data_5JTC
#
_model_server_result.job_id            glDJjIjjgu0RJvQSfgD8JA 
_model_server_result.datetime_utc      '2024-11-18 01:33:02' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5jtc 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":804}' 
#
_entry.id    5JTC 
#
_exptl.entry_id    5JTC 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5JTC 
_cell.length_a            50.02 
_cell.length_b            91.66 
_cell.length_c            123.05 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5JTC 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      6 
_struct_asym.id                             F 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 312 A CYS 641 1_555 A SG CYS 319 A CYS 648 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? 
disulf ? disulf2 B SG CYS 16 B CYS 101 1_555 B SG CYS 25 B CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
metalc ? metalc1 A NE2 HIS 350 A HIS 679 1_555 C MN MN . A MN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? 
metalc ? metalc2 A NE2 HIS 396 A HIS 725 1_555 C MN MN . A MN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.172 ? 
metalc ? metalc3 C MN MN . A MN 801 1_555 D N1 PD2 . A PD2 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.36 ? 
metalc ? metalc4 C MN MN . A MN 801 1_555 D O22 PD2 . A PD2 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.194 ? 
metalc ? metalc5 C MN MN . A MN 801 1_555 B OD2 ASP 18 B ASP 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.705 ? 
metalc ? metalc6 C MN MN . A MN 801 1_555 H O HOH . B HOH 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.2 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     5JTC 
_atom_sites.fract_transf_matrix[1][1]    0.019992 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01091 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008127 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 MN A 1 801 1 MN MN . 
D 4 PD2 A 1 802 1 PD2 PD2 . 
E 5 BR A 1 803 1 BR BR . 
F 6 GOL A 1 804 1 GOL GOL . 
G 7 HOH A 1 901 131 HOH HOH . 
G 7 HOH A 2 902 142 HOH HOH . 
G 7 HOH A 3 903 197 HOH HOH . 
G 7 HOH A 4 904 217 HOH HOH . 
G 7 HOH A 5 905 70 HOH HOH . 
G 7 HOH A 6 906 106 HOH HOH . 
G 7 HOH A 7 907 132 HOH HOH . 
G 7 HOH A 8 908 216 HOH HOH . 
G 7 HOH A 9 909 187 HOH HOH . 
G 7 HOH A 10 910 109 HOH HOH . 
G 7 HOH A 11 911 120 HOH HOH . 
G 7 HOH A 12 912 89 HOH HOH . 
G 7 HOH A 13 913 2 HOH HOH . 
G 7 HOH A 14 914 113 HOH HOH . 
G 7 HOH A 15 915 121 HOH HOH . 
G 7 HOH A 16 916 193 HOH HOH . 
G 7 HOH A 17 917 194 HOH HOH . 
G 7 HOH A 18 918 48 HOH HOH . 
G 7 HOH A 19 919 192 HOH HOH . 
G 7 HOH A 20 920 88 HOH HOH . 
G 7 HOH A 21 921 17 HOH HOH . 
G 7 HOH A 22 922 80 HOH HOH . 
G 7 HOH A 23 923 159 HOH HOH . 
G 7 HOH A 24 924 16 HOH HOH . 
G 7 HOH A 25 925 32 HOH HOH . 
G 7 HOH A 26 926 111 HOH HOH . 
G 7 HOH A 27 927 58 HOH HOH . 
G 7 HOH A 28 928 172 HOH HOH . 
G 7 HOH A 29 929 7 HOH HOH . 
G 7 HOH A 30 930 25 HOH HOH . 
G 7 HOH A 31 931 213 HOH HOH . 
G 7 HOH A 32 932 28 HOH HOH . 
G 7 HOH A 33 933 18 HOH HOH . 
G 7 HOH A 34 934 54 HOH HOH . 
G 7 HOH A 35 935 15 HOH HOH . 
G 7 HOH A 36 936 64 HOH HOH . 
G 7 HOH A 37 937 135 HOH HOH . 
G 7 HOH A 38 938 44 HOH HOH . 
G 7 HOH A 39 939 215 HOH HOH . 
G 7 HOH A 40 940 115 HOH HOH . 
G 7 HOH A 41 941 200 HOH HOH . 
G 7 HOH A 42 942 5 HOH HOH . 
G 7 HOH A 43 943 29 HOH HOH . 
G 7 HOH A 44 944 19 HOH HOH . 
G 7 HOH A 45 945 69 HOH HOH . 
G 7 HOH A 46 946 50 HOH HOH . 
G 7 HOH A 47 947 52 HOH HOH . 
G 7 HOH A 48 948 138 HOH HOH . 
G 7 HOH A 49 949 13 HOH HOH . 
G 7 HOH A 50 950 65 HOH HOH . 
G 7 HOH A 51 951 182 HOH HOH . 
G 7 HOH A 52 952 8 HOH HOH . 
G 7 HOH A 53 953 26 HOH HOH . 
G 7 HOH A 54 954 157 HOH HOH . 
G 7 HOH A 55 955 156 HOH HOH . 
G 7 HOH A 56 956 97 HOH HOH . 
G 7 HOH A 57 957 24 HOH HOH . 
G 7 HOH A 58 958 1 HOH HOH . 
G 7 HOH A 59 959 76 HOH HOH . 
G 7 HOH A 60 960 133 HOH HOH . 
G 7 HOH A 61 961 4 HOH HOH . 
G 7 HOH A 62 962 114 HOH HOH . 
G 7 HOH A 63 963 141 HOH HOH . 
G 7 HOH A 64 964 6 HOH HOH . 
G 7 HOH A 65 965 94 HOH HOH . 
G 7 HOH A 66 966 100 HOH HOH . 
G 7 HOH A 67 967 95 HOH HOH . 
G 7 HOH A 68 968 147 HOH HOH . 
G 7 HOH A 69 969 14 HOH HOH . 
G 7 HOH A 70 970 78 HOH HOH . 
G 7 HOH A 71 971 93 HOH HOH . 
G 7 HOH A 72 972 34 HOH HOH . 
G 7 HOH A 73 973 9 HOH HOH . 
G 7 HOH A 74 974 68 HOH HOH . 
G 7 HOH A 75 975 23 HOH HOH . 
G 7 HOH A 76 976 127 HOH HOH . 
G 7 HOH A 77 977 96 HOH HOH . 
G 7 HOH A 78 978 85 HOH HOH . 
G 7 HOH A 79 979 33 HOH HOH . 
G 7 HOH A 80 980 61 HOH HOH . 
G 7 HOH A 81 981 98 HOH HOH . 
G 7 HOH A 82 982 126 HOH HOH . 
G 7 HOH A 83 983 41 HOH HOH . 
G 7 HOH A 84 984 53 HOH HOH . 
G 7 HOH A 85 985 10 HOH HOH . 
G 7 HOH A 86 986 35 HOH HOH . 
G 7 HOH A 87 987 39 HOH HOH . 
G 7 HOH A 88 988 55 HOH HOH . 
G 7 HOH A 89 989 134 HOH HOH . 
G 7 HOH A 90 990 86 HOH HOH . 
G 7 HOH A 91 991 146 HOH HOH . 
G 7 HOH A 92 992 148 HOH HOH . 
G 7 HOH A 93 993 107 HOH HOH . 
G 7 HOH A 94 994 208 HOH HOH . 
G 7 HOH A 95 995 57 HOH HOH . 
G 7 HOH A 96 996 3 HOH HOH . 
G 7 HOH A 97 997 72 HOH HOH . 
G 7 HOH A 98 998 162 HOH HOH . 
G 7 HOH A 99 999 12 HOH HOH . 
G 7 HOH A 100 1000 66 HOH HOH . 
G 7 HOH A 101 1001 108 HOH HOH . 
G 7 HOH A 102 1002 143 HOH HOH . 
G 7 HOH A 103 1003 22 HOH HOH . 
G 7 HOH A 104 1004 206 HOH HOH . 
G 7 HOH A 105 1005 117 HOH HOH . 
G 7 HOH A 106 1006 178 HOH HOH . 
G 7 HOH A 107 1007 202 HOH HOH . 
G 7 HOH A 108 1008 56 HOH HOH . 
G 7 HOH A 109 1009 38 HOH HOH . 
G 7 HOH A 110 1010 170 HOH HOH . 
G 7 HOH A 111 1011 191 HOH HOH . 
G 7 HOH A 112 1012 31 HOH HOH . 
G 7 HOH A 113 1013 73 HOH HOH . 
G 7 HOH A 114 1014 176 HOH HOH . 
G 7 HOH A 115 1015 214 HOH HOH . 
G 7 HOH A 116 1016 161 HOH HOH . 
G 7 HOH A 117 1017 75 HOH HOH . 
G 7 HOH A 118 1018 164 HOH HOH . 
G 7 HOH A 119 1019 175 HOH HOH . 
G 7 HOH A 120 1020 136 HOH HOH . 
G 7 HOH A 121 1021 42 HOH HOH . 
G 7 HOH A 122 1022 122 HOH HOH . 
G 7 HOH A 123 1023 47 HOH HOH . 
G 7 HOH A 124 1024 51 HOH HOH . 
G 7 HOH A 125 1025 82 HOH HOH . 
G 7 HOH A 126 1026 125 HOH HOH . 
G 7 HOH A 127 1027 59 HOH HOH . 
G 7 HOH A 128 1028 46 HOH HOH . 
G 7 HOH A 129 1029 45 HOH HOH . 
G 7 HOH A 130 1030 212 HOH HOH . 
G 7 HOH A 131 1031 87 HOH HOH . 
G 7 HOH A 132 1032 91 HOH HOH . 
G 7 HOH A 133 1033 119 HOH HOH . 
G 7 HOH A 134 1034 40 HOH HOH . 
G 7 HOH A 135 1035 123 HOH HOH . 
G 7 HOH A 136 1036 83 HOH HOH . 
G 7 HOH A 137 1037 49 HOH HOH . 
G 7 HOH A 138 1038 43 HOH HOH . 
G 7 HOH A 139 1039 160 HOH HOH . 
G 7 HOH A 140 1040 36 HOH HOH . 
G 7 HOH A 141 1041 71 HOH HOH . 
G 7 HOH A 142 1042 198 HOH HOH . 
G 7 HOH A 143 1043 124 HOH HOH . 
G 7 HOH A 144 1044 118 HOH HOH . 
G 7 HOH A 145 1045 211 HOH HOH . 
G 7 HOH A 146 1046 105 HOH HOH . 
G 7 HOH A 147 1047 201 HOH HOH . 
G 7 HOH A 148 1048 184 HOH HOH . 
G 7 HOH A 149 1049 169 HOH HOH . 
G 7 HOH A 150 1050 171 HOH HOH . 
G 7 HOH A 151 1051 185 HOH HOH . 
G 7 HOH A 152 1052 155 HOH HOH . 
G 7 HOH A 153 1053 150 HOH HOH . 
G 7 HOH A 154 1054 21 HOH HOH . 
G 7 HOH A 155 1055 204 HOH HOH . 
G 7 HOH A 156 1056 63 HOH HOH . 
G 7 HOH A 157 1057 166 HOH HOH . 
G 7 HOH A 158 1058 79 HOH HOH . 
G 7 HOH A 159 1059 104 HOH HOH . 
G 7 HOH A 160 1060 173 HOH HOH . 
G 7 HOH A 161 1061 30 HOH HOH . 
G 7 HOH A 162 1062 210 HOH HOH . 
G 7 HOH A 163 1063 129 HOH HOH . 
G 7 HOH A 164 1064 112 HOH HOH . 
G 7 HOH A 165 1065 140 HOH HOH . 
G 7 HOH A 166 1066 81 HOH HOH . 
G 7 HOH A 167 1067 177 HOH HOH . 
G 7 HOH A 168 1068 139 HOH HOH . 
G 7 HOH A 169 1069 196 HOH HOH . 
G 7 HOH A 170 1070 203 HOH HOH . 
G 7 HOH A 171 1071 190 HOH HOH . 
G 7 HOH A 172 1072 145 HOH HOH . 
G 7 HOH A 173 1073 179 HOH HOH . 
G 7 HOH A 174 1074 163 HOH HOH . 
G 7 HOH A 175 1075 181 HOH HOH . 
G 7 HOH A 176 1076 207 HOH HOH . 
G 7 HOH A 177 1077 110 HOH HOH . 
G 7 HOH A 178 1078 188 HOH HOH . 
G 7 HOH A 179 1079 158 HOH HOH . 
G 7 HOH A 180 1080 149 HOH HOH . 
G 7 HOH A 181 1081 62 HOH HOH . 
G 7 HOH A 182 1082 168 HOH HOH . 
G 7 HOH A 183 1083 183 HOH HOH . 
G 7 HOH A 184 1084 77 HOH HOH . 
G 7 HOH A 185 1085 151 HOH HOH . 
G 7 HOH A 186 1086 189 HOH HOH . 
G 7 HOH A 187 1087 128 HOH HOH . 
G 7 HOH A 188 1088 209 HOH HOH . 
G 7 HOH A 189 1089 205 HOH HOH . 
G 7 HOH A 190 1090 180 HOH HOH . 
G 7 HOH A 191 1091 60 HOH HOH . 
G 7 HOH A 192 1092 199 HOH HOH . 
G 7 HOH A 193 1093 165 HOH HOH . 
G 7 HOH A 194 1094 130 HOH HOH . 
G 7 HOH A 195 1095 174 HOH HOH . 
G 7 HOH A 196 1096 186 HOH HOH . 
G 7 HOH A 197 1097 101 HOH HOH . 
G 7 HOH A 198 1098 144 HOH HOH . 
G 7 HOH A 199 1099 152 HOH HOH . 
G 7 HOH A 200 1100 102 HOH HOH . 
G 7 HOH A 201 1101 27 HOH HOH . 
G 7 HOH A 202 1102 92 HOH HOH . 
G 7 HOH A 203 1103 195 HOH HOH . 
H 7 HOH B 1 201 67 HOH HOH . 
H 7 HOH B 2 202 153 HOH HOH . 
H 7 HOH B 3 203 20 HOH HOH . 
H 7 HOH B 4 204 11 HOH HOH . 
H 7 HOH B 5 205 84 HOH HOH . 
H 7 HOH B 6 206 103 HOH HOH . 
H 7 HOH B 7 207 137 HOH HOH . 
H 7 HOH B 8 208 37 HOH HOH . 
H 7 HOH B 9 209 116 HOH HOH . 
H 7 HOH B 10 210 90 HOH HOH . 
H 7 HOH B 11 211 74 HOH HOH . 
H 7 HOH B 12 212 154 HOH HOH . 
H 7 HOH B 13 213 99 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . F 6 78.37 32.678 57.429 1 54.53 ? C1 GOL 804 A 1 
HETATM 2 O O1 GOL . . . F 6 79.345 32.768 56.418 1 51.78 ? O1 GOL 804 A 1 
HETATM 3 C C2 GOL . . . F 6 77.532 31.425 57.216 1 60.06 ? C2 GOL 804 A 1 
HETATM 4 O O2 GOL . . . F 6 78.332 30.269 57.311 1 65.65 ? O2 GOL 804 A 1 
HETATM 5 C C3 GOL . . . F 6 76.427 31.351 58.263 1 59.07 ? C3 GOL 804 A 1 
HETATM 6 O O3 GOL . . . F 6 75.723 30.139 58.116 1 58.35 ? O3 GOL 804 A 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           21 
_model_server_stats.create_model_time_ms    17 
_model_server_stats.query_time_ms           329 
_model_server_stats.encode_time_ms          10 
_model_server_stats.element_count           6 
#