data_5JUW # _model_server_result.job_id nauVlr-B8aRvP65HtqglQw _model_server_result.datetime_utc '2024-11-05 21:24:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5juw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"X","auth_seq_id":523}' # _entry.id 5JUW # _exptl.entry_id 5JUW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 408.432 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2~{S})-2-azanyl-4-[[(2~{S},3~{S},4~{R},5~{R})-5-(4-azanyl-5-cyano-pyrrolo[2,3-d]pyrimidin-7-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methylsulfanyl]butanoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5JUW _cell.length_a 153.258 _cell.length_b 153.258 _cell.length_c 50.723 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5JUW _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id X _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C16 H20 N6 O5 S' _chem_comp.formula_weight 408.432 _chem_comp.id 6NR _chem_comp.mon_nstd_flag . _chem_comp.name '(2~{S})-2-azanyl-4-[[(2~{S},3~{S},4~{R},5~{R})-5-(4-azanyl-5-cyano-pyrrolo[2,3-d]pyrimidin-7-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methylsulfanyl]butanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O2' C2' 6NR sing 1 n n NN CN 6NR trip 2 n n N6 C6 6NR sing 3 n n CN C7 6NR sing 4 n n C7 C5 6NR sing 5 n y C7 C8 6NR doub 6 n y C6 C5 6NR doub 7 n y C6 N1 6NR sing 8 n y C2' C1' 6NR sing 9 n n C2' C3' 6NR sing 10 n n C5 C4 6NR sing 11 n y C8 N9 6NR sing 12 n y N1 C2 6NR doub 13 n y C4 N9 6NR sing 14 n y C4 N3 6NR doub 15 n y N9 C1' 6NR sing 16 n n C2 N3 6NR sing 17 n y O3' C3' 6NR sing 18 n n C1' O4' 6NR sing 19 n n C3' C4' 6NR sing 20 n n O4' C4' 6NR sing 21 n n C4' C5' 6NR sing 22 n n C5' SD 6NR sing 23 n n SD CG 6NR sing 24 n n CB CG 6NR sing 25 n n CB CA 6NR sing 26 n n CA N 6NR sing 27 n n CA C 6NR sing 28 n n C OXT 6NR doub 29 n n C O 6NR sing 30 n n C8 H1 6NR sing 31 n n O H2 6NR sing 32 n n CA H3 6NR sing 33 n n N H4 6NR sing 34 n n N H5 6NR sing 35 n n CB H7 6NR sing 36 n n CB H8 6NR sing 37 n n CG H9 6NR sing 38 n n CG H10 6NR sing 39 n n C5' H11 6NR sing 40 n n C5' H12 6NR sing 41 n n C4' H13 6NR sing 42 n n C3' H14 6NR sing 43 n n O3' H15 6NR sing 44 n n C2' H16 6NR sing 45 n n O2' H17 6NR sing 46 n n C1' H18 6NR sing 47 n n C2 H19 6NR sing 48 n n N6 H20 6NR sing 49 n n N6 H21 6NR sing 50 n n # _atom_sites.entry_id 5JUW _atom_sites.fract_transf_matrix[1][1] 0.006525 _atom_sites.fract_transf_matrix[1][2] 0.003767 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007534 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019715 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 UNX A 1 501 1 UNX UNX . C 2 UNX A 1 502 2 UNX UNX . D 2 UNX A 1 503 3 UNX UNX . E 2 UNX A 1 504 4 UNX UNX . F 2 UNX A 1 505 5 UNX UNX . G 2 UNX A 1 506 6 UNX UNX . H 2 UNX A 1 507 7 UNX UNX . I 2 UNX A 1 508 8 UNX UNX . J 2 UNX A 1 509 9 UNX UNX . K 2 UNX A 1 510 10 UNX UNX . L 2 UNX A 1 511 11 UNX UNX . M 2 UNX A 1 512 12 UNX UNX . N 2 UNX A 1 513 13 UNX UNX . O 2 UNX A 1 514 14 UNX UNX . P 2 UNX A 1 515 15 UNX UNX . Q 2 UNX A 1 516 16 UNX UNX . R 2 UNX A 1 517 17 UNX UNX . S 2 UNX A 1 518 18 UNX UNX . T 2 UNX A 1 519 19 UNX UNX . U 2 UNX A 1 520 20 UNX UNX . V 2 UNX A 1 521 21 UNX UNX . W 2 UNX A 1 522 22 UNX UNX . X 3 6NR A 1 523 1 6NR XXX . Y 4 HOH A 1 601 5 HOH HOH . Y 4 HOH A 2 602 15 HOH HOH . Y 4 HOH A 3 603 7 HOH HOH . Y 4 HOH A 4 604 70 HOH HOH . Y 4 HOH A 5 605 34 HOH HOH . Y 4 HOH A 6 606 16 HOH HOH . Y 4 HOH A 7 607 30 HOH HOH . Y 4 HOH A 8 608 8 HOH HOH . Y 4 HOH A 9 609 2 HOH HOH . Y 4 HOH A 10 610 74 HOH HOH . Y 4 HOH A 11 611 28 HOH HOH . Y 4 HOH A 12 612 55 HOH HOH . Y 4 HOH A 13 613 39 HOH HOH . Y 4 HOH A 14 614 14 HOH HOH . Y 4 HOH A 15 615 41 HOH HOH . Y 4 HOH A 16 616 9 HOH HOH . Y 4 HOH A 17 617 32 HOH HOH . Y 4 HOH A 18 618 13 HOH HOH . Y 4 HOH A 19 619 35 HOH HOH . Y 4 HOH A 20 620 6 HOH HOH . Y 4 HOH A 21 621 75 HOH HOH . Y 4 HOH A 22 622 62 HOH HOH . Y 4 HOH A 23 623 3 HOH HOH . Y 4 HOH A 24 624 38 HOH HOH . Y 4 HOH A 25 625 43 HOH HOH . Y 4 HOH A 26 626 65 HOH HOH . Y 4 HOH A 27 627 58 HOH HOH . Y 4 HOH A 28 628 4 HOH HOH . Y 4 HOH A 29 629 23 HOH HOH . Y 4 HOH A 30 630 71 HOH HOH . Y 4 HOH A 31 631 57 HOH HOH . Y 4 HOH A 32 632 45 HOH HOH . Y 4 HOH A 33 633 37 HOH HOH . Y 4 HOH A 34 634 50 HOH HOH . Y 4 HOH A 35 635 29 HOH HOH . Y 4 HOH A 36 636 48 HOH HOH . Y 4 HOH A 37 637 21 HOH HOH . Y 4 HOH A 38 638 69 HOH HOH . Y 4 HOH A 39 639 1 HOH HOH . Y 4 HOH A 40 640 22 HOH HOH . Y 4 HOH A 41 641 56 HOH HOH . Y 4 HOH A 42 642 44 HOH HOH . Y 4 HOH A 43 643 36 HOH HOH . Y 4 HOH A 44 644 12 HOH HOH . Y 4 HOH A 45 645 49 HOH HOH . Y 4 HOH A 46 646 66 HOH HOH . Y 4 HOH A 47 647 52 HOH HOH . Y 4 HOH A 48 648 24 HOH HOH . Y 4 HOH A 49 649 73 HOH HOH . Y 4 HOH A 50 650 67 HOH HOH . Y 4 HOH A 51 651 10 HOH HOH . Y 4 HOH A 52 652 59 HOH HOH . Y 4 HOH A 53 653 46 HOH HOH . Y 4 HOH A 54 654 53 HOH HOH . Y 4 HOH A 55 655 72 HOH HOH . Y 4 HOH A 56 656 26 HOH HOH . Y 4 HOH A 57 657 18 HOH HOH . Y 4 HOH A 58 658 63 HOH HOH . Y 4 HOH A 59 659 60 HOH HOH . Y 4 HOH A 60 660 54 HOH HOH . Y 4 HOH A 61 661 40 HOH HOH . Y 4 HOH A 62 662 61 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 6NR . . . X 3 18.14 61.61 -9.988 1 34.87 ? C4 6NR 523 A 1 HETATM 2 C C5 6NR . . . X 3 16.851 62.004 -10.414 1 38.3 ? C5 6NR 523 A 1 HETATM 3 C C6 6NR . . . X 3 15.883 60.976 -10.526 1 38.38 ? C6 6NR 523 A 1 HETATM 4 N N1 6NR . . . X 3 16.235 59.719 -10.183 1 37.96 ? N1 6NR 523 A 1 HETATM 5 C C7 6NR . . . X 3 16.903 63.425 -10.577 1 39.15 ? C7 6NR 523 A 1 HETATM 6 C C8 6NR . . . X 3 18.186 63.817 -10.279 1 35.81 ? C8 6NR 523 A 1 HETATM 7 N N3 6NR . . . X 3 18.51 60.361 -9.679 1 36.93 ? N3 6NR 523 A 1 HETATM 8 O OXT 6NR . . . X 3 26.686 63.49 -2.607 1 35.5 ? OXT 6NR 523 A 1 HETATM 9 C C 6NR . . . X 3 25.482 63.399 -2.724 1 32.44 ? C 6NR 523 A 1 HETATM 10 O O 6NR . . . X 3 24.634 64.058 -2.016 1 32.43 ? O 6NR 523 A 1 HETATM 11 C CA 6NR . . . X 3 24.871 62.443 -3.78 1 31.85 ? CA 6NR 523 A 1 HETATM 12 N N 6NR . . . X 3 23.575 61.921 -3.3 1 32.54 ? N 6NR 523 A 1 HETATM 13 C CB 6NR . . . X 3 24.715 63.161 -5.153 1 30.8 ? CB 6NR 523 A 1 HETATM 14 C CG 6NR . . . X 3 23.786 64.371 -5.128 1 32.56 ? CG 6NR 523 A 1 HETATM 15 S SD 6NR . . . X 3 23.72 65.171 -6.766 1 33.3 ? SD 6NR 523 A 1 HETATM 16 C C5' 6NR . . . X 3 21.983 65.001 -7.274 1 33.31 ? C5' 6NR 523 A 1 HETATM 17 C C4' 6NR . . . X 3 21.864 63.725 -8.084 1 31.33 ? C4' 6NR 523 A 1 HETATM 18 C C3' 6NR . . . X 3 22.486 63.74 -9.495 1 32.7 ? C3' 6NR 523 A 1 HETATM 19 O O3' 6NR . . . X 3 23.429 62.68 -9.64 1 28.41 ? O3' 6NR 523 A 1 HETATM 20 C C2' 6NR . . . X 3 21.273 63.529 -10.426 1 33.06 ? C2' 6NR 523 A 1 HETATM 21 O O2' 6NR . . . X 3 21.604 62.762 -11.569 1 32.85 ? O2' 6NR 523 A 1 HETATM 22 O O4' 6NR . . . X 3 20.459 63.422 -8.267 1 33.3 ? O4' 6NR 523 A 1 HETATM 23 C C1' 6NR . . . X 3 20.34 62.762 -9.507 1 33.16 ? C1' 6NR 523 A 1 HETATM 24 N N9 6NR . . . X 3 18.937 62.729 -9.914 1 35.2 ? N9 6NR 523 A 1 HETATM 25 C C2 6NR . . . X 3 17.496 59.493 -9.792 1 42.78 ? C2 6NR 523 A 1 HETATM 26 C CN 6NR . . . X 3 15.793 64.284 -10.87 1 42.65 ? CN 6NR 523 A 1 HETATM 27 N NN 6NR . . . X 3 14.88 64.931 -11.095 1 40.38 ? NN 6NR 523 A 1 HETATM 28 N N6 6NR . . . X 3 14.661 61.174 -11.022 1 38.7 ? N6 6NR 523 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 28 #