data_5JUG # _model_server_result.job_id QDHu680ywJ-sI-vxhfJK-g _model_server_result.datetime_utc '2025-08-15 00:22:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5jug # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":207}' # _entry.id 5JUG # _exptl.entry_id 5JUG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5JUG _cell.length_a 36.707 _cell.length_b 53.841 _cell.length_c 82.636 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5JUG _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 BMA BMA C1 O1 . O4 HO4 . sing 2 ? 2 3 2 BMA BMA C1 O1 . O4 HO4 . sing 3 ? 2 4 3 BMA BMA C1 O1 . O4 HO4 . sing 4 ? 2 5 4 BMA BMA C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B BMA 1 B 1 BMA B 1 BMA 2 n B BMA 2 B 2 BMA B 2 BMA 2 n B BMA 3 B 3 BMA B 3 BMA 2 n B BMA 4 B 4 BMA B 4 BMA 2 n B BMA 5 B 5 BMA B 5 BMA # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 3 A CYS 8 1_555 A SG CYS 9 A CYS 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? covale ? covale1 C O4 MAN . A MAN 202 1_555 B C1 BMA . B BMA 2 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.424 ? covale ? covale2 B O4 BMA . B BMA 1 1_555 B C1 BMA . B BMA 2 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.4 ? covale ? covale3 B O4 BMA . B BMA 2 1_555 B C1 BMA . B BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.403 ? covale ? covale4 B O4 BMA . B BMA 3 1_555 B C1 BMA . B BMA 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.412 ? covale ? covale5 B O4 BMA . B BMA 4 1_555 B C1 BMA . B BMA 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.411 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 153 n n C1 C2 GOL sing 154 n n C1 H11 GOL sing 155 n n C1 H12 GOL sing 156 n n O1 HO1 GOL sing 157 n n C2 O2 GOL sing 158 n n C2 C3 GOL sing 159 n n C2 H2 GOL sing 160 n n O2 HO2 GOL sing 161 n n C3 O3 GOL sing 162 n n C3 H31 GOL sing 163 n n C3 H32 GOL sing 164 n n O3 HO3 GOL sing 165 n n # _atom_sites.entry_id 5JUG _atom_sites.fract_transf_matrix[1][1] 0.027243 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018573 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012101 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MAN A 1 202 1 MAN MAN . D 4 GOL A 1 207 1 GOL GOL . E 5 CL A 1 208 1 CL CL . F 6 HOH A 1 301 134 HOH HOH . F 6 HOH A 2 302 250 HOH HOH . F 6 HOH A 3 303 69 HOH HOH . F 6 HOH A 4 304 123 HOH HOH . F 6 HOH A 5 305 13 HOH HOH . F 6 HOH A 6 306 192 HOH HOH . F 6 HOH A 7 307 153 HOH HOH . F 6 HOH A 8 308 207 HOH HOH . F 6 HOH A 9 309 253 HOH HOH . F 6 HOH A 10 310 139 HOH HOH . F 6 HOH A 11 311 244 HOH HOH . F 6 HOH A 12 312 215 HOH HOH . F 6 HOH A 13 313 116 HOH HOH . F 6 HOH A 14 314 132 HOH HOH . F 6 HOH A 15 315 187 HOH HOH . F 6 HOH A 16 316 65 HOH HOH . F 6 HOH A 17 317 37 HOH HOH . F 6 HOH A 18 318 52 HOH HOH . F 6 HOH A 19 319 142 HOH HOH . F 6 HOH A 20 320 26 HOH HOH . F 6 HOH A 21 321 15 HOH HOH . F 6 HOH A 22 322 229 HOH HOH . F 6 HOH A 23 323 157 HOH HOH . F 6 HOH A 24 324 214 HOH HOH . F 6 HOH A 25 325 124 HOH HOH . F 6 HOH A 26 326 147 HOH HOH . F 6 HOH A 27 327 39 HOH HOH . F 6 HOH A 28 328 255 HOH HOH . F 6 HOH A 29 329 209 HOH HOH . F 6 HOH A 30 330 252 HOH HOH . F 6 HOH A 31 331 21 HOH HOH . F 6 HOH A 32 332 54 HOH HOH . F 6 HOH A 33 333 14 HOH HOH . F 6 HOH A 34 334 177 HOH HOH . F 6 HOH A 35 335 89 HOH HOH . F 6 HOH A 36 336 141 HOH HOH . F 6 HOH A 37 337 10 HOH HOH . F 6 HOH A 38 338 104 HOH HOH . F 6 HOH A 39 339 16 HOH HOH . F 6 HOH A 40 340 164 HOH HOH . F 6 HOH A 41 341 78 HOH HOH . F 6 HOH A 42 342 82 HOH HOH . F 6 HOH A 43 343 7 HOH HOH . F 6 HOH A 44 344 188 HOH HOH . F 6 HOH A 45 345 233 HOH HOH . F 6 HOH A 46 346 76 HOH HOH . F 6 HOH A 47 347 102 HOH HOH . F 6 HOH A 48 348 12 HOH HOH . F 6 HOH A 49 349 3 HOH HOH . F 6 HOH A 50 350 33 HOH HOH . F 6 HOH A 51 351 180 HOH HOH . F 6 HOH A 52 352 130 HOH HOH . F 6 HOH A 53 353 60 HOH HOH . F 6 HOH A 54 354 70 HOH HOH . F 6 HOH A 55 355 103 HOH HOH . F 6 HOH A 56 356 23 HOH HOH . F 6 HOH A 57 357 24 HOH HOH . F 6 HOH A 58 358 94 HOH HOH . F 6 HOH A 59 359 114 HOH HOH . F 6 HOH A 60 360 118 HOH HOH . F 6 HOH A 61 361 18 HOH HOH . F 6 HOH A 62 362 136 HOH HOH . F 6 HOH A 63 363 77 HOH HOH . F 6 HOH A 64 364 6 HOH HOH . F 6 HOH A 65 365 19 HOH HOH . F 6 HOH A 66 366 63 HOH HOH . F 6 HOH A 67 367 46 HOH HOH . F 6 HOH A 68 368 81 HOH HOH . F 6 HOH A 69 369 32 HOH HOH . F 6 HOH A 70 370 235 HOH HOH . F 6 HOH A 71 371 4 HOH HOH . F 6 HOH A 72 372 122 HOH HOH . F 6 HOH A 73 373 80 HOH HOH . F 6 HOH A 74 374 110 HOH HOH . F 6 HOH A 75 375 55 HOH HOH . F 6 HOH A 76 376 238 HOH HOH . F 6 HOH A 77 377 223 HOH HOH . F 6 HOH A 78 378 91 HOH HOH . F 6 HOH A 79 379 49 HOH HOH . F 6 HOH A 80 380 71 HOH HOH . F 6 HOH A 81 381 92 HOH HOH . F 6 HOH A 82 382 93 HOH HOH . F 6 HOH A 83 383 75 HOH HOH . F 6 HOH A 84 384 20 HOH HOH . F 6 HOH A 85 385 31 HOH HOH . F 6 HOH A 86 386 105 HOH HOH . F 6 HOH A 87 387 129 HOH HOH . F 6 HOH A 88 388 30 HOH HOH . F 6 HOH A 89 389 189 HOH HOH . F 6 HOH A 90 390 213 HOH HOH . F 6 HOH A 91 391 8 HOH HOH . F 6 HOH A 92 392 29 HOH HOH . F 6 HOH A 93 393 138 HOH HOH . F 6 HOH A 94 394 218 HOH HOH . F 6 HOH A 95 395 126 HOH HOH . F 6 HOH A 96 396 158 HOH HOH . F 6 HOH A 97 397 57 HOH HOH . F 6 HOH A 98 398 128 HOH HOH . F 6 HOH A 99 399 193 HOH HOH . F 6 HOH A 100 400 150 HOH HOH . F 6 HOH A 101 401 148 HOH HOH . F 6 HOH A 102 402 195 HOH HOH . F 6 HOH A 103 403 64 HOH HOH . F 6 HOH A 104 404 111 HOH HOH . F 6 HOH A 105 405 53 HOH HOH . F 6 HOH A 106 406 59 HOH HOH . F 6 HOH A 107 407 47 HOH HOH . F 6 HOH A 108 408 42 HOH HOH . F 6 HOH A 109 409 121 HOH HOH . F 6 HOH A 110 410 143 HOH HOH . F 6 HOH A 111 411 9 HOH HOH . F 6 HOH A 112 412 2 HOH HOH . F 6 HOH A 113 413 41 HOH HOH . F 6 HOH A 114 414 125 HOH HOH . F 6 HOH A 115 415 67 HOH HOH . F 6 HOH A 116 416 11 HOH HOH . F 6 HOH A 117 417 174 HOH HOH . F 6 HOH A 118 418 5 HOH HOH . F 6 HOH A 119 419 17 HOH HOH . F 6 HOH A 120 420 175 HOH HOH . F 6 HOH A 121 421 155 HOH HOH . F 6 HOH A 122 422 181 HOH HOH . F 6 HOH A 123 423 241 HOH HOH . F 6 HOH A 124 424 257 HOH HOH . F 6 HOH A 125 425 140 HOH HOH . F 6 HOH A 126 426 228 HOH HOH . F 6 HOH A 127 427 25 HOH HOH . F 6 HOH A 128 428 84 HOH HOH . F 6 HOH A 129 429 131 HOH HOH . F 6 HOH A 130 430 62 HOH HOH . F 6 HOH A 131 431 197 HOH HOH . F 6 HOH A 132 432 251 HOH HOH . F 6 HOH A 133 433 115 HOH HOH . F 6 HOH A 134 434 79 HOH HOH . F 6 HOH A 135 435 112 HOH HOH . F 6 HOH A 136 436 45 HOH HOH . F 6 HOH A 137 437 254 HOH HOH . F 6 HOH A 138 438 96 HOH HOH . F 6 HOH A 139 439 36 HOH HOH . F 6 HOH A 140 440 68 HOH HOH . F 6 HOH A 141 441 231 HOH HOH . F 6 HOH A 142 442 221 HOH HOH . F 6 HOH A 143 443 101 HOH HOH . F 6 HOH A 144 444 87 HOH HOH . F 6 HOH A 145 445 58 HOH HOH . F 6 HOH A 146 446 22 HOH HOH . F 6 HOH A 147 447 83 HOH HOH . F 6 HOH A 148 448 40 HOH HOH . F 6 HOH A 149 449 34 HOH HOH . F 6 HOH A 150 450 73 HOH HOH . F 6 HOH A 151 451 90 HOH HOH . F 6 HOH A 152 452 85 HOH HOH . F 6 HOH A 153 453 163 HOH HOH . F 6 HOH A 154 454 186 HOH HOH . F 6 HOH A 155 455 156 HOH HOH . F 6 HOH A 156 456 51 HOH HOH . F 6 HOH A 157 457 43 HOH HOH . F 6 HOH A 158 458 167 HOH HOH . F 6 HOH A 159 459 248 HOH HOH . F 6 HOH A 160 460 74 HOH HOH . F 6 HOH A 161 461 224 HOH HOH . F 6 HOH A 162 462 100 HOH HOH . F 6 HOH A 163 463 86 HOH HOH . F 6 HOH A 164 464 144 HOH HOH . F 6 HOH A 165 465 38 HOH HOH . F 6 HOH A 166 466 212 HOH HOH . F 6 HOH A 167 467 256 HOH HOH . F 6 HOH A 168 468 166 HOH HOH . F 6 HOH A 169 469 127 HOH HOH . F 6 HOH A 170 470 190 HOH HOH . F 6 HOH A 171 471 211 HOH HOH . F 6 HOH A 172 472 117 HOH HOH . F 6 HOH A 173 473 240 HOH HOH . F 6 HOH A 174 474 149 HOH HOH . F 6 HOH A 175 475 168 HOH HOH . F 6 HOH A 176 476 135 HOH HOH . F 6 HOH A 177 477 194 HOH HOH . F 6 HOH A 178 478 107 HOH HOH . F 6 HOH A 179 479 95 HOH HOH . F 6 HOH A 180 480 161 HOH HOH . F 6 HOH A 181 481 44 HOH HOH . F 6 HOH A 182 482 202 HOH HOH . F 6 HOH A 183 483 199 HOH HOH . F 6 HOH A 184 484 247 HOH HOH . F 6 HOH A 185 485 172 HOH HOH . F 6 HOH A 186 486 72 HOH HOH . F 6 HOH A 187 487 232 HOH HOH . F 6 HOH A 188 488 173 HOH HOH . F 6 HOH A 189 489 245 HOH HOH . F 6 HOH A 190 490 205 HOH HOH . F 6 HOH A 191 491 200 HOH HOH . F 6 HOH A 192 492 160 HOH HOH . F 6 HOH A 193 493 133 HOH HOH . F 6 HOH A 194 494 108 HOH HOH . F 6 HOH A 195 495 56 HOH HOH . F 6 HOH A 196 496 66 HOH HOH . F 6 HOH A 197 497 170 HOH HOH . F 6 HOH A 198 498 106 HOH HOH . F 6 HOH A 199 499 119 HOH HOH . F 6 HOH A 200 500 182 HOH HOH . F 6 HOH A 201 501 176 HOH HOH . F 6 HOH A 202 502 183 HOH HOH . F 6 HOH A 203 503 203 HOH HOH . F 6 HOH A 204 504 98 HOH HOH . F 6 HOH A 205 505 169 HOH HOH . F 6 HOH A 206 506 222 HOH HOH . F 6 HOH A 207 507 217 HOH HOH . F 6 HOH A 208 508 99 HOH HOH . F 6 HOH A 209 509 237 HOH HOH . F 6 HOH A 210 510 151 HOH HOH . F 6 HOH A 211 511 120 HOH HOH . F 6 HOH A 212 512 27 HOH HOH . F 6 HOH A 213 513 236 HOH HOH . F 6 HOH A 214 514 239 HOH HOH . F 6 HOH A 215 515 179 HOH HOH . F 6 HOH A 216 516 146 HOH HOH . F 6 HOH A 217 517 35 HOH HOH . F 6 HOH A 218 518 145 HOH HOH . F 6 HOH A 219 519 243 HOH HOH . F 6 HOH A 220 520 88 HOH HOH . F 6 HOH A 221 521 185 HOH HOH . F 6 HOH A 222 522 28 HOH HOH . F 6 HOH A 223 523 198 HOH HOH . F 6 HOH A 224 524 97 HOH HOH . F 6 HOH A 225 525 201 HOH HOH . F 6 HOH A 226 526 178 HOH HOH . F 6 HOH A 227 527 204 HOH HOH . F 6 HOH A 228 528 246 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 4 -9.488 21.757 22.242 0.8 19.47 ? C1 GOL 207 A 1 HETATM 2 O O1 GOL . . . D 4 -9.41 20.496 22.92 0.8 25.4 ? O1 GOL 207 A 1 HETATM 3 C C2 GOL . . . D 4 -9.126 21.524 20.784 0.8 17.78 ? C2 GOL 207 A 1 HETATM 4 O O2 GOL . . . D 4 -10.105 20.637 20.195 0.8 13.97 ? O2 GOL 207 A 1 HETATM 5 C C3 GOL . . . D 4 -9.019 22.896 20.114 0.8 15.63 ? C3 GOL 207 A 1 HETATM 6 O O3 GOL . . . D 4 -8.581 22.869 18.746 0.8 10.49 ? O3 GOL 207 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 253 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #