data_5JUL
#
_model_server_result.job_id            0xZCD6x9LjEM1_ebunH4gg 
_model_server_result.datetime_utc      '2024-10-11 02:24:00' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5jul 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"AA","auth_seq_id":1501}' 
#
_entry.id    5JUL 
#
_exptl.entry_id    5JUL 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              491.182 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "2'-DEOXYADENOSINE 5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    16 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    hexadecameric 
_pdbx_struct_assembly.oligomeric_count      16 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 Q N N 
? 2 R N N 
? 2 S N N 
? 2 T N N 
? 2 U N N 
? 2 V N N 
? 2 W N N 
? 2 X N N 
? 2 Y N N 
? 2 Z N N 
? 2 AA N N 
? 2 BA N N 
? 2 CA N N 
? 2 DA N N 
? 2 EA N N 
? 2 FA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C ALA 250 A ALA 250 1_555 A N APK 251 A APK 251 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.268 ? 
covale ? covale2 A C APK 251 A APK 251 1_555 A N ALA 252 A ALA 252 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.374 ? 
covale ? covale3 B C ALA 250 B ALA 250 1_555 B N APK 251 B APK 251 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.268 ? 
covale ? covale4 B C APK 251 B APK 251 1_555 B N ALA 252 B ALA 252 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.374 ? 
covale ? covale5 C C ALA 250 C ALA 250 1_555 C N APK 251 C APK 251 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.268 ? 
covale ? covale6 C C APK 251 C APK 251 1_555 C N ALA 252 C ALA 252 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.374 ? 
covale ? covale7 D C ALA 250 D ALA 250 1_555 D N APK 251 D APK 251 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.268 ? 
covale ? covale8 D C APK 251 D APK 251 1_555 D N ALA 252 D ALA 252 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.374 ? 
covale ? covale9 E C ALA 250 E ALA 250 1_555 E N APK 251 E APK 251 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.268 ? 
covale ? covale10 E C APK 251 E APK 251 1_555 E N ALA 252 E ALA 252 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.375 ? 
covale ? covale11 F C ALA 250 F ALA 250 1_555 F N APK 251 F APK 251 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.268 ? 
covale ? covale12 F C APK 251 F APK 251 1_555 F N ALA 252 F ALA 252 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.373 ? 
covale ? covale13 G C ALA 250 G ALA 250 1_555 G N APK 251 G APK 251 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.269 ? 
covale ? covale14 G C APK 251 G APK 251 1_555 G N ALA 252 G ALA 252 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.374 ? 
covale ? covale15 H C ALA 250 H ALA 250 1_555 H N APK 251 H APK 251 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.267 ? 
covale ? covale16 H C APK 251 H APK 251 1_555 H N ALA 252 H ALA 252 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.374 ? 
covale ? covale17 I C ALA 250 I ALA 250 1_555 I N APK 251 I APK 251 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.267 ? 
covale ? covale18 I C APK 251 I APK 251 1_555 I N ALA 252 I ALA 252 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.374 ? 
covale ? covale19 J C ALA 250 J ALA 250 1_555 J N APK 251 J APK 251 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.268 ? 
covale ? covale20 J C APK 251 J APK 251 1_555 J N ALA 252 J ALA 252 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.374 ? 
covale ? covale21 K C ALA 250 K ALA 250 1_555 K N APK 251 K APK 251 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.268 ? 
covale ? covale22 K C APK 251 K APK 251 1_555 K N ALA 252 K ALA 252 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.375 ? 
covale ? covale23 L C ALA 250 L ALA 250 1_555 L N APK 251 L APK 251 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.268 ? 
covale ? covale24 L C APK 251 L APK 251 1_555 L N ALA 252 L ALA 252 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.374 ? 
covale ? covale25 M C ALA 250 M ALA 250 1_555 M N APK 251 M APK 251 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.268 ? 
covale ? covale26 M C APK 251 M APK 251 1_555 M N ALA 252 M ALA 252 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.374 ? 
covale ? covale27 N C ALA 250 N ALA 250 1_555 N N APK 251 N APK 251 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.268 ? 
covale ? covale28 N C APK 251 N APK 251 1_555 N N ALA 252 N ALA 252 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.374 ? 
covale ? covale29 O C ALA 250 O ALA 250 1_555 O N APK 251 O APK 251 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.268 ? 
covale ? covale30 O C APK 251 O APK 251 1_555 O N ALA 252 O ALA 252 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.375 ? 
covale ? covale31 P C ALA 250 P ALA 250 1_555 P N APK 251 P APK 251 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.269 ? 
covale ? covale32 P C APK 251 P APK 251 1_555 P N ALA 252 P ALA 252 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.374 ? 
#
_chem_comp.formula           'C10 H16 N5 O12 P3' 
_chem_comp.formula_weight    491.182 
_chem_comp.id                DTP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "2'-DEOXYADENOSINE 5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     5JUL 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
Q 2 DTP A 1 1501 3233 DTP DTP . 
R 2 DTP B 1 1501 3233 DTP DTP . 
S 2 DTP C 1 1501 3233 DTP DTP . 
T 2 DTP D 1 1501 3233 DTP DTP . 
U 2 DTP E 1 1501 3233 DTP DTP . 
V 2 DTP F 1 1501 3233 DTP DTP . 
W 2 DTP G 1 1501 3233 DTP DTP . 
X 2 DTP H 1 1501 3233 DTP DTP . 
Y 2 DTP I 1 1501 3233 DTP DTP . 
Z 2 DTP J 1 1501 3233 DTP DTP . 
AA 2 DTP K 1 1501 3233 DTP DTP . 
BA 2 DTP L 1 1501 3233 DTP DTP . 
CA 2 DTP M 1 1501 3233 DTP DTP . 
DA 2 DTP N 1 1501 3233 DTP DTP . 
EA 2 DTP O 1 1501 3233 DTP DTP . 
FA 2 DTP P 1 1501 3233 DTP DTP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG DTP . . . AA 2 168.086 202.512 258.204 1 50 ? PG DTP 1501 K 1 
HETATM 2 O O1G DTP . . . AA 2 169.276 203.373 257.922 1 50 ? O1G DTP 1501 K 1 
HETATM 3 O O2G DTP . . . AA 2 167.324 203.027 259.388 1 50 ? O2G DTP 1501 K 1 
HETATM 4 O O3G DTP . . . AA 2 168.56 201.112 258.47 1 50 ? O3G DTP 1501 K 1 
HETATM 5 P PB DTP . . . AA 2 167.637 201.475 255.881 1 50 ? PB DTP 1501 K 1 
HETATM 6 O O1B DTP . . . AA 2 167.139 201.687 254.478 1 50 ? O1B DTP 1501 K 1 
HETATM 7 O O2B DTP . . . AA 2 169.13 201.423 255.949 1 50 ? O2B DTP 1501 K 1 
HETATM 8 O O3B DTP . . . AA 2 167.19 202.531 256.927 1 50 ? O3B DTP 1501 K 1 
HETATM 9 P PA DTP . . . AA 2 167.594 198.792 255.828 1 50 ? PA DTP 1501 K 1 
HETATM 10 O O1A DTP . . . AA 2 166.7 198.459 254.689 1 50 ? O1A DTP 1501 K 1 
HETATM 11 O O2A DTP . . . AA 2 169.007 198.918 255.345 1 50 ? O2A DTP 1501 K 1 
HETATM 12 O O3A DTP . . . AA 2 167.091 200.134 256.425 1 50 ? O3A DTP 1501 K 1 
HETATM 13 O O5' DTP . . . AA 2 167.466 197.659 256.894 1 50 ? O5' DTP 1501 K 1 
HETATM 14 C C5' DTP . . . AA 2 167.926 196.411 256.483 1 50 ? C5' DTP 1501 K 1 
HETATM 15 C C4' DTP . . . AA 2 166.77 195.479 256.29 1 50 ? C4' DTP 1501 K 1 
HETATM 16 O O4' DTP . . . AA 2 165.764 196.037 255.802 1 50 ? O4' DTP 1501 K 1 
HETATM 17 C C3' DTP . . . AA 2 167.215 194.43 255.127 1 50 ? C3' DTP 1501 K 1 
HETATM 18 O O3' DTP . . . AA 2 168.149 193.458 255.737 1 50 ? O3' DTP 1501 K 1 
HETATM 19 C C2' DTP . . . AA 2 166.213 193.849 254.823 1 50 ? C2' DTP 1501 K 1 
HETATM 20 C C1' DTP . . . AA 2 165.107 194.892 255.105 1 50 ? C1' DTP 1501 K 1 
HETATM 21 N N9 DTP . . . AA 2 164.763 195.311 253.953 1 50 ? N9 DTP 1501 K 1 
HETATM 22 C C8 DTP . . . AA 2 164.914 196.536 253.476 1 50 ? C8 DTP 1501 K 1 
HETATM 23 N N7 DTP . . . AA 2 164.425 196.546 252.235 1 50 ? N7 DTP 1501 K 1 
HETATM 24 C C5 DTP . . . AA 2 163.992 195.314 251.966 1 50 ? C5 DTP 1501 K 1 
HETATM 25 C C6 DTP . . . AA 2 163.422 194.821 250.848 1 50 ? C6 DTP 1501 K 1 
HETATM 26 N N6 DTP . . . AA 2 163.088 195.387 249.61 1 50 ? N6 DTP 1501 K 1 
HETATM 27 N N1 DTP . . . AA 2 163.061 193.553 250.793 1 50 ? N1 DTP 1501 K 1 
HETATM 28 C C2 DTP . . . AA 2 163.271 192.768 251.873 1 50 ? C2 DTP 1501 K 1 
HETATM 29 N N3 DTP . . . AA 2 163.839 193.26 252.991 1 50 ? N3 DTP 1501 K 1 
HETATM 30 C C4 DTP . . . AA 2 164.2 194.547 253.02 1 50 ? C4 DTP 1501 K 1 
#
_model_server_stats.io_time_ms              239 
_model_server_stats.parse_time_ms           106 
_model_server_stats.create_model_time_ms    118 
_model_server_stats.query_time_ms           309 
_model_server_stats.encode_time_ms          20 
_model_server_stats.element_count           30 
#