data_5JTY # _model_server_result.job_id L7CLhwXbvazjZQ5FLHcYxQ _model_server_result.datetime_utc '2024-10-12 23:21:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5jty # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":602}' # _entry.id 5JTY # _exptl.entry_id 5JTY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 147.129 _entity.id 5 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 'GLUTAMIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5JTY _cell.length_a 54.569 _cell.length_b 89.684 _cell.length_c 130.415 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5JTY _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 28 A CYS 28 1_555 A SG CYS 62 A CYS 62 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 A SG CYS 44 A CYS 44 1_555 A SG CYS 63 A CYS 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf3 B SG CYS 29 B CYS 32 1_555 B SG CYS 55 B CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf4 B SG CYS 36 B CYS 39 1_555 B SG CYS 56 B CYS 59 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf5 B SG CYS 226 B CYS 229 1_555 B SG CYS 281 B CYS 284 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? # _chem_comp.formula 'C5 H9 N O4' _chem_comp.formula_weight 147.129 _chem_comp.id GLU _chem_comp.mon_nstd_flag y _chem_comp.name 'GLUTAMIC ACID' _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA GLU sing 179 n n N H GLU sing 180 n n N H2 GLU sing 181 n n CA C GLU sing 182 n n CA CB GLU sing 183 n n CA HA GLU sing 184 n n C O GLU doub 185 n n C OXT GLU sing 186 n n CB CG GLU sing 187 n n CB HB2 GLU sing 188 n n CB HB3 GLU sing 189 n n CG CD GLU sing 190 n n CG HG2 GLU sing 191 n n CG HG3 GLU sing 192 n n CD OE1 GLU doub 193 n n CD OE2 GLU sing 194 n n OE2 HE2 GLU sing 195 n n OXT HXT GLU sing 196 n n # _atom_sites.entry_id 5JTY _atom_sites.fract_transf_matrix[1][1] 0.018325 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01115 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007668 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 2JK A 1 501 501 2JK 2JK . D 4 6ND B 1 601 502 6ND MP7 . E 5 GLU B 1 602 501 GLU GLU . F 6 HOH A 1 601 325 HOH HOH . F 6 HOH A 2 602 304 HOH HOH . F 6 HOH A 3 603 333 HOH HOH . F 6 HOH A 4 604 328 HOH HOH . F 6 HOH A 5 605 315 HOH HOH . F 6 HOH A 6 606 312 HOH HOH . F 6 HOH A 7 607 329 HOH HOH . F 6 HOH A 8 608 305 HOH HOH . F 6 HOH A 9 609 309 HOH HOH . F 6 HOH A 10 610 327 HOH HOH . F 6 HOH A 11 611 331 HOH HOH . F 6 HOH A 12 612 326 HOH HOH . F 6 HOH A 13 613 317 HOH HOH . F 6 HOH A 14 614 307 HOH HOH . F 6 HOH A 15 615 322 HOH HOH . F 6 HOH A 16 616 318 HOH HOH . F 6 HOH A 17 617 313 HOH HOH . F 6 HOH A 18 618 320 HOH HOH . F 6 HOH A 19 619 310 HOH HOH . F 6 HOH A 20 620 308 HOH HOH . F 6 HOH A 21 621 302 HOH HOH . F 6 HOH A 22 622 314 HOH HOH . F 6 HOH A 23 623 324 HOH HOH . F 6 HOH A 24 624 323 HOH HOH . F 6 HOH A 25 625 303 HOH HOH . F 6 HOH A 26 626 330 HOH HOH . F 6 HOH A 27 627 306 HOH HOH . F 6 HOH A 28 628 311 HOH HOH . F 6 HOH A 29 629 332 HOH HOH . F 6 HOH A 30 630 321 HOH HOH . F 6 HOH A 31 631 316 HOH HOH . F 6 HOH A 32 632 319 HOH HOH . G 6 HOH B 1 701 343 HOH HOH . G 6 HOH B 2 702 339 HOH HOH . G 6 HOH B 3 703 322 HOH HOH . G 6 HOH B 4 704 332 HOH HOH . G 6 HOH B 5 705 317 HOH HOH . G 6 HOH B 6 706 312 HOH HOH . G 6 HOH B 7 707 323 HOH HOH . G 6 HOH B 8 708 308 HOH HOH . G 6 HOH B 9 709 309 HOH HOH . G 6 HOH B 10 710 349 HOH HOH . G 6 HOH B 11 711 344 HOH HOH . G 6 HOH B 12 712 350 HOH HOH . G 6 HOH B 13 713 340 HOH HOH . G 6 HOH B 14 714 320 HOH HOH . G 6 HOH B 15 715 328 HOH HOH . G 6 HOH B 16 716 324 HOH HOH . G 6 HOH B 17 717 342 HOH HOH . G 6 HOH B 18 718 348 HOH HOH . G 6 HOH B 19 719 326 HOH HOH . G 6 HOH B 20 720 347 HOH HOH . G 6 HOH B 21 721 310 HOH HOH . G 6 HOH B 22 722 337 HOH HOH . G 6 HOH B 23 723 346 HOH HOH . G 6 HOH B 24 724 321 HOH HOH . G 6 HOH B 25 725 333 HOH HOH . G 6 HOH B 26 726 329 HOH HOH . G 6 HOH B 27 727 318 HOH HOH . G 6 HOH B 28 728 341 HOH HOH . G 6 HOH B 29 729 316 HOH HOH . G 6 HOH B 30 730 306 HOH HOH . G 6 HOH B 31 731 338 HOH HOH . G 6 HOH B 32 732 334 HOH HOH . G 6 HOH B 33 733 305 HOH HOH . G 6 HOH B 34 734 335 HOH HOH . G 6 HOH B 35 735 315 HOH HOH . G 6 HOH B 36 736 313 HOH HOH . G 6 HOH B 37 737 345 HOH HOH . G 6 HOH B 38 738 336 HOH HOH . G 6 HOH B 39 739 304 HOH HOH . G 6 HOH B 40 740 307 HOH HOH . G 6 HOH B 41 741 314 HOH HOH . G 6 HOH B 42 742 303 HOH HOH . G 6 HOH B 43 743 325 HOH HOH . G 6 HOH B 44 744 330 HOH HOH . G 6 HOH B 45 745 311 HOH HOH . G 6 HOH B 46 746 319 HOH HOH . G 6 HOH B 47 747 331 HOH HOH . G 6 HOH B 48 748 351 HOH HOH . G 6 HOH B 49 749 327 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N GLU . . . E 5 17.706 -16.169 -12.423 1 30.46 ? N GLU 602 B 1 HETATM 2 C CA GLU . . . E 5 16.82 -16.75 -11.421 1 28.73 ? CA GLU 602 B 1 HETATM 3 C C GLU . . . E 5 15.907 -15.695 -10.81 1 30.27 ? C GLU 602 B 1 HETATM 4 O O GLU . . . E 5 16.154 -14.494 -10.926 1 31.78 ? O GLU 602 B 1 HETATM 5 C CB GLU . . . E 5 17.629 -17.439 -10.322 1 30.34 ? CB GLU 602 B 1 HETATM 6 C CG GLU . . . E 5 18.297 -18.732 -10.758 1 30.72 ? CG GLU 602 B 1 HETATM 7 C CD GLU . . . E 5 17.31 -19.729 -11.335 1 27.41 ? CD GLU 602 B 1 HETATM 8 O OE1 GLU . . . E 5 17.465 -20.107 -12.515 1 28.39 ? OE1 GLU 602 B 1 HETATM 9 O OE2 GLU . . . E 5 16.373 -20.13 -10.611 1 25.56 ? OE2 GLU 602 B 1 HETATM 10 O OXT GLU . . . E 5 14.9 -16.028 -10.186 1 27.87 ? OXT GLU 602 B 1 # _model_server_stats.io_time_ms 53 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 321 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 10 #