data_5JTH # _model_server_result.job_id 1eCW28sQGYgoQMYQt6323w _model_server_result.datetime_utc '2024-10-28 02:42:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5jth # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":403}' # _entry.id 5JTH # _exptl.entry_id 5JTH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 97.18 _cell.angle_gamma 90 _cell.entry_id 5JTH _cell.length_a 29.094 _cell.length_b 57.053 _cell.length_c 44.871 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5JTH _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B C MET 21 B MET 20 1_555 B N NH2 22 B NH2 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.352 ? metalc ? metalc1 A OD1 ASP 21 A ASP 20 1_555 C CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? metalc ? metalc2 A OD1 ASP 23 A ASP 22 1_555 C CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.384 ? metalc ? metalc3 A OD1 ASP 25 A ASP 24 1_555 C CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? metalc ? metalc4 A O THR 27 A THR 26 1_555 C CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.263 ? metalc ? metalc5 A OE1 GLU 32 A GLU 31 1_555 C CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.355 ? metalc ? metalc6 A OE2 GLU 32 A GLU 31 1_555 C CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.419 ? metalc ? metalc7 A OD1 ASP 57 A ASP 56 1_555 D CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.51 ? metalc ? metalc8 A OD1 ASP 59 A ASP 58 1_555 D CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.79 ? metalc ? metalc9 A OD2 ASP 59 A ASP 58 1_555 D CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.578 ? metalc ? metalc10 A OD1 ASN 61 A ASN 60 1_555 D CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.274 ? metalc ? metalc11 A O THR 63 A THR 62 1_555 D CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.647 ? metalc ? metalc12 A OD1 ASP 94 A ASP 93 1_555 E CA CA . A CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? metalc ? metalc13 A OD1 ASP 96 A ASP 95 1_555 E CA CA . A CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.428 ? metalc ? metalc14 A OD1 ASN 98 A ASN 97 1_555 E CA CA . A CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.389 ? metalc ? metalc15 A O TYR 100 A TYR 99 1_555 E CA CA . A CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.245 ? metalc ? metalc16 A OE1 GLU 105 A GLU 104 1_555 E CA CA . A CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.424 ? metalc ? metalc17 A OE2 GLU 105 A GLU 104 1_555 E CA CA . A CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.634 ? metalc ? metalc18 A OD1 ASP 130 A ASP 129 1_555 F CA CA . A CA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.341 ? metalc ? metalc19 A OD1 ASP 132 A ASP 131 1_555 F CA CA . A CA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? metalc ? metalc20 A OD1 ASP 134 A ASP 133 1_555 F CA CA . A CA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.399 ? metalc ? metalc21 A O GLN 136 A GLN 135 1_555 F CA CA . A CA 404 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.281 ? metalc ? metalc22 A O GLN 136 A GLN 135 1_555 F CA CA . A CA 404 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.354 ? metalc ? metalc23 A OE1 GLU 141 A GLU 140 1_555 F CA CA . A CA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.377 ? metalc ? metalc24 A OE2 GLU 141 A GLU 140 1_555 F CA CA . A CA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.585 ? metalc ? metalc25 C CA CA . A CA 401 1_555 G O HOH . A HOH 529 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.407 ? metalc ? metalc26 D CA CA . A CA 402 1_555 G O HOH . A HOH 519 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.589 ? metalc ? metalc27 D CA CA . A CA 402 1_555 G O HOH . A HOH 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.605 ? metalc ? metalc28 E CA CA . A CA 403 1_555 G O HOH . A HOH 511 2_444 ? ? ? ? ? ? ? ? ? ? ? ? 2.429 ? metalc ? metalc29 F CA CA . A CA 404 1_555 G O HOH . A HOH 522 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.381 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5JTH _atom_sites.fract_transf_matrix[1][1] 0.034371 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00433 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017528 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022462 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CA A 1 401 401 CA CA . D 3 CA A 1 402 402 CA CA . E 3 CA A 1 403 403 CA CA . F 3 CA A 1 404 404 CA CA . G 4 HOH A 1 501 111 HOH HOH . G 4 HOH A 2 502 19 HOH HOH . G 4 HOH A 3 503 87 HOH HOH . G 4 HOH A 4 504 85 HOH HOH . G 4 HOH A 5 505 24 HOH HOH . G 4 HOH A 6 506 123 HOH HOH . G 4 HOH A 7 507 99 HOH HOH . G 4 HOH A 8 508 103 HOH HOH . G 4 HOH A 9 509 94 HOH HOH . G 4 HOH A 10 510 22 HOH HOH . G 4 HOH A 11 511 6 HOH HOH . G 4 HOH A 12 512 42 HOH HOH . G 4 HOH A 13 513 31 HOH HOH . G 4 HOH A 14 514 114 HOH HOH . G 4 HOH A 15 515 57 HOH HOH . G 4 HOH A 16 516 64 HOH HOH . G 4 HOH A 17 517 48 HOH HOH . G 4 HOH A 18 518 67 HOH HOH . G 4 HOH A 19 519 112 HOH HOH . G 4 HOH A 20 520 43 HOH HOH . G 4 HOH A 21 521 3 HOH HOH . G 4 HOH A 22 522 1 HOH HOH . G 4 HOH A 23 523 10 HOH HOH . G 4 HOH A 24 524 110 HOH HOH . G 4 HOH A 25 525 25 HOH HOH . G 4 HOH A 26 526 35 HOH HOH . G 4 HOH A 27 527 38 HOH HOH . G 4 HOH A 28 528 116 HOH HOH . G 4 HOH A 29 529 2 HOH HOH . G 4 HOH A 30 530 124 HOH HOH . G 4 HOH A 31 531 14 HOH HOH . G 4 HOH A 32 532 21 HOH HOH . G 4 HOH A 33 533 70 HOH HOH . G 4 HOH A 34 534 53 HOH HOH . G 4 HOH A 35 535 39 HOH HOH . G 4 HOH A 36 536 16 HOH HOH . G 4 HOH A 37 537 102 HOH HOH . G 4 HOH A 38 538 83 HOH HOH . G 4 HOH A 39 539 106 HOH HOH . G 4 HOH A 40 540 69 HOH HOH . G 4 HOH A 41 541 93 HOH HOH . G 4 HOH A 42 542 60 HOH HOH . G 4 HOH A 43 543 30 HOH HOH . G 4 HOH A 44 544 12 HOH HOH . G 4 HOH A 45 545 50 HOH HOH . G 4 HOH A 46 546 68 HOH HOH . G 4 HOH A 47 547 27 HOH HOH . G 4 HOH A 48 548 55 HOH HOH . G 4 HOH A 49 549 8 HOH HOH . G 4 HOH A 50 550 49 HOH HOH . G 4 HOH A 51 551 105 HOH HOH . G 4 HOH A 52 552 26 HOH HOH . G 4 HOH A 53 553 56 HOH HOH . G 4 HOH A 54 554 9 HOH HOH . G 4 HOH A 55 555 32 HOH HOH . G 4 HOH A 56 556 66 HOH HOH . G 4 HOH A 57 557 52 HOH HOH . G 4 HOH A 58 558 44 HOH HOH . G 4 HOH A 59 559 33 HOH HOH . G 4 HOH A 60 560 115 HOH HOH . G 4 HOH A 61 561 51 HOH HOH . G 4 HOH A 62 562 95 HOH HOH . G 4 HOH A 63 563 88 HOH HOH . G 4 HOH A 64 564 84 HOH HOH . G 4 HOH A 65 565 71 HOH HOH . G 4 HOH A 66 566 65 HOH HOH . G 4 HOH A 67 567 86 HOH HOH . G 4 HOH A 68 568 119 HOH HOH . G 4 HOH A 69 569 11 HOH HOH . G 4 HOH A 70 570 23 HOH HOH . G 4 HOH A 71 571 7 HOH HOH . G 4 HOH A 72 572 75 HOH HOH . G 4 HOH A 73 573 34 HOH HOH . G 4 HOH A 74 574 5 HOH HOH . G 4 HOH A 75 575 46 HOH HOH . G 4 HOH A 76 576 40 HOH HOH . G 4 HOH A 77 577 89 HOH HOH . G 4 HOH A 78 578 20 HOH HOH . G 4 HOH A 79 579 13 HOH HOH . G 4 HOH A 80 580 45 HOH HOH . G 4 HOH A 81 581 108 HOH HOH . G 4 HOH A 82 582 17 HOH HOH . G 4 HOH A 83 583 47 HOH HOH . G 4 HOH A 84 584 36 HOH HOH . G 4 HOH A 85 585 63 HOH HOH . G 4 HOH A 86 586 74 HOH HOH . G 4 HOH A 87 587 59 HOH HOH . G 4 HOH A 88 588 91 HOH HOH . G 4 HOH A 89 589 125 HOH HOH . G 4 HOH A 90 590 15 HOH HOH . G 4 HOH A 91 591 61 HOH HOH . G 4 HOH A 92 592 72 HOH HOH . G 4 HOH A 93 593 37 HOH HOH . G 4 HOH A 94 594 82 HOH HOH . G 4 HOH A 95 595 41 HOH HOH . G 4 HOH A 96 596 120 HOH HOH . G 4 HOH A 97 597 117 HOH HOH . G 4 HOH A 98 598 18 HOH HOH . G 4 HOH A 99 599 90 HOH HOH . G 4 HOH A 100 600 54 HOH HOH . G 4 HOH A 101 601 4 HOH HOH . G 4 HOH A 102 602 109 HOH HOH . G 4 HOH A 103 603 98 HOH HOH . G 4 HOH A 104 604 76 HOH HOH . G 4 HOH A 105 605 118 HOH HOH . G 4 HOH A 106 606 92 HOH HOH . G 4 HOH A 107 607 122 HOH HOH . G 4 HOH A 108 608 97 HOH HOH . G 4 HOH A 109 609 73 HOH HOH . G 4 HOH A 110 610 121 HOH HOH . G 4 HOH A 111 611 62 HOH HOH . G 4 HOH A 112 612 58 HOH HOH . G 4 HOH A 113 613 113 HOH HOH . G 4 HOH A 114 614 80 HOH HOH . H 4 HOH B 1 101 101 HOH HOH . H 4 HOH B 2 102 29 HOH HOH . H 4 HOH B 3 103 28 HOH HOH . H 4 HOH B 4 104 96 HOH HOH . H 4 HOH B 5 105 104 HOH HOH . H 4 HOH B 6 106 78 HOH HOH . H 4 HOH B 7 107 107 HOH HOH . H 4 HOH B 8 108 77 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 3 _atom_site.Cartn_x -4.798 _atom_site.Cartn_y -23.916 _atom_site.Cartn_z -21.231 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 18.56 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 403 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 217 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #