data_5JTB # _model_server_result.job_id 71uQs7uAGdWgmpcMKJ1z3Q _model_server_result.datetime_utc '2025-03-01 01:50:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5jtb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1203}' # _entry.id 5JTB # _exptl.entry_id 5JTB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 386.654 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description CHOLESTEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5JTB _cell.length_a 39.648 _cell.length_b 179.793 _cell.length_c 139.81 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5JTB _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 96 A CYS 71 1_555 A SG CYS 184 A CYS 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf2 A SG CYS 99 A CYS 74 1_555 A SG CYS 171 A CYS 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf3 A SG CYS 102 A CYS 77 1_555 A SG CYS 191 A CYS 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf4 A SG CYS 380 A CYS 259 1_555 A SG CYS 383 A CYS 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? # _chem_comp.formula 'C27 H46 O' _chem_comp.formula_weight 386.654 _chem_comp.id CLR _chem_comp.mon_nstd_flag . _chem_comp.name CHOLESTEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 CLR sing 70 n n C1 C10 CLR sing 71 n n C1 H11 CLR sing 72 n n C1 H12 CLR sing 73 n n C2 C3 CLR sing 74 n n C2 H21 CLR sing 75 n n C2 H22 CLR sing 76 n n C3 C4 CLR sing 77 n n C3 O1 CLR sing 78 n n C3 H3 CLR sing 79 n n C4 C5 CLR sing 80 n n C4 H41 CLR sing 81 n n C4 H42 CLR sing 82 n n C5 C6 CLR doub 83 n n C5 C10 CLR sing 84 n n C6 C7 CLR sing 85 n n C6 H6 CLR sing 86 n n C7 C8 CLR sing 87 n n C7 H71 CLR sing 88 n n C7 H72 CLR sing 89 n n C8 C9 CLR sing 90 n n C8 C14 CLR sing 91 n n C8 H8 CLR sing 92 n n C9 C10 CLR sing 93 n n C9 C11 CLR sing 94 n n C9 H9 CLR sing 95 n n C10 C19 CLR sing 96 n n C11 C12 CLR sing 97 n n C11 H111 CLR sing 98 n n C11 H112 CLR sing 99 n n C12 C13 CLR sing 100 n n C12 H121 CLR sing 101 n n C12 H122 CLR sing 102 n n C13 C14 CLR sing 103 n n C13 C17 CLR sing 104 n n C13 C18 CLR sing 105 n n C14 C15 CLR sing 106 n n C14 H14 CLR sing 107 n n C15 C16 CLR sing 108 n n C15 H151 CLR sing 109 n n C15 H152 CLR sing 110 n n C16 C17 CLR sing 111 n n C16 H161 CLR sing 112 n n C16 H162 CLR sing 113 n n C17 C20 CLR sing 114 n n C17 H17 CLR sing 115 n n C18 H181 CLR sing 116 n n C18 H182 CLR sing 117 n n C18 H183 CLR sing 118 n n C19 H191 CLR sing 119 n n C19 H192 CLR sing 120 n n C19 H193 CLR sing 121 n n C20 C21 CLR sing 122 n n C20 C22 CLR sing 123 n n C20 H20 CLR sing 124 n n C21 H211 CLR sing 125 n n C21 H212 CLR sing 126 n n C21 H213 CLR sing 127 n n C22 C23 CLR sing 128 n n C22 H221 CLR sing 129 n n C22 H222 CLR sing 130 n n C23 C24 CLR sing 131 n n C23 H231 CLR sing 132 n n C23 H232 CLR sing 133 n n C24 C25 CLR sing 134 n n C24 H241 CLR sing 135 n n C24 H242 CLR sing 136 n n C25 C26 CLR sing 137 n n C25 C27 CLR sing 138 n n C25 H25 CLR sing 139 n n C26 H261 CLR sing 140 n n C26 H262 CLR sing 141 n n C26 H263 CLR sing 142 n n C27 H271 CLR sing 143 n n C27 H272 CLR sing 144 n n C27 H273 CLR sing 145 n n O1 H1 CLR sing 146 n n # _atom_sites.entry_id 5JTB _atom_sites.fract_transf_matrix[1][1] 0.025222 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005562 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007153 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZMA A 1 1201 1 ZMA ZMA . C 3 CLR A 1 1202 1 CLR CLR . D 3 CLR A 1 1203 2 CLR CLR . E 3 CLR A 1 1204 3 CLR CLR . F 4 IOD A 1 1205 1 IOD IOD . G 4 IOD A 1 1206 2 IOD IOD . H 4 IOD A 1 1207 3 IOD IOD . I 4 IOD A 1 1208 4 IOD IOD . J 4 IOD A 1 1209 5 IOD IOD . K 4 IOD A 1 1210 6 IOD IOD . L 5 PEG A 1 1211 1 PEG PEG . M 5 PEG A 1 1212 2 PEG PEG . N 6 OLA A 1 1213 2407 OLA OLA . O 6 OLA A 1 1214 2408 OLA OLA . P 6 OLA A 1 1215 2414 OLA OLA . Q 6 OLA A 1 1216 2422 OLA OLA . R 7 OLC A 1 1217 2422 OLC OLC . S 7 OLC A 1 1218 2423 OLC OLC . T 7 OLC A 1 1219 2424 OLC OLC . U 7 OLC A 1 1220 2425 OLC OLC . V 7 OLC A 1 1221 2426 OLC OLC . W 7 OLC A 1 1222 2427 OLC OLC . X 8 OLB A 1 1223 2426 OLB OLB . Y 9 HOH A 1 1301 9 HOH HOH . Y 9 HOH A 2 1302 22 HOH HOH . Y 9 HOH A 3 1303 4 HOH HOH . Y 9 HOH A 4 1304 13 HOH HOH . Y 9 HOH A 5 1305 14 HOH HOH . Y 9 HOH A 6 1306 45 HOH HOH . Y 9 HOH A 7 1307 41 HOH HOH . Y 9 HOH A 8 1308 1 HOH HOH . Y 9 HOH A 9 1309 29 HOH HOH . Y 9 HOH A 10 1310 18 HOH HOH . Y 9 HOH A 11 1311 51 HOH HOH . Y 9 HOH A 12 1312 24 HOH HOH . Y 9 HOH A 13 1313 61 HOH HOH . Y 9 HOH A 14 1314 42 HOH HOH . Y 9 HOH A 15 1315 2 HOH HOH . Y 9 HOH A 16 1316 28 HOH HOH . Y 9 HOH A 17 1317 8 HOH HOH . Y 9 HOH A 18 1318 35 HOH HOH . Y 9 HOH A 19 1319 17 HOH HOH . Y 9 HOH A 20 1320 16 HOH HOH . Y 9 HOH A 21 1321 40 HOH HOH . Y 9 HOH A 22 1322 26 HOH HOH . Y 9 HOH A 23 1323 23 HOH HOH . Y 9 HOH A 24 1324 5 HOH HOH . Y 9 HOH A 25 1325 20 HOH HOH . Y 9 HOH A 26 1326 7 HOH HOH . Y 9 HOH A 27 1327 19 HOH HOH . Y 9 HOH A 28 1328 34 HOH HOH . Y 9 HOH A 29 1329 3 HOH HOH . Y 9 HOH A 30 1330 10 HOH HOH . Y 9 HOH A 31 1331 25 HOH HOH . Y 9 HOH A 32 1332 50 HOH HOH . Y 9 HOH A 33 1333 33 HOH HOH . Y 9 HOH A 34 1334 21 HOH HOH . Y 9 HOH A 35 1335 12 HOH HOH . Y 9 HOH A 36 1336 15 HOH HOH . Y 9 HOH A 37 1337 11 HOH HOH . Y 9 HOH A 38 1338 56 HOH HOH . Y 9 HOH A 39 1339 52 HOH HOH . Y 9 HOH A 40 1340 30 HOH HOH . Y 9 HOH A 41 1341 6 HOH HOH . Y 9 HOH A 42 1342 62 HOH HOH . Y 9 HOH A 43 1343 27 HOH HOH . Y 9 HOH A 44 1344 64 HOH HOH . Y 9 HOH A 45 1345 44 HOH HOH . Y 9 HOH A 46 1346 47 HOH HOH . Y 9 HOH A 47 1347 43 HOH HOH . Y 9 HOH A 48 1348 38 HOH HOH . Y 9 HOH A 49 1349 55 HOH HOH . Y 9 HOH A 50 1350 57 HOH HOH . Y 9 HOH A 51 1351 60 HOH HOH . Y 9 HOH A 52 1352 48 HOH HOH . Y 9 HOH A 53 1353 36 HOH HOH . Y 9 HOH A 54 1354 31 HOH HOH . Y 9 HOH A 55 1355 54 HOH HOH . Y 9 HOH A 56 1356 39 HOH HOH . Y 9 HOH A 57 1357 37 HOH HOH . Y 9 HOH A 58 1358 49 HOH HOH . Y 9 HOH A 59 1359 59 HOH HOH . Y 9 HOH A 60 1360 32 HOH HOH . Y 9 HOH A 61 1361 58 HOH HOH . Y 9 HOH A 62 1362 46 HOH HOH . Y 9 HOH A 63 1363 63 HOH HOH . Y 9 HOH A 64 1364 53 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CLR . . . D 3 11.355 -10.748 56.512 1 32.79 ? C1 CLR 1203 A 1 HETATM 2 C C2 CLR . . . D 3 11.462 -12.289 56.36 1 32.73 ? C2 CLR 1203 A 1 HETATM 3 C C3 CLR . . . D 3 12.878 -12.788 56.694 1 32.97 ? C3 CLR 1203 A 1 HETATM 4 C C4 CLR . . . D 3 13.32 -12.263 58.069 1 32.86 ? C4 CLR 1203 A 1 HETATM 5 C C5 CLR . . . D 3 13.167 -10.86 58.162 1 32.97 ? C5 CLR 1203 A 1 HETATM 6 C C6 CLR . . . D 3 14.318 -10.169 58.578 1 33.05 ? C6 CLR 1203 A 1 HETATM 7 C C7 CLR . . . D 3 14.444 -8.779 58.744 1 33.03 ? C7 CLR 1203 A 1 HETATM 8 C C8 CLR . . . D 3 13.083 -8.07 58.841 1 33.01 ? C8 CLR 1203 A 1 HETATM 9 C C9 CLR . . . D 3 12.118 -8.64 57.728 1 32.87 ? C9 CLR 1203 A 1 HETATM 10 C C10 CLR . . . D 3 11.904 -10.207 57.871 1 32.91 ? C10 CLR 1203 A 1 HETATM 11 C C11 CLR . . . D 3 10.765 -7.823 57.627 1 32.86 ? C11 CLR 1203 A 1 HETATM 12 C C12 CLR . . . D 3 10.972 -6.274 57.621 1 32.89 ? C12 CLR 1203 A 1 HETATM 13 C C13 CLR . . . D 3 11.848 -5.786 58.811 1 32.9 ? C13 CLR 1203 A 1 HETATM 14 C C14 CLR . . . D 3 13.217 -6.527 58.683 1 33.04 ? C14 CLR 1203 A 1 HETATM 15 C C15 CLR . . . D 3 14.129 -5.807 59.698 1 32.9 ? C15 CLR 1203 A 1 HETATM 16 C C16 CLR . . . D 3 13.736 -4.333 59.492 1 33.22 ? C16 CLR 1203 A 1 HETATM 17 C C17 CLR . . . D 3 12.441 -4.328 58.597 1 33.18 ? C17 CLR 1203 A 1 HETATM 18 C C18 CLR . . . D 3 11.111 -5.989 60.184 1 32.89 ? C18 CLR 1203 A 1 HETATM 19 C C19 CLR . . . D 3 10.899 -10.526 59.009 1 33 ? C19 CLR 1203 A 1 HETATM 20 C C20 CLR . . . D 3 11.567 -3.06 58.917 1 33.53 ? C20 CLR 1203 A 1 HETATM 21 C C21 CLR . . . D 3 10.1 -3.164 58.464 1 33.66 ? C21 CLR 1203 A 1 HETATM 22 C C22 CLR . . . D 3 12.173 -1.834 58.201 1 34.07 ? C22 CLR 1203 A 1 HETATM 23 C C23 CLR . . . D 3 12.124 -0.577 59.082 1 34.67 ? C23 CLR 1203 A 1 HETATM 24 C C24 CLR . . . D 3 11.1 0.419 58.502 1 35.17 ? C24 CLR 1203 A 1 HETATM 25 C C25 CLR . . . D 3 11.462 1.865 58.875 1 35.45 ? C25 CLR 1203 A 1 HETATM 26 C C26 CLR . . . D 3 10.978 2.805 57.768 1 35.64 ? C26 CLR 1203 A 1 HETATM 27 C C27 CLR . . . D 3 10.787 2.267 60.195 1 35.58 ? C27 CLR 1203 A 1 HETATM 28 O O1 CLR . . . D 3 12.879 -14.219 56.722 1 32.93 ? O1 CLR 1203 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 28 #