data_5JUY
#
_model_server_result.job_id            tDky4loVD7UTQBqC4M0M6w 
_model_server_result.datetime_utc      '2024-12-26 11:59:26' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5juy 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"T","auth_seq_id":1301}' 
#
_entry.id    5JUY 
#
_exptl.entry_id    5JUY 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              491.182 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "2'-DEOXYADENOSINE 5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    7 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    octadecameric 
_pdbx_struct_assembly.oligomeric_count      18 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 S N N 
? 4 T N N 
? 4 U N N 
? 4 V N N 
? 4 W N N 
? 4 X N N 
? 4 Y N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 633 A CYS 633 1_555 A SG CYS 663 A CYS 663 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf2 A SG CYS 675 A CYS 675 1_555 A SG CYS 705 A CYS 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf3 A SG CYS 704 A CYS 704 1_555 A SG CYS 749 A CYS 749 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf4 A SG CYS 761 A CYS 761 1_555 A SG CYS 804 A CYS 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf5 A SG CYS 803 A CYS 803 1_555 A SG CYS 846 A CYS 846 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf6 B SG CYS 633 B CYS 633 1_555 B SG CYS 663 B CYS 663 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf7 B SG CYS 675 B CYS 675 1_555 B SG CYS 705 B CYS 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf8 B SG CYS 704 B CYS 704 1_555 B SG CYS 749 B CYS 749 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf9 B SG CYS 761 B CYS 761 1_555 B SG CYS 804 B CYS 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf10 B SG CYS 803 B CYS 803 1_555 B SG CYS 846 B CYS 846 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf11 C SG CYS 633 C CYS 633 1_555 C SG CYS 663 C CYS 663 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf12 C SG CYS 675 C CYS 675 1_555 C SG CYS 705 C CYS 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf13 C SG CYS 704 C CYS 704 1_555 C SG CYS 749 C CYS 749 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf14 C SG CYS 761 C CYS 761 1_555 C SG CYS 804 C CYS 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf15 C SG CYS 803 C CYS 803 1_555 C SG CYS 846 C CYS 846 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf16 D SG CYS 633 D CYS 633 1_555 D SG CYS 663 D CYS 663 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf17 D SG CYS 675 D CYS 675 1_555 D SG CYS 705 D CYS 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf18 D SG CYS 704 D CYS 704 1_555 D SG CYS 749 D CYS 749 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf19 D SG CYS 761 D CYS 761 1_555 D SG CYS 804 D CYS 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf20 D SG CYS 803 D CYS 803 1_555 D SG CYS 846 D CYS 846 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf21 E SG CYS 633 E CYS 633 1_555 E SG CYS 663 E CYS 663 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf22 E SG CYS 675 E CYS 675 1_555 E SG CYS 705 E CYS 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf23 E SG CYS 704 E CYS 704 1_555 E SG CYS 749 E CYS 749 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf24 E SG CYS 761 E CYS 761 1_555 E SG CYS 804 E CYS 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf25 E SG CYS 803 E CYS 803 1_555 E SG CYS 846 E CYS 846 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf26 F SG CYS 633 F CYS 633 1_555 F SG CYS 663 F CYS 663 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf27 F SG CYS 675 F CYS 675 1_555 F SG CYS 705 F CYS 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf28 F SG CYS 704 F CYS 704 1_555 F SG CYS 749 F CYS 749 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf29 F SG CYS 761 F CYS 761 1_555 F SG CYS 804 F CYS 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf30 F SG CYS 803 F CYS 803 1_555 F SG CYS 846 F CYS 846 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf31 G SG CYS 633 G CYS 633 1_555 G SG CYS 663 G CYS 663 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf32 G SG CYS 675 G CYS 675 1_555 G SG CYS 705 G CYS 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf33 G SG CYS 704 G CYS 704 1_555 G SG CYS 749 G CYS 749 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf34 G SG CYS 761 G CYS 761 1_555 G SG CYS 804 G CYS 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf35 G SG CYS 803 G CYS 803 1_555 G SG CYS 846 G CYS 846 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
#
_chem_comp.formula           'C10 H16 N5 O12 P3' 
_chem_comp.formula_weight    491.182 
_chem_comp.id                DTP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "2'-DEOXYADENOSINE 5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G DTP doub 83 n n 
PG O2G DTP sing 84 n n 
PG O3G DTP sing 85 n n 
PG O3B DTP sing 86 n n 
O2G HOG2 DTP sing 87 n n 
O3G HOG3 DTP sing 88 n n 
PB O1B DTP doub 89 n n 
PB O2B DTP sing 90 n n 
PB O3B DTP sing 91 n n 
PB O3A DTP sing 92 n n 
O2B HOB2 DTP sing 93 n n 
PA O1A DTP doub 94 n n 
PA O2A DTP sing 95 n n 
PA O3A DTP sing 96 n n 
PA O5' DTP sing 97 n n 
O2A HOA2 DTP sing 98 n n 
O5' C5' DTP sing 99 n n 
C5' C4' DTP sing 100 n n 
C5' "H5'1" DTP sing 101 n n 
C5' "H5'2" DTP sing 102 n n 
C4' O4' DTP sing 103 n n 
C4' C3' DTP sing 104 n n 
C4' H4' DTP sing 105 n n 
O4' C1' DTP sing 106 n n 
C3' O3' DTP sing 107 n n 
C3' C2' DTP sing 108 n n 
C3' H3' DTP sing 109 n n 
O3' HO3' DTP sing 110 n n 
C2' C1' DTP sing 111 n n 
C2' "H2'1" DTP sing 112 n n 
C2' "H2'2" DTP sing 113 n n 
C1' N9 DTP sing 114 n n 
C1' H1' DTP sing 115 n n 
N9 C8 DTP sing 116 n y 
N9 C4 DTP sing 117 n y 
C8 N7 DTP doub 118 n y 
C8 H8 DTP sing 119 n n 
N7 C5 DTP sing 120 n y 
C5 C6 DTP sing 121 n y 
C5 C4 DTP doub 122 n y 
C6 N6 DTP sing 123 n n 
C6 N1 DTP doub 124 n y 
N6 HN61 DTP sing 125 n n 
N6 HN62 DTP sing 126 n n 
N1 C2 DTP sing 127 n y 
C2 N3 DTP doub 128 n y 
C2 H2 DTP sing 129 n n 
N3 C4 DTP sing 130 n y 
#
_atom_sites.entry_id                     5JUY 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
S 4 DTP A 1 1301 3233 DTP DTP . 
T 4 DTP B 1 1301 3233 DTP DTP . 
U 4 DTP C 1 1301 3233 DTP DTP . 
V 4 DTP D 1 1301 3233 DTP DTP . 
W 4 DTP E 1 1301 3233 DTP DTP . 
X 4 DTP F 1 1301 3233 DTP DTP . 
Y 4 DTP G 1 1301 3233 DTP DTP . 
Z 5 HEC H 1 500 500 HEC HEM . 
AA 5 HEC I 1 500 500 HEC HEM . 
BA 5 HEC J 1 500 500 HEC HEM . 
CA 5 HEC K 1 500 500 HEC HEM . 
DA 5 HEC L 1 500 500 HEC HEM . 
EA 5 HEC M 1 500 500 HEC HEM . 
FA 5 HEC N 1 500 500 HEC HEM . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG DTP . . . T 4 246.434 184.723 215.632 1 50 ? PG DTP 1301 B 1 
HETATM 2 O O1G DTP . . . T 4 245.488 185.458 214.723 1 50 ? O1G DTP 1301 B 1 
HETATM 3 O O2G DTP . . . T 4 245.671 183.796 216.531 1 50 ? O2G DTP 1301 B 1 
HETATM 4 O O3G DTP . . . T 4 247.22 185.698 216.453 1 50 ? O3G DTP 1301 B 1 
HETATM 5 P PB DTP . . . T 4 248.078 184.668 213.532 1 50 ? PB DTP 1301 B 1 
HETATM 6 O O1B DTP . . . T 4 247.42 184.21 212.27 1 50 ? O1B DTP 1301 B 1 
HETATM 7 O O2B DTP . . . T 4 247.812 186.136 213.687 1 50 ? O2B DTP 1301 B 1 
HETATM 8 O O3B DTP . . . T 4 247.462 183.926 214.761 1 50 ? O3B DTP 1301 B 1 
HETATM 9 P PA DTP . . . T 4 250.295 184.947 212.094 1 50 ? PA DTP 1301 B 1 
HETATM 10 O O1A DTP . . . T 4 249.892 184.052 210.961 1 50 ? O1A DTP 1301 B 1 
HETATM 11 O O2A DTP . . . T 4 249.789 186.331 211.83 1 50 ? O2A DTP 1301 B 1 
HETATM 12 O O3A DTP . . . T 4 249.622 184.437 213.411 1 50 ? O3A DTP 1301 B 1 
HETATM 13 O O5' DTP . . . T 4 251.859 185.01 212.209 1 50 ? O5' DTP 1301 B 1 
HETATM 14 C C5' DTP . . . T 4 252.446 186.28 212.14 1 50 ? C5' DTP 1301 B 1 
HETATM 15 C C4' DTP . . . T 4 253.877 186.132 212.551 1 50 ? C4' DTP 1301 B 1 
HETATM 16 O O4' DTP . . . T 4 254.206 184.919 212.436 1 50 ? O4' DTP 1301 B 1 
HETATM 17 C C3' DTP . . . T 4 254.809 186.989 211.515 1 50 ? C3' DTP 1301 B 1 
HETATM 18 O O3' DTP . . . T 4 255.109 188.317 212.111 1 50 ? O3' DTP 1301 B 1 
HETATM 19 C C2' DTP . . . T 4 255.833 186.352 211.396 1 50 ? C2' DTP 1301 B 1 
HETATM 20 C C1' DTP . . . T 4 255.38 184.863 211.515 1 50 ? C1' DTP 1301 B 1 
HETATM 21 N N9 DTP . . . T 4 255.02 184.407 210.345 1 50 ? N9 DTP 1301 B 1 
HETATM 22 C C8 DTP . . . T 4 253.809 184.014 209.912 1 50 ? C8 DTP 1301 B 1 
HETATM 23 N N7 DTP . . . T 4 253.927 183.619 208.629 1 50 ? N7 DTP 1301 B 1 
HETATM 24 C C5 DTP . . . T 4 255.219 183.761 208.275 1 50 ? C5 DTP 1301 B 1 
HETATM 25 C C6 DTP . . . T 4 255.864 183.508 207.097 1 50 ? C6 DTP 1301 B 1 
HETATM 26 N N6 DTP . . . T 4 255.453 183.012 205.842 1 50 ? N6 DTP 1301 B 1 
HETATM 27 N N1 DTP . . . T 4 257.173 183.737 206.997 1 50 ? N1 DTP 1301 B 1 
HETATM 28 C C2 DTP . . . T 4 257.858 184.23 208.06 1 50 ? C2 DTP 1301 B 1 
HETATM 29 N N3 DTP . . . T 4 257.213 184.483 209.226 1 50 ? N3 DTP 1301 B 1 
HETATM 30 C C4 DTP . . . T 4 255.891 184.241 209.327 1 50 ? C4 DTP 1301 B 1 
#
_model_server_stats.io_time_ms              29 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    62 
_model_server_stats.query_time_ms           519 
_model_server_stats.encode_time_ms          39 
_model_server_stats.element_count           30 
#