data_5JUY # _model_server_result.job_id yJWFsKK7JcPe9HsUMB3WAA _model_server_result.datetime_utc '2024-12-26 11:59:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5juy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"BA","auth_seq_id":500}' # _entry.id 5JUY # _exptl.entry_id 5JUY _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 618.503 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'HEME C' _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details octadecameric _pdbx_struct_assembly.oligomeric_count 18 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 Z N N ? 5 AA N N ? 5 BA N N ? 5 CA N N ? 5 DA N N ? 5 EA N N ? 5 FA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 633 A CYS 633 1_555 A SG CYS 663 A CYS 663 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf2 A SG CYS 675 A CYS 675 1_555 A SG CYS 705 A CYS 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf3 A SG CYS 704 A CYS 704 1_555 A SG CYS 749 A CYS 749 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf4 A SG CYS 761 A CYS 761 1_555 A SG CYS 804 A CYS 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf5 A SG CYS 803 A CYS 803 1_555 A SG CYS 846 A CYS 846 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf6 B SG CYS 633 B CYS 633 1_555 B SG CYS 663 B CYS 663 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf7 B SG CYS 675 B CYS 675 1_555 B SG CYS 705 B CYS 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf8 B SG CYS 704 B CYS 704 1_555 B SG CYS 749 B CYS 749 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf9 B SG CYS 761 B CYS 761 1_555 B SG CYS 804 B CYS 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf10 B SG CYS 803 B CYS 803 1_555 B SG CYS 846 B CYS 846 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf11 C SG CYS 633 C CYS 633 1_555 C SG CYS 663 C CYS 663 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf12 C SG CYS 675 C CYS 675 1_555 C SG CYS 705 C CYS 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf13 C SG CYS 704 C CYS 704 1_555 C SG CYS 749 C CYS 749 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf14 C SG CYS 761 C CYS 761 1_555 C SG CYS 804 C CYS 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf15 C SG CYS 803 C CYS 803 1_555 C SG CYS 846 C CYS 846 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf16 D SG CYS 633 D CYS 633 1_555 D SG CYS 663 D CYS 663 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf17 D SG CYS 675 D CYS 675 1_555 D SG CYS 705 D CYS 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf18 D SG CYS 704 D CYS 704 1_555 D SG CYS 749 D CYS 749 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf19 D SG CYS 761 D CYS 761 1_555 D SG CYS 804 D CYS 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf20 D SG CYS 803 D CYS 803 1_555 D SG CYS 846 D CYS 846 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf21 E SG CYS 633 E CYS 633 1_555 E SG CYS 663 E CYS 663 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf22 E SG CYS 675 E CYS 675 1_555 E SG CYS 705 E CYS 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf23 E SG CYS 704 E CYS 704 1_555 E SG CYS 749 E CYS 749 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf24 E SG CYS 761 E CYS 761 1_555 E SG CYS 804 E CYS 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf25 E SG CYS 803 E CYS 803 1_555 E SG CYS 846 E CYS 846 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf26 F SG CYS 633 F CYS 633 1_555 F SG CYS 663 F CYS 663 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf27 F SG CYS 675 F CYS 675 1_555 F SG CYS 705 F CYS 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf28 F SG CYS 704 F CYS 704 1_555 F SG CYS 749 F CYS 749 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf29 F SG CYS 761 F CYS 761 1_555 F SG CYS 804 F CYS 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf30 F SG CYS 803 F CYS 803 1_555 F SG CYS 846 F CYS 846 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf31 G SG CYS 633 G CYS 633 1_555 G SG CYS 663 G CYS 663 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf32 G SG CYS 675 G CYS 675 1_555 G SG CYS 705 G CYS 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf33 G SG CYS 704 G CYS 704 1_555 G SG CYS 749 G CYS 749 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf34 G SG CYS 761 G CYS 761 1_555 G SG CYS 804 G CYS 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf35 G SG CYS 803 G CYS 803 1_555 G SG CYS 846 G CYS 846 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? # _chem_comp.formula 'C34 H34 Fe N4 O4' _chem_comp.formula_weight 618.503 _chem_comp.id HEC _chem_comp.mon_nstd_flag . _chem_comp.name 'HEME C' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FE NA HEC sing 177 n n FE NB HEC sing 178 n n FE NC HEC sing 179 n n FE ND HEC sing 180 n n CHA C1A HEC doub 181 n n CHA C4D HEC sing 182 n n CHA HHA HEC sing 183 n n CHB C4A HEC doub 184 n n CHB C1B HEC sing 185 n n CHB HHB HEC sing 186 n n CHC C4B HEC doub 187 n n CHC C1C HEC sing 188 n n CHC HHC HEC sing 189 n n CHD C4C HEC doub 190 n n CHD C1D HEC sing 191 n n CHD HHD HEC sing 192 n n NA C1A HEC sing 193 n y NA C4A HEC sing 194 n y C1A C2A HEC sing 195 n y C2A C3A HEC doub 196 n y C2A CAA HEC sing 197 n n C3A C4A HEC sing 198 n y C3A CMA HEC sing 199 n n CMA HMA1 HEC sing 200 n n CMA HMA2 HEC sing 201 n n CMA HMA3 HEC sing 202 n n CAA CBA HEC sing 203 n n CAA HAA1 HEC sing 204 n n CAA HAA2 HEC sing 205 n n CBA CGA HEC sing 206 n n CBA HBA1 HEC sing 207 n n CBA HBA2 HEC sing 208 n n CGA O1A HEC doub 209 n n CGA O2A HEC sing 210 n n O2A H2A HEC sing 211 n n NB C1B HEC sing 212 n y NB C4B HEC sing 213 n y C1B C2B HEC doub 214 n y C2B C3B HEC sing 215 n y C2B CMB HEC sing 216 n n C3B C4B HEC sing 217 n y C3B CAB HEC doub 218 e n CMB HMB1 HEC sing 219 n n CMB HMB2 HEC sing 220 n n CMB HMB3 HEC sing 221 n n CAB CBB HEC sing 222 n n CAB HAB HEC sing 223 n n CBB HBB1 HEC sing 224 n n CBB HBB2 HEC sing 225 n n CBB HBB3 HEC sing 226 n n NC C1C HEC sing 227 n y NC C4C HEC sing 228 n y C1C C2C HEC doub 229 n y C2C C3C HEC sing 230 n y C2C CMC HEC sing 231 n n C3C C4C HEC sing 232 n y C3C CAC HEC doub 233 e n CMC HMC1 HEC sing 234 n n CMC HMC2 HEC sing 235 n n CMC HMC3 HEC sing 236 n n CAC CBC HEC sing 237 n n CAC HAC HEC sing 238 n n CBC HBC1 HEC sing 239 n n CBC HBC2 HEC sing 240 n n CBC HBC3 HEC sing 241 n n ND C1D HEC sing 242 n y ND C4D HEC sing 243 n y C1D C2D HEC doub 244 n y C2D C3D HEC sing 245 n y C2D CMD HEC sing 246 n n C3D C4D HEC doub 247 n y C3D CAD HEC sing 248 n n CMD HMD1 HEC sing 249 n n CMD HMD2 HEC sing 250 n n CMD HMD3 HEC sing 251 n n CAD CBD HEC sing 252 n n CAD HAD1 HEC sing 253 n n CAD HAD2 HEC sing 254 n n CBD CGD HEC sing 255 n n CBD HBD1 HEC sing 256 n n CBD HBD2 HEC sing 257 n n CGD O1D HEC doub 258 n n CGD O2D HEC sing 259 n n O2D H2D HEC sing 260 n n # _atom_sites.entry_id 5JUY _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code S 4 DTP A 1 1301 3233 DTP DTP . T 4 DTP B 1 1301 3233 DTP DTP . U 4 DTP C 1 1301 3233 DTP DTP . V 4 DTP D 1 1301 3233 DTP DTP . W 4 DTP E 1 1301 3233 DTP DTP . X 4 DTP F 1 1301 3233 DTP DTP . Y 4 DTP G 1 1301 3233 DTP DTP . Z 5 HEC H 1 500 500 HEC HEM . AA 5 HEC I 1 500 500 HEC HEM . BA 5 HEC J 1 500 500 HEC HEM . CA 5 HEC K 1 500 500 HEC HEM . DA 5 HEC L 1 500 500 HEC HEM . EA 5 HEC M 1 500 500 HEC HEM . FA 5 HEC N 1 500 500 HEC HEM . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE HEC . . . BA 5 334.128 212.29 211.411 1 50 ? FE HEC 500 J 1 HETATM 2 C CHA HEC . . . BA 5 336.55 211.303 213.615 1 50 ? CHA HEC 500 J 1 HETATM 3 C CHB HEC . . . BA 5 335.397 210.196 209.062 1 50 ? CHB HEC 500 J 1 HETATM 4 C CHC HEC . . . BA 5 331.428 212.942 209.369 1 50 ? CHC HEC 500 J 1 HETATM 5 C CHD HEC . . . BA 5 333.4 215.044 213.243 1 50 ? CHD HEC 500 J 1 HETATM 6 N NA HEC . . . BA 5 335.745 211.028 211.328 1 50 ? NA HEC 500 J 1 HETATM 7 C C1A HEC . . . BA 5 336.521 210.654 212.405 1 50 ? C1A HEC 500 J 1 HETATM 8 C C2A HEC . . . BA 5 337.277 209.477 212.025 1 50 ? C2A HEC 500 J 1 HETATM 9 C C3A HEC . . . BA 5 336.955 209.17 210.763 1 50 ? C3A HEC 500 J 1 HETATM 10 C C4A HEC . . . BA 5 335.99 210.145 210.298 1 50 ? C4A HEC 500 J 1 HETATM 11 C CMA HEC . . . BA 5 337.508 207.99 209.934 1 50 ? CMA HEC 500 J 1 HETATM 12 C CAA HEC . . . BA 5 338.273 208.715 212.928 1 50 ? CAA HEC 500 J 1 HETATM 13 C CBA HEC . . . BA 5 339.696 209.145 212.591 1 50 ? CBA HEC 500 J 1 HETATM 14 C CGA HEC . . . BA 5 340.68 208.309 213.367 1 50 ? CGA HEC 500 J 1 HETATM 15 O O1A HEC . . . BA 5 340.24 207.511 214.234 1 50 ? O1A HEC 500 J 1 HETATM 16 O O2A HEC . . . BA 5 341.906 208.444 213.12 1 50 ? O2A HEC 500 J 1 HETATM 17 N NB HEC . . . BA 5 333.585 211.789 209.486 1 50 ? NB HEC 500 J 1 HETATM 18 C C1B HEC . . . BA 5 334.136 210.702 208.842 1 50 ? C1B HEC 500 J 1 HETATM 19 C C2B HEC . . . BA 5 333.161 210.174 207.917 1 50 ? C2B HEC 500 J 1 HETATM 20 C C3B HEC . . . BA 5 332.055 210.936 207.998 1 50 ? C3B HEC 500 J 1 HETATM 21 C C4B HEC . . . BA 5 332.31 211.961 208.985 1 50 ? C4B HEC 500 J 1 HETATM 22 C CMB HEC . . . BA 5 333.445 208.946 207.027 1 50 ? CMB HEC 500 J 1 HETATM 23 C CAB HEC . . . BA 5 330.704 210.843 207.248 1 50 ? CAB HEC 500 J 1 HETATM 24 C CBB HEC . . . BA 5 330.369 209.873 206.391 1 50 ? CBB HEC 500 J 1 HETATM 25 N NC HEC . . . BA 5 332.71 213.759 211.282 1 50 ? NC HEC 500 J 1 HETATM 26 C C1C HEC . . . BA 5 331.615 213.777 210.443 1 50 ? C1C HEC 500 J 1 HETATM 27 C C2C HEC . . . BA 5 330.708 214.815 210.886 1 50 ? C2C HEC 500 J 1 HETATM 28 C C3C HEC . . . BA 5 331.258 215.402 211.969 1 50 ? C3C HEC 500 J 1 HETATM 29 C C4C HEC . . . BA 5 332.525 214.742 212.227 1 50 ? C4C HEC 500 J 1 HETATM 30 C CMC HEC . . . BA 5 329.365 215.124 210.185 1 50 ? CMC HEC 500 J 1 HETATM 31 C CAC HEC . . . BA 5 330.728 216.567 212.847 1 50 ? CAC HEC 500 J 1 HETATM 32 C CBC HEC . . . BA 5 329.585 217.232 212.636 1 50 ? CBC HEC 500 J 1 HETATM 33 N ND HEC . . . BA 5 334.84 213.03 213.179 1 50 ? ND HEC 500 J 1 HETATM 34 C C1D HEC . . . BA 5 334.434 214.255 213.7 1 50 ? C1D HEC 500 J 1 HETATM 35 C C2D HEC . . . BA 5 335.275 214.574 214.83 1 50 ? C2D HEC 500 J 1 HETATM 36 C C3D HEC . . . BA 5 336.263 213.407 214.954 1 50 ? C3D HEC 500 J 1 HETATM 37 C C4D HEC . . . BA 5 335.915 212.498 213.886 1 50 ? C4D HEC 500 J 1 HETATM 38 C CMD HEC . . . BA 5 335.192 215.831 215.716 1 50 ? CMD HEC 500 J 1 HETATM 39 C CAD HEC . . . BA 5 337.385 213.247 215.996 1 50 ? CAD HEC 500 J 1 HETATM 40 C CBD HEC . . . BA 5 336.909 212.317 217.106 1 50 ? CBD HEC 500 J 1 HETATM 41 C CGD HEC . . . BA 5 337.773 212.512 218.319 1 50 ? CGD HEC 500 J 1 HETATM 42 O O1D HEC . . . BA 5 337.473 211.913 219.378 1 50 ? O1D HEC 500 J 1 HETATM 43 O O2D HEC . . . BA 5 338.762 213.28 218.219 1 50 ? O2D HEC 500 J 1 # _model_server_stats.io_time_ms 38 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 67 _model_server_stats.query_time_ms 321 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 43 #