data_5JTY # _model_server_result.job_id -QAcMbZHv_W6qSHbOm1wAA _model_server_result.datetime_utc '2024-11-25 17:02:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5jty # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":601}' # _entry.id 5JTY # _exptl.entry_id 5JTY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 453.486 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-({[(3,4-difluorophenyl)sulfonyl]amino}methyl)-6-methyl-N-[(2-methyl-1,3-thiazol-5-yl)methyl]pyrazine-2-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5JTY _cell.length_a 54.569 _cell.length_b 89.684 _cell.length_c 130.415 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5JTY _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 28 A CYS 28 1_555 A SG CYS 62 A CYS 62 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 A SG CYS 44 A CYS 44 1_555 A SG CYS 63 A CYS 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf3 B SG CYS 29 B CYS 32 1_555 B SG CYS 55 B CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf4 B SG CYS 36 B CYS 39 1_555 B SG CYS 56 B CYS 59 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf5 B SG CYS 226 B CYS 229 1_555 B SG CYS 281 B CYS 284 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? # _chem_comp.formula 'C18 H17 F2 N5 O3 S2' _chem_comp.formula_weight 453.486 _chem_comp.id 6ND _chem_comp.mon_nstd_flag . _chem_comp.name 5-({[(3,4-difluorophenyl)sulfonyl]amino}methyl)-6-methyl-N-[(2-methyl-1,3-thiazol-5-yl)methyl]pyrazine-2-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N15 C14 6ND doub 29 n y N15 C10 6ND sing 30 n y C14 C13 6ND sing 31 n y C05 C06 6ND doub 32 n y C05 C04 6ND sing 33 n y C06 C01 6ND sing 34 n y N08 C09 6ND sing 35 n n N08 S07 6ND sing 36 n n O17 C16 6ND doub 37 n n O27 S07 6ND doub 38 n n C09 C10 6ND sing 39 n n C10 C11 6ND doub 40 n y S07 C04 6ND sing 41 n n S07 O28 6ND doub 42 n n C04 C03 6ND doub 43 n y C13 C16 6ND sing 44 n n C13 N12 6ND doub 45 n y C01 F30 6ND sing 46 n n C01 C02 6ND doub 47 n y C16 N18 6ND sing 48 n n C11 N12 6ND sing 49 n y C11 C26 6ND sing 50 n n C03 C02 6ND sing 51 n y C02 F29 6ND sing 52 n n N18 C19 6ND sing 53 n n C19 C20 6ND sing 54 n n C24 C20 6ND doub 55 n y C24 N23 6ND sing 56 n y C20 S21 6ND sing 57 n y N23 C22 6ND doub 58 n y C22 S21 6ND sing 59 n y C22 C25 6ND sing 60 n n C14 H1 6ND sing 61 n n C24 H2 6ND sing 62 n n C25 H3 6ND sing 63 n n C25 H4 6ND sing 64 n n C25 H5 6ND sing 65 n n C26 H6 6ND sing 66 n n C26 H7 6ND sing 67 n n C26 H8 6ND sing 68 n n C03 H9 6ND sing 69 n n C05 H10 6ND sing 70 n n C06 H11 6ND sing 71 n n N08 H12 6ND sing 72 n n C09 H13 6ND sing 73 n n C09 H14 6ND sing 74 n n N18 H15 6ND sing 75 n n C19 H16 6ND sing 76 n n C19 H17 6ND sing 77 n n # _atom_sites.entry_id 5JTY _atom_sites.fract_transf_matrix[1][1] 0.018325 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01115 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007668 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 2JK A 1 501 501 2JK 2JK . D 4 6ND B 1 601 502 6ND MP7 . E 5 GLU B 1 602 501 GLU GLU . F 6 HOH A 1 601 325 HOH HOH . F 6 HOH A 2 602 304 HOH HOH . F 6 HOH A 3 603 333 HOH HOH . F 6 HOH A 4 604 328 HOH HOH . F 6 HOH A 5 605 315 HOH HOH . F 6 HOH A 6 606 312 HOH HOH . F 6 HOH A 7 607 329 HOH HOH . F 6 HOH A 8 608 305 HOH HOH . F 6 HOH A 9 609 309 HOH HOH . F 6 HOH A 10 610 327 HOH HOH . F 6 HOH A 11 611 331 HOH HOH . F 6 HOH A 12 612 326 HOH HOH . F 6 HOH A 13 613 317 HOH HOH . F 6 HOH A 14 614 307 HOH HOH . F 6 HOH A 15 615 322 HOH HOH . F 6 HOH A 16 616 318 HOH HOH . F 6 HOH A 17 617 313 HOH HOH . F 6 HOH A 18 618 320 HOH HOH . F 6 HOH A 19 619 310 HOH HOH . F 6 HOH A 20 620 308 HOH HOH . F 6 HOH A 21 621 302 HOH HOH . F 6 HOH A 22 622 314 HOH HOH . F 6 HOH A 23 623 324 HOH HOH . F 6 HOH A 24 624 323 HOH HOH . F 6 HOH A 25 625 303 HOH HOH . F 6 HOH A 26 626 330 HOH HOH . F 6 HOH A 27 627 306 HOH HOH . F 6 HOH A 28 628 311 HOH HOH . F 6 HOH A 29 629 332 HOH HOH . F 6 HOH A 30 630 321 HOH HOH . F 6 HOH A 31 631 316 HOH HOH . F 6 HOH A 32 632 319 HOH HOH . G 6 HOH B 1 701 343 HOH HOH . G 6 HOH B 2 702 339 HOH HOH . G 6 HOH B 3 703 322 HOH HOH . G 6 HOH B 4 704 332 HOH HOH . G 6 HOH B 5 705 317 HOH HOH . G 6 HOH B 6 706 312 HOH HOH . G 6 HOH B 7 707 323 HOH HOH . G 6 HOH B 8 708 308 HOH HOH . G 6 HOH B 9 709 309 HOH HOH . G 6 HOH B 10 710 349 HOH HOH . G 6 HOH B 11 711 344 HOH HOH . G 6 HOH B 12 712 350 HOH HOH . G 6 HOH B 13 713 340 HOH HOH . G 6 HOH B 14 714 320 HOH HOH . G 6 HOH B 15 715 328 HOH HOH . G 6 HOH B 16 716 324 HOH HOH . G 6 HOH B 17 717 342 HOH HOH . G 6 HOH B 18 718 348 HOH HOH . G 6 HOH B 19 719 326 HOH HOH . G 6 HOH B 20 720 347 HOH HOH . G 6 HOH B 21 721 310 HOH HOH . G 6 HOH B 22 722 337 HOH HOH . G 6 HOH B 23 723 346 HOH HOH . G 6 HOH B 24 724 321 HOH HOH . G 6 HOH B 25 725 333 HOH HOH . G 6 HOH B 26 726 329 HOH HOH . G 6 HOH B 27 727 318 HOH HOH . G 6 HOH B 28 728 341 HOH HOH . G 6 HOH B 29 729 316 HOH HOH . G 6 HOH B 30 730 306 HOH HOH . G 6 HOH B 31 731 338 HOH HOH . G 6 HOH B 32 732 334 HOH HOH . G 6 HOH B 33 733 305 HOH HOH . G 6 HOH B 34 734 335 HOH HOH . G 6 HOH B 35 735 315 HOH HOH . G 6 HOH B 36 736 313 HOH HOH . G 6 HOH B 37 737 345 HOH HOH . G 6 HOH B 38 738 336 HOH HOH . G 6 HOH B 39 739 304 HOH HOH . G 6 HOH B 40 740 307 HOH HOH . G 6 HOH B 41 741 314 HOH HOH . G 6 HOH B 42 742 303 HOH HOH . G 6 HOH B 43 743 325 HOH HOH . G 6 HOH B 44 744 330 HOH HOH . G 6 HOH B 45 745 311 HOH HOH . G 6 HOH B 46 746 319 HOH HOH . G 6 HOH B 47 747 331 HOH HOH . G 6 HOH B 48 748 351 HOH HOH . G 6 HOH B 49 749 327 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 6ND . . . D 4 16.247 -5.74 -26.946 1 31.96 ? C10 6ND 601 B 1 HETATM 2 C C11 6ND . . . D 4 17.026 -5.555 -25.794 1 33.03 ? C11 6ND 601 B 1 HETATM 3 C C13 6ND . . . D 4 18.685 -6.938 -26.654 1 33.96 ? C13 6ND 601 B 1 HETATM 4 C C14 6ND . . . D 4 17.914 -7.132 -27.804 1 36.6 ? C14 6ND 601 B 1 HETATM 5 C C16 6ND . . . D 4 20.053 -7.632 -26.539 1 30.97 ? C16 6ND 601 B 1 HETATM 6 C C22 6ND . . . D 4 22.006 -12.524 -24.071 1 39.08 ? C22 6ND 601 B 1 HETATM 7 C C24 6ND . . . D 4 20.662 -10.947 -25.102 1 35.88 ? C24 6ND 601 B 1 HETATM 8 C C25 6ND . . . D 4 22.442 -13.877 -23.51 1 34.8 ? C25 6ND 601 B 1 HETATM 9 C C26 6ND . . . D 4 16.511 -4.66 -24.682 1 33.49 ? C26 6ND 601 B 1 HETATM 10 C C01 6ND . . . D 4 16.694 -10.415 -26.619 1 37.53 ? C01 6ND 601 B 1 HETATM 11 C C02 6ND . . . D 4 16.477 -9.578 -25.528 1 31.79 ? C02 6ND 601 B 1 HETATM 12 C C03 6ND . . . D 4 15.465 -8.629 -25.574 1 30.92 ? C03 6ND 601 B 1 HETATM 13 C C04 6ND . . . D 4 14.669 -8.515 -26.707 1 33.43 ? C04 6ND 601 B 1 HETATM 14 C C05 6ND . . . D 4 14.889 -9.35 -27.797 1 34.71 ? C05 6ND 601 B 1 HETATM 15 C C06 6ND . . . D 4 15.902 -10.304 -27.755 1 36.89 ? C06 6ND 601 B 1 HETATM 16 S S07 6ND . . . D 4 13.373 -7.282 -26.761 1 31.78 ? S07 6ND 601 B 1 HETATM 17 N N08 6ND . . . D 4 13.896 -5.967 -27.641 1 28.44 ? N08 6ND 601 B 1 HETATM 18 C C09 6ND . . . D 4 14.869 -5.059 -27.086 1 35.14 ? C09 6ND 601 B 1 HETATM 19 N N12 6ND . . . D 4 18.237 -6.149 -25.657 1 32.02 ? N12 6ND 601 B 1 HETATM 20 N N15 6ND . . . D 4 16.705 -6.531 -27.932 1 34.97 ? N15 6ND 601 B 1 HETATM 21 O O17 6ND . . . D 4 20.677 -7.922 -27.546 1 30.77 ? O17 6ND 601 B 1 HETATM 22 N N18 6ND . . . D 4 20.604 -7.952 -25.247 1 35.49 ? N18 6ND 601 B 1 HETATM 23 C C19 6ND . . . D 4 21.896 -8.595 -25.177 1 43.66 ? C19 6ND 601 B 1 HETATM 24 C C20 6ND . . . D 4 21.756 -10.082 -24.839 1 39 ? C20 6ND 601 B 1 HETATM 25 S S21 6ND . . . D 4 22.893 -11.084 -24.056 1 40.03 ? S21 6ND 601 B 1 HETATM 26 N N23 6ND . . . D 4 20.839 -12.244 -24.674 1 36.16 ? N23 6ND 601 B 1 HETATM 27 O O27 6ND . . . D 4 12.153 -7.818 -27.302 1 33.2 ? O27 6ND 601 B 1 HETATM 28 O O28 6ND . . . D 4 12.948 -6.908 -25.446 1 30.98 ? O28 6ND 601 B 1 HETATM 29 F F29 6ND . . . D 4 17.245 -9.691 -24.436 1 31.53 ? F29 6ND 601 B 1 HETATM 30 F F30 6ND . . . D 4 17.67 -11.328 -26.568 1 44.78 ? F30 6ND 601 B 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 269 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 30 #