data_5JTC # _model_server_result.job_id wbraa-uy031YXpTDdmY9uQ _model_server_result.datetime_utc '2024-11-18 01:45:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5jtc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":802}' # _entry.id 5JTC # _exptl.entry_id 5JTC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 167.119 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PYRIDINE-2,4-DICARBOXYLIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5JTC _cell.length_a 50.02 _cell.length_b 91.66 _cell.length_c 123.05 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5JTC _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 312 A CYS 641 1_555 A SG CYS 319 A CYS 648 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf2 B SG CYS 16 B CYS 101 1_555 B SG CYS 25 B CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? metalc ? metalc1 A NE2 HIS 350 A HIS 679 1_555 C MN MN . A MN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? metalc ? metalc2 A NE2 HIS 396 A HIS 725 1_555 C MN MN . A MN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.172 ? metalc ? metalc3 C MN MN . A MN 801 1_555 D N1 PD2 . A PD2 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.36 ? metalc ? metalc4 C MN MN . A MN 801 1_555 D O22 PD2 . A PD2 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.194 ? metalc ? metalc5 C MN MN . A MN 801 1_555 B OD2 ASP 18 B ASP 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.705 ? metalc ? metalc6 C MN MN . A MN 801 1_555 H O HOH . B HOH 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.2 ? # _chem_comp.formula 'C7 H5 N O4' _chem_comp.formula_weight 167.119 _chem_comp.id PD2 _chem_comp.mon_nstd_flag . _chem_comp.name 'PYRIDINE-2,4-DICARBOXYLIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O42 C41 PD2 doub 250 n n C41 O41 PD2 sing 251 n n C41 C4 PD2 sing 252 n n O41 H41 PD2 sing 253 n n C4 C5 PD2 doub 254 n y C4 C3 PD2 sing 255 n y C5 C6 PD2 sing 256 n y C5 H5 PD2 sing 257 n n C6 N1 PD2 doub 258 n y C6 H6 PD2 sing 259 n n C3 C2 PD2 doub 260 n y C3 H3 PD2 sing 261 n n C2 N1 PD2 sing 262 n y C2 C21 PD2 sing 263 n n C21 O21 PD2 doub 264 n n C21 O22 PD2 sing 265 n n O22 H22 PD2 sing 266 n n # _atom_sites.entry_id 5JTC _atom_sites.fract_transf_matrix[1][1] 0.019992 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01091 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008127 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MN A 1 801 1 MN MN . D 4 PD2 A 1 802 1 PD2 PD2 . E 5 BR A 1 803 1 BR BR . F 6 GOL A 1 804 1 GOL GOL . G 7 HOH A 1 901 131 HOH HOH . G 7 HOH A 2 902 142 HOH HOH . G 7 HOH A 3 903 197 HOH HOH . G 7 HOH A 4 904 217 HOH HOH . G 7 HOH A 5 905 70 HOH HOH . G 7 HOH A 6 906 106 HOH HOH . G 7 HOH A 7 907 132 HOH HOH . G 7 HOH A 8 908 216 HOH HOH . G 7 HOH A 9 909 187 HOH HOH . G 7 HOH A 10 910 109 HOH HOH . G 7 HOH A 11 911 120 HOH HOH . G 7 HOH A 12 912 89 HOH HOH . G 7 HOH A 13 913 2 HOH HOH . G 7 HOH A 14 914 113 HOH HOH . G 7 HOH A 15 915 121 HOH HOH . G 7 HOH A 16 916 193 HOH HOH . G 7 HOH A 17 917 194 HOH HOH . G 7 HOH A 18 918 48 HOH HOH . G 7 HOH A 19 919 192 HOH HOH . G 7 HOH A 20 920 88 HOH HOH . G 7 HOH A 21 921 17 HOH HOH . G 7 HOH A 22 922 80 HOH HOH . G 7 HOH A 23 923 159 HOH HOH . G 7 HOH A 24 924 16 HOH HOH . G 7 HOH A 25 925 32 HOH HOH . G 7 HOH A 26 926 111 HOH HOH . G 7 HOH A 27 927 58 HOH HOH . G 7 HOH A 28 928 172 HOH HOH . G 7 HOH A 29 929 7 HOH HOH . G 7 HOH A 30 930 25 HOH HOH . G 7 HOH A 31 931 213 HOH HOH . G 7 HOH A 32 932 28 HOH HOH . G 7 HOH A 33 933 18 HOH HOH . G 7 HOH A 34 934 54 HOH HOH . G 7 HOH A 35 935 15 HOH HOH . G 7 HOH A 36 936 64 HOH HOH . G 7 HOH A 37 937 135 HOH HOH . G 7 HOH A 38 938 44 HOH HOH . G 7 HOH A 39 939 215 HOH HOH . G 7 HOH A 40 940 115 HOH HOH . G 7 HOH A 41 941 200 HOH HOH . G 7 HOH A 42 942 5 HOH HOH . G 7 HOH A 43 943 29 HOH HOH . G 7 HOH A 44 944 19 HOH HOH . G 7 HOH A 45 945 69 HOH HOH . G 7 HOH A 46 946 50 HOH HOH . G 7 HOH A 47 947 52 HOH HOH . G 7 HOH A 48 948 138 HOH HOH . G 7 HOH A 49 949 13 HOH HOH . G 7 HOH A 50 950 65 HOH HOH . G 7 HOH A 51 951 182 HOH HOH . G 7 HOH A 52 952 8 HOH HOH . G 7 HOH A 53 953 26 HOH HOH . G 7 HOH A 54 954 157 HOH HOH . G 7 HOH A 55 955 156 HOH HOH . G 7 HOH A 56 956 97 HOH HOH . G 7 HOH A 57 957 24 HOH HOH . G 7 HOH A 58 958 1 HOH HOH . G 7 HOH A 59 959 76 HOH HOH . G 7 HOH A 60 960 133 HOH HOH . G 7 HOH A 61 961 4 HOH HOH . G 7 HOH A 62 962 114 HOH HOH . G 7 HOH A 63 963 141 HOH HOH . G 7 HOH A 64 964 6 HOH HOH . G 7 HOH A 65 965 94 HOH HOH . G 7 HOH A 66 966 100 HOH HOH . G 7 HOH A 67 967 95 HOH HOH . G 7 HOH A 68 968 147 HOH HOH . G 7 HOH A 69 969 14 HOH HOH . G 7 HOH A 70 970 78 HOH HOH . G 7 HOH A 71 971 93 HOH HOH . G 7 HOH A 72 972 34 HOH HOH . G 7 HOH A 73 973 9 HOH HOH . G 7 HOH A 74 974 68 HOH HOH . G 7 HOH A 75 975 23 HOH HOH . G 7 HOH A 76 976 127 HOH HOH . G 7 HOH A 77 977 96 HOH HOH . G 7 HOH A 78 978 85 HOH HOH . G 7 HOH A 79 979 33 HOH HOH . G 7 HOH A 80 980 61 HOH HOH . G 7 HOH A 81 981 98 HOH HOH . G 7 HOH A 82 982 126 HOH HOH . G 7 HOH A 83 983 41 HOH HOH . G 7 HOH A 84 984 53 HOH HOH . G 7 HOH A 85 985 10 HOH HOH . G 7 HOH A 86 986 35 HOH HOH . G 7 HOH A 87 987 39 HOH HOH . G 7 HOH A 88 988 55 HOH HOH . G 7 HOH A 89 989 134 HOH HOH . G 7 HOH A 90 990 86 HOH HOH . G 7 HOH A 91 991 146 HOH HOH . G 7 HOH A 92 992 148 HOH HOH . G 7 HOH A 93 993 107 HOH HOH . G 7 HOH A 94 994 208 HOH HOH . G 7 HOH A 95 995 57 HOH HOH . G 7 HOH A 96 996 3 HOH HOH . G 7 HOH A 97 997 72 HOH HOH . G 7 HOH A 98 998 162 HOH HOH . G 7 HOH A 99 999 12 HOH HOH . G 7 HOH A 100 1000 66 HOH HOH . G 7 HOH A 101 1001 108 HOH HOH . G 7 HOH A 102 1002 143 HOH HOH . G 7 HOH A 103 1003 22 HOH HOH . G 7 HOH A 104 1004 206 HOH HOH . G 7 HOH A 105 1005 117 HOH HOH . G 7 HOH A 106 1006 178 HOH HOH . G 7 HOH A 107 1007 202 HOH HOH . G 7 HOH A 108 1008 56 HOH HOH . G 7 HOH A 109 1009 38 HOH HOH . G 7 HOH A 110 1010 170 HOH HOH . G 7 HOH A 111 1011 191 HOH HOH . G 7 HOH A 112 1012 31 HOH HOH . G 7 HOH A 113 1013 73 HOH HOH . G 7 HOH A 114 1014 176 HOH HOH . G 7 HOH A 115 1015 214 HOH HOH . G 7 HOH A 116 1016 161 HOH HOH . G 7 HOH A 117 1017 75 HOH HOH . G 7 HOH A 118 1018 164 HOH HOH . G 7 HOH A 119 1019 175 HOH HOH . G 7 HOH A 120 1020 136 HOH HOH . G 7 HOH A 121 1021 42 HOH HOH . G 7 HOH A 122 1022 122 HOH HOH . G 7 HOH A 123 1023 47 HOH HOH . G 7 HOH A 124 1024 51 HOH HOH . G 7 HOH A 125 1025 82 HOH HOH . G 7 HOH A 126 1026 125 HOH HOH . G 7 HOH A 127 1027 59 HOH HOH . G 7 HOH A 128 1028 46 HOH HOH . G 7 HOH A 129 1029 45 HOH HOH . G 7 HOH A 130 1030 212 HOH HOH . G 7 HOH A 131 1031 87 HOH HOH . G 7 HOH A 132 1032 91 HOH HOH . G 7 HOH A 133 1033 119 HOH HOH . G 7 HOH A 134 1034 40 HOH HOH . G 7 HOH A 135 1035 123 HOH HOH . G 7 HOH A 136 1036 83 HOH HOH . G 7 HOH A 137 1037 49 HOH HOH . G 7 HOH A 138 1038 43 HOH HOH . G 7 HOH A 139 1039 160 HOH HOH . G 7 HOH A 140 1040 36 HOH HOH . G 7 HOH A 141 1041 71 HOH HOH . G 7 HOH A 142 1042 198 HOH HOH . G 7 HOH A 143 1043 124 HOH HOH . G 7 HOH A 144 1044 118 HOH HOH . G 7 HOH A 145 1045 211 HOH HOH . G 7 HOH A 146 1046 105 HOH HOH . G 7 HOH A 147 1047 201 HOH HOH . G 7 HOH A 148 1048 184 HOH HOH . G 7 HOH A 149 1049 169 HOH HOH . G 7 HOH A 150 1050 171 HOH HOH . G 7 HOH A 151 1051 185 HOH HOH . G 7 HOH A 152 1052 155 HOH HOH . G 7 HOH A 153 1053 150 HOH HOH . G 7 HOH A 154 1054 21 HOH HOH . G 7 HOH A 155 1055 204 HOH HOH . G 7 HOH A 156 1056 63 HOH HOH . G 7 HOH A 157 1057 166 HOH HOH . G 7 HOH A 158 1058 79 HOH HOH . G 7 HOH A 159 1059 104 HOH HOH . G 7 HOH A 160 1060 173 HOH HOH . G 7 HOH A 161 1061 30 HOH HOH . G 7 HOH A 162 1062 210 HOH HOH . G 7 HOH A 163 1063 129 HOH HOH . G 7 HOH A 164 1064 112 HOH HOH . G 7 HOH A 165 1065 140 HOH HOH . G 7 HOH A 166 1066 81 HOH HOH . G 7 HOH A 167 1067 177 HOH HOH . G 7 HOH A 168 1068 139 HOH HOH . G 7 HOH A 169 1069 196 HOH HOH . G 7 HOH A 170 1070 203 HOH HOH . G 7 HOH A 171 1071 190 HOH HOH . G 7 HOH A 172 1072 145 HOH HOH . G 7 HOH A 173 1073 179 HOH HOH . G 7 HOH A 174 1074 163 HOH HOH . G 7 HOH A 175 1075 181 HOH HOH . G 7 HOH A 176 1076 207 HOH HOH . G 7 HOH A 177 1077 110 HOH HOH . G 7 HOH A 178 1078 188 HOH HOH . G 7 HOH A 179 1079 158 HOH HOH . G 7 HOH A 180 1080 149 HOH HOH . G 7 HOH A 181 1081 62 HOH HOH . G 7 HOH A 182 1082 168 HOH HOH . G 7 HOH A 183 1083 183 HOH HOH . G 7 HOH A 184 1084 77 HOH HOH . G 7 HOH A 185 1085 151 HOH HOH . G 7 HOH A 186 1086 189 HOH HOH . G 7 HOH A 187 1087 128 HOH HOH . G 7 HOH A 188 1088 209 HOH HOH . G 7 HOH A 189 1089 205 HOH HOH . G 7 HOH A 190 1090 180 HOH HOH . G 7 HOH A 191 1091 60 HOH HOH . G 7 HOH A 192 1092 199 HOH HOH . G 7 HOH A 193 1093 165 HOH HOH . G 7 HOH A 194 1094 130 HOH HOH . G 7 HOH A 195 1095 174 HOH HOH . G 7 HOH A 196 1096 186 HOH HOH . G 7 HOH A 197 1097 101 HOH HOH . G 7 HOH A 198 1098 144 HOH HOH . G 7 HOH A 199 1099 152 HOH HOH . G 7 HOH A 200 1100 102 HOH HOH . G 7 HOH A 201 1101 27 HOH HOH . G 7 HOH A 202 1102 92 HOH HOH . G 7 HOH A 203 1103 195 HOH HOH . H 7 HOH B 1 201 67 HOH HOH . H 7 HOH B 2 202 153 HOH HOH . H 7 HOH B 3 203 20 HOH HOH . H 7 HOH B 4 204 11 HOH HOH . H 7 HOH B 5 205 84 HOH HOH . H 7 HOH B 6 206 103 HOH HOH . H 7 HOH B 7 207 137 HOH HOH . H 7 HOH B 8 208 37 HOH HOH . H 7 HOH B 9 209 116 HOH HOH . H 7 HOH B 10 210 90 HOH HOH . H 7 HOH B 11 211 74 HOH HOH . H 7 HOH B 12 212 154 HOH HOH . H 7 HOH B 13 213 99 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O42 PD2 . . . D 4 59.753 16.982 11.664 1 31.53 ? O42 PD2 802 A 1 HETATM 2 C C41 PD2 . . . D 4 59.289 17.833 12.466 1 30.16 ? C41 PD2 802 A 1 HETATM 3 O O41 PD2 . . . D 4 58.915 18.96 12.051 1 30.17 ? O41 PD2 802 A 1 HETATM 4 C C4 PD2 . . . D 4 59.188 17.494 13.947 1 27.65 ? C4 PD2 802 A 1 HETATM 5 C C5 PD2 . . . D 4 60.179 16.796 14.552 1 27.7 ? C5 PD2 802 A 1 HETATM 6 C C6 PD2 . . . D 4 60.085 16.485 15.898 1 26.51 ? C6 PD2 802 A 1 HETATM 7 C C3 PD2 . . . D 4 58.11 17.898 14.66 1 25.89 ? C3 PD2 802 A 1 HETATM 8 C C2 PD2 . . . D 4 58.02 17.584 16.006 1 26.68 ? C2 PD2 802 A 1 HETATM 9 N N1 PD2 . . . D 4 59.006 16.883 16.611 1 26.81 ? N1 PD2 802 A 1 HETATM 10 C C21 PD2 . . . D 4 56.803 18.039 16.806 1 27.89 ? C21 PD2 802 A 1 HETATM 11 O O21 PD2 . . . D 4 55.813 18.538 16.208 1 27.81 ? O21 PD2 802 A 1 HETATM 12 O O22 PD2 . . . D 4 56.791 17.915 18.061 1 29 ? O22 PD2 802 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 12 #