 HOH A 2 302 211 HOH HOH . E 5 HOH A 3 303 191 HOH HOH . E 5 HOH A 4 304 134 HOH HOH . E 5 HOH A 5 305 129 HOH HOH . E 5 HOH A 6 306 130 HOH HOH . E 5 HOH A 7 307 221 HOH HOH . E 5 HOH A 8 308 146 HOH HOH . E 5 HOH A 9 309 24 HOH HOH . E 5 HOH A 10 310 228 HOH HOH . E 5 HOH A 11 311 199 HOH HOH . E 5 HOH A 12 312 47 HOH HOH . E 5 HOH A 13 313 81 HOH HOH . E 5 HOH A 14 314 1 HOH HOH . E 5 HOH A 15 315 77 HOH HOH . E 5 HOH A 16 316 90 HOH HOH . E 5 HOH A 17 317 254 HOH HOH . E 5 HOH A 18 318 126 HOH HOH . E 5 HOH A 19 319 17 HOH HOH . E 5 HOH A 20 320 48 HOH HOH . E 5 HOH A 21 321 27 HOH HOH . E 5 HOH A 22 322 69 HOH HOH . E 5 HOH A 23 323 105 HOH HOH . E 5 HOH A 24 324 99 HOH HOH . E 5 HOH A 25 325 50 HOH HOH . E 5 HOH A 26 326 79 HOH HOH . E 5 HOH A 27 327 101 HOH HOH . E 5 HOH A 28 328 64 HOH HOH . E 5 HOH A 29 329 35 HOH HOH . E 5 HOH A 30 330 14 HOH HOH . E 5 HOH A 31 331 32 HOH HOH . E 5 HOH A 32 332 38 HOH HOH . E 5 HOH A 33 333 198 HOH HOH . E 5 HOH A 34 334 66 HOH HOH . E 5 HOH A 35 335 23 HOH HOH . E 5 HOH A 36 336 20 HOH HOH . E 5 HOH A 37 337 31 HOH HOH . E 5 HOH A 38 338 6 HOH HOH . E 5 HOH A 39 339 41 HOH HOH . E 5 HOH A 40 340 53 HOH HOH . E 5 HOH A 41 341 55 HOH HOH . E 5 HOH A 42 342 67 HOH HOH . E 5 HOH A 43 343 136 HOH HOH . E 5 HOH A 44 344 8 HOH HOH . E 5 HOH A 45 345 60 HOH HOH . E 5 HOH A 46 346 185 HOH HOH . E 5 HOH A 47 347 93 HOH HOH . E 5 HOH A 48 348 15 HOH HOH . E 5 HOH A 49 349 46 HOH HOH . E 5 HOH A 50 350 213 HOH HOH . E 5 HOH A 51 351 37 HOH HOH . E 5 HOH A 52 352 34 HOH HOH . E 5 HOH A 53 353 91 HOH HOH . E 5 HOH A 54 354 5 HOH HOH . E 5 HOH A 55 355 68 HOH HOH . E 5 HOH A 56 356 63 HOH HOH . E 5 HOH A 57 357 39 HOH HOH . E 5 HOH A 58 358 36 HOH HOH . E 5 HOH A 59 359 12 HOH HOH . E 5 HOH A 60 360 167 HOH HOH . E 5 HOH A 61 361 140 HOH HOH . E 5 HOH A 62 362 22 HOH HOH . E 5 HOH A 63 363 11 HOH HOH . E 5 HOH A 64 364 89 HOH HOH . E 5 HOH A 65 365 30 HOH HOH . E 5 HOH A 66 366 107 HOH HOH . E 5 HOH A 67 367 56 HOH HOH . E 5 HOH A 68 368 144 HOH HOH . E 5 HOH A 69 369 65 HOH HOH . E 5 HOH A 70 370 45 HOH HOH . E 5 HOH A 71 371 110 HOH HOH . E 5 HOH A 72 372 143 HOH HOH . E 5 HOH A 73 373 154 HOH HOH . E 5 HOH A 74 374 135 HOH HOH . E 5 HOH A 75 375 2 HOH HOH . E 5 HOH A 76 376 177 HOH HOH . E 5 HOH A 77 377 10 HOH HOH . E 5 HOH A 78 378 161 HOH HOH . E 5 HOH A 79 379 98 HOH HOH . E 5 HOH A 80 380 40 HOH HOH . E 5 HOH A 81 381 25 HOH HOH . E 5 HOH A 82 382 26 HOH HOH . E 5 HOH A 83 383 54 HOH HOH . E 5 HOH A 84 384 52 HOH HOH . E 5 HOH A 85 385 94 HOH HOH . E 5 HOH A 86 386 44 HOH HOH . E 5 HOH A 87 387 9 HOH HOH . E 5 HOH A 88 388 49 HOH HOH . E 5 HOH A 89 389 169 HOH HOH . E 5 HOH A 90 390 16 HOH HOH . E 5 HOH A 91 391 145 HOH HOH . E 5 HOH A 92 392 13 HOH HOH . E 5 HOH A 93 393 7 HOH HOH . E 5 HOH A 94 394 61 HOH HOH . E 5 HOH A 95 395 186 HOH HOH . E 5 HOH A 96 396 108 HOH HOH . E 5 HOH A 97 397 18 HOH HOH . E 5 HOH A 98 398 28 HOH HOH . E 5 HOH A 99 399 248 HOH HOH . E 5 HOH A 100 400 100 HOH HOH . E 5 HOH A 101 401 33 HOH HOH . E 5 HOH A 102 402 133 HOH HOH . E 5 HOH A 103 403 106 HOH HOH . E 5 HOH A 104 404 21 HOH HOH . E 5 HOH A 105 405 223 HOH HOH . E 5 HOH A 106 406 195 HOH HOH . E 5 HOH A 107 407 59 HOH HOH . E 5 HOH A 108 408 19 HOH HOH . E 5 HOH A 109 409 4 HOH HOH . E 5 HOH A 110 410 73 HOH HOH . E 5 HOH A 111 411 42 HOH HOH . E 5 HOH A 112 412 76 HOH HOH . E 5 HOH A 113 413 158 HOH HOH . E 5 HOH A 114 414 3 HOH HOH . E 5 HOH A 115 415 165 HOH HOH . E 5 HOH A 116 416 92 HOH HOH . E 5 HOH A 117 417 234 HOH HOH . E 5 HOH A 118 418 116 HOH HOH . E 5 HOH A 119 419 208 HOH HOH . E 5 HOH A 120 420 222 HOH HOH . E 5 HOH A 121 421 217 HOH HOH . E 5 HOH A 122 422 29 HOH HOH . E 5 HOH A 123 423 75 HOH HOH . E 5 HOH A 124 424 148 HOH HOH . E 5 HOH A 125 425 157 HOH HOH . E 5 HOH A 126 426 57 HOH HOH . E 5 HOH A 127 427 122 HOH HOH . E 5 HOH A 128 428 233 HOH HOH . E 5 HOH A 129 429 155 HOH HOH . E 5 HOH A 130 430 78 HOH HOH . E 5 HOH A 131 431 290 HOH HOH . E 5 HOH A 132 432 104 HOH HOH . E 5 HOH A 133 433 51 HOH HOH . E 5 HOH A 134 434 246 HOH HOH . E 5 HOH A 135 435 160 HOH HOH . E 5 HOH A 136 436 236 HOH HOH . E 5 HOH A 137 437 109 HOH HOH . E 5 HOH A 138 438 171 HOH HOH . E 5 HOH A 139 439 113 HOH HOH . E 5 HOH A 140 440 121 HOH HOH . E 5 HOH A 141 441 147 HOH HOH . E 5 HOH A 142 442 151 HOH HOH . E 5 HOH A 143 443 72 HOH HOH . E 5 HOH A 144 444 114 HOH HOH . E 5 HOH A 145 445 103 HOH HOH . E 5 HOH A 146 446 118 HOH HOH . E 5 HOH A 147 447 112 HOH HOH . E 5 HOH A 148 448 138 HOH HOH . E 5 HOH A 149 449 182 HOH HOH . E 5 HOH A 150 450 237 HOH HOH . E 5 HOH A 151 451 70 HOH HOH . E 5 HOH A 152 452 239 HOH HOH . E 5 HOH A 153 453 205 HOH HOH . E 5 HOH A 154 454 175 HOH HOH . E 5 HOH A 155 455 111 HOH HOH . E 5 HOH A 156 456 86 HOH HOH . E 5 HOH A 157 457 96 HOH HOH . E 5 HOH A 158 458 172 HOH HOH . E 5 HOH A 159 459 289 HOH HOH . E 5 HOH A 160 460 164 HOH HOH . E 5 HOH A 161 461 43 HOH HOH . E 5 HOH A 162 462 83 HOH HOH . E 5 HOH A 163 463 247 HOH HOH . E 5 HOH A 164 464 74 HOH HOH . E 5 HOH A 165 465 249 HOH HOH . E 5 HOH A 166 466 197 HOH HOH . E 5 HOH A 167 467 88 HOH HOH . E 5 HOH A 168 468 194 HOH HOH . E 5 HOH A 169 469 241 HOH HOH . E 5 HOH A 170 470 192 HOH HOH . E 5 HOH A 171 471 125 HOH HOH . E 5 HOH A 172 472 82 HOH HOH . E 5 HOH A 173 473 179 HOH HOH . E 5 HOH A 174 474 71 HOH HOH . E 5 HOH A 175 475 251 HOH HOH . E 5 HOH A 176 476 183 HOH HOH . E 5 HOH A 177 477 102 HOH HOH . E 5 HOH A 178 478 255 HOH HOH . E 5 HOH A 179 479 117 HOH HOH . E 5 HOH A 180 480 225 HOH HOH . E 5 HOH A 181 481 149 HOH HOH . E 5 HOH A 182 482 229 HOH HOH . E 5 HOH A 183 483 201 HOH HOH . E 5 HOH A 184 484 87 HOH HOH . E 5 HOH A 185 485 115 HOH HOH . E 5 HOH A 186 486 58 HOH HOH . E 5 HOH A 187 487 196 HOH HOH . E 5 HOH A 188 488 190 HOH HOH . E 5 HOH A 189 489 184 HOH HOH . E 5 HOH A 190 490 62 HOH HOH . E 5 HOH A 191 491 174 HOH HOH . E 5 HOH A 192 492 119 HOH HOH . E 5 HOH A 193 493 235 HOH HOH . E 5 HOH A 194 494 120 HOH HOH . E 5 HOH A 195 495 156 HOH HOH . E 5 HOH A 196 496 142 HOH HOH . E 5 HOH A 197 497 139 HOH HOH . E 5 HOH A 198 498 209 HOH HOH . E 5 HOH A 199 499 244 HOH HOH . E 5 HOH A 200 500 178 HOH HOH . E 5 HOH A 201 501 131 HOH HOH . E 5 HOH A 202 502 227 HOH HOH . E 5 HOH A 203 503 193 HOH HOH . E 5 HOH A 204 504 123 HOH HOH . E 5 HOH A 205 505 267 HOH HOH . E 5 HOH A 206 506 97 HOH HOH . E 5 HOH A 207 507 284 HOH HOH . E 5 HOH A 208 508 85 HOH HOH . E 5 HOH A 209 509 124 HOH HOH . E 5 HOH A 210 510 275 HOH HOH . E 5 HOH A 211 511 253 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 ASC . . . C 3 7.667 43.152 15.099 1 18.79 ? C1 ASC 202 A 1 HETATM 2 C C2 ASC . . . C 3 8.242 42.074 15.889 1 17.85 ? C2 ASC 202 A 1 HETATM 3 C C3 ASC . . . C 3 8.524 42.557 17.1 1 17.9 ? C3 ASC 202 A 1 HETATM 4 C C4 ASC . . . C 3 8.122 43.996 17.18 1 19.13 ? C4 ASC 202 A 1 HETATM 5 C C5 ASC . . . C 3 9.285 44.936 17.491 1 19.41 ? C5 ASC 202 A 1 HETATM 6 C C6 ASC . . . C 3 8.856 46.389 17.404 1 23.4 ? C6 ASC 202 A 1 HETATM 7 O O1 ASC . . . C 3 7.269 43.137 13.946 1 19.47 ? O1 ASC 202 A 1 HETATM 8 O O2 ASC . . . C 3 8.419 40.83 15.417 1 19.6 ? O2 ASC 202 A 1 HETATM 9 O O3 ASC . . . C 3 9.069 42.03 18.198 1 18.76 ? O3 ASC 202 A 1 HETATM 10 O O4 ASC . . . C 3 7.617 44.284 15.846 1 19.38 ? O4 ASC 202 A 1 HETATM 11 O O5 ASC . . . C 3 10.369 44.69 16.58 1 21.23 ? O5 ASC 202 A 1 HETATM 12 O O6 ASC . . . C 3 9.915 47.219 17.858 1 22.16 ? O6 ASC 202 A 1 # _model_server_stats.io_time_ms 57 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 318 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 12 #