data_5JUZ
#
_model_server_result.job_id            K7pzLRYMcTewVHcIyWrVGw 
_model_server_result.datetime_utc      '2024-11-25 07:33:52' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5juz 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":403}' 
#
_entry.id    5JUZ 
#
_exptl.entry_id    5JUZ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              453.451 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '[(R)-(2,3-dihydro-1-benzofuran-5-yl){[6-(4-methylphenyl)thieno[2,3-d]pyrimidin-4-yl]amino}methyl]phosphonic acid' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5JUZ 
_cell.length_a            110.9 
_cell.length_b            110.9 
_cell.length_c            77 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5JUZ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 8_665 -y+1,-x+1,-z+1/2 0 -1 0 -1 0 0 0 0 -1 110.9 110.9 38.5 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C22 H20 N3 O4 P S' 
_chem_comp.formula_weight    453.451 
_chem_comp.id                YL4 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '[(R)-(2,3-dihydro-1-benzofuran-5-yl){[6-(4-methylphenyl)thieno[2,3-d]pyrimidin-4-yl]amino}methyl]phosphonic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CAZ OBA YL4 sing 376 n n 
CAZ CAY YL4 sing 377 n n 
OBA CAV YL4 sing 378 n n 
CAV CAW YL4 sing 379 n y 
CAV CAU YL4 doub 380 n y 
CAY CAU YL4 sing 381 n n 
CAW CAX YL4 doub 382 n y 
CAU CAT YL4 sing 383 n y 
CAX CAS YL4 sing 384 n y 
CAT CAS YL4 doub 385 n y 
CAS CAR YL4 sing 386 n n 
CAR NAQ YL4 sing 387 n n 
CAR PBB YL4 sing 388 n n 
NAQ C4 YL4 sing 389 n n 
OBC PBB YL4 doub 390 n n 
C4 N3 YL4 doub 391 n y 
C4 C5 YL4 sing 392 n y 
N3 C2 YL4 sing 393 n y 
OBE PBB YL4 sing 394 n n 
CAL C5 YL4 sing 395 n y 
CAL CAH YL4 doub 396 n y 
C5 C6 YL4 doub 397 n y 
PBB OBD YL4 sing 398 n n 
C2 N1 YL4 doub 399 n y 
CAD CAC YL4 doub 400 n y 
CAD CAE YL4 sing 401 n y 
CAH CAE YL4 sing 402 n n 
CAH SAI YL4 sing 403 n y 
CAC CAB YL4 sing 404 n y 
C6 N1 YL4 sing 405 n y 
C6 SAI YL4 sing 406 n y 
CAE CAF YL4 doub 407 n y 
CAB CAA YL4 sing 408 n n 
CAB CAG YL4 doub 409 n y 
CAF CAG YL4 sing 410 n y 
CAT H1 YL4 sing 411 n n 
CAY H2 YL4 sing 412 n n 
CAY H3 YL4 sing 413 n n 
CAZ H4 YL4 sing 414 n n 
CAZ H5 YL4 sing 415 n n 
CAW H6 YL4 sing 416 n n 
CAX H7 YL4 sing 417 n n 
CAR H8 YL4 sing 418 n n 
OBD H9 YL4 sing 419 n n 
OBE H10 YL4 sing 420 n n 
NAQ H11 YL4 sing 421 n n 
C2 H12 YL4 sing 422 n n 
CAL H13 YL4 sing 423 n n 
CAD H14 YL4 sing 424 n n 
CAC H15 YL4 sing 425 n n 
CAA H16 YL4 sing 426 n n 
CAA H17 YL4 sing 427 n n 
CAA H18 YL4 sing 428 n n 
CAG H19 YL4 sing 429 n n 
CAF H20 YL4 sing 430 n n 
#
_atom_sites.entry_id                     5JUZ 
_atom_sites.fract_transf_matrix[1][1]    0.009017 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009017 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012987 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 CL F 1 401 1 CL CL . 
C 2 CL F 1 402 2 CL CL . 
D 3 YL4 F 1 403 1 YL4 YL4 . 
E 4 HOH F 1 501 48 HOH HOH . 
E 4 HOH F 2 502 88 HOH HOH . 
E 4 HOH F 3 503 20 HOH HOH . 
E 4 HOH F 4 504 33 HOH HOH . 
E 4 HOH F 5 505 10 HOH HOH . 
E 4 HOH F 6 506 59 HOH HOH . 
E 4 HOH F 7 507 73 HOH HOH . 
E 4 HOH F 8 508 62 HOH HOH . 
E 4 HOH F 9 509 16 HOH HOH . 
E 4 HOH F 10 510 86 HOH HOH . 
E 4 HOH F 11 511 95 HOH HOH . 
E 4 HOH F 12 512 19 HOH HOH . 
E 4 HOH F 13 513 36 HOH HOH . 
E 4 HOH F 14 514 30 HOH HOH . 
E 4 HOH F 15 515 11 HOH HOH . 
E 4 HOH F 16 516 5 HOH HOH . 
E 4 HOH F 17 517 35 HOH HOH . 
E 4 HOH F 18 518 38 HOH HOH . 
E 4 HOH F 19 519 83 HOH HOH . 
E 4 HOH F 20 520 2 HOH HOH . 
E 4 HOH F 21 521 3 HOH HOH . 
E 4 HOH F 22 522 15 HOH HOH . 
E 4 HOH F 23 523 6 HOH HOH . 
E 4 HOH F 24 524 27 HOH HOH . 
E 4 HOH F 25 525 92 HOH HOH . 
E 4 HOH F 26 526 70 HOH HOH . 
E 4 HOH F 27 527 18 HOH HOH . 
E 4 HOH F 28 528 14 HOH HOH . 
E 4 HOH F 29 529 45 HOH HOH . 
E 4 HOH F 30 530 47 HOH HOH . 
E 4 HOH F 31 531 49 HOH HOH . 
E 4 HOH F 32 532 39 HOH HOH . 
E 4 HOH F 33 533 23 HOH HOH . 
E 4 HOH F 34 534 40 HOH HOH . 
E 4 HOH F 35 535 69 HOH HOH . 
E 4 HOH F 36 536 28 HOH HOH . 
E 4 HOH F 37 537 26 HOH HOH . 
E 4 HOH F 38 538 56 HOH HOH . 
E 4 HOH F 39 539 51 HOH HOH . 
E 4 HOH F 40 540 13 HOH HOH . 
E 4 HOH F 41 541 72 HOH HOH . 
E 4 HOH F 42 542 41 HOH HOH . 
E 4 HOH F 43 543 71 HOH HOH . 
E 4 HOH F 44 544 53 HOH HOH . 
E 4 HOH F 45 545 29 HOH HOH . 
E 4 HOH F 46 546 44 HOH HOH . 
E 4 HOH F 47 547 32 HOH HOH . 
E 4 HOH F 48 548 64 HOH HOH . 
E 4 HOH F 49 549 1 HOH HOH . 
E 4 HOH F 50 550 54 HOH HOH . 
E 4 HOH F 51 551 22 HOH HOH . 
E 4 HOH F 52 552 4 HOH HOH . 
E 4 HOH F 53 553 57 HOH HOH . 
E 4 HOH F 54 554 52 HOH HOH . 
E 4 HOH F 55 555 42 HOH HOH . 
E 4 HOH F 56 556 87 HOH HOH . 
E 4 HOH F 57 557 91 HOH HOH . 
E 4 HOH F 58 558 66 HOH HOH . 
E 4 HOH F 59 559 68 HOH HOH . 
E 4 HOH F 60 560 46 HOH HOH . 
E 4 HOH F 61 561 12 HOH HOH . 
E 4 HOH F 62 562 84 HOH HOH . 
E 4 HOH F 63 563 8 HOH HOH . 
E 4 HOH F 64 564 61 HOH HOH . 
E 4 HOH F 65 565 9 HOH HOH . 
E 4 HOH F 66 566 90 HOH HOH . 
E 4 HOH F 67 567 93 HOH HOH . 
E 4 HOH F 68 568 82 HOH HOH . 
E 4 HOH F 69 569 58 HOH HOH . 
E 4 HOH F 70 570 76 HOH HOH . 
E 4 HOH F 71 571 89 HOH HOH . 
E 4 HOH F 72 572 31 HOH HOH . 
E 4 HOH F 73 573 37 HOH HOH . 
E 4 HOH F 74 574 17 HOH HOH . 
E 4 HOH F 75 575 94 HOH HOH . 
E 4 HOH F 76 576 55 HOH HOH . 
E 4 HOH F 77 577 65 HOH HOH . 
E 4 HOH F 78 578 7 HOH HOH . 
E 4 HOH F 79 579 75 HOH HOH . 
E 4 HOH F 80 580 24 HOH HOH . 
E 4 HOH F 81 581 63 HOH HOH . 
E 4 HOH F 82 582 74 HOH HOH . 
E 4 HOH F 83 583 77 HOH HOH . 
E 4 HOH F 84 584 43 HOH HOH . 
E 4 HOH F 85 585 67 HOH HOH . 
E 4 HOH F 86 586 21 HOH HOH . 
E 4 HOH F 87 587 85 HOH HOH . 
E 4 HOH F 88 588 34 HOH HOH . 
E 4 HOH F 89 589 60 HOH HOH . 
E 4 HOH F 90 590 78 HOH HOH . 
E 4 HOH F 91 591 79 HOH HOH . 
E 4 HOH F 92 592 80 HOH HOH . 
E 4 HOH F 93 593 25 HOH HOH . 
E 4 HOH F 94 594 81 HOH HOH . 
E 4 HOH F 95 595 50 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CAT YL4 . . . D 3 8.183 69.294 25.041 1 87.45 ? CAT YL4 403 F 1 
HETATM 2 C CAU YL4 . . . D 3 8.534 69.136 23.736 1 104.02 ? CAU YL4 403 F 1 
HETATM 3 C CAY YL4 . . . D 3 8.896 67.98 23.034 1 105.18 ? CAY YL4 403 F 1 
HETATM 4 C CAZ YL4 . . . D 3 8.707 68.439 21.55 1 103.43 ? CAZ YL4 403 F 1 
HETATM 5 O OBA YL4 . . . D 3 8.988 69.86 21.586 1 99.86 ? OBA YL4 403 F 1 
HETATM 6 C CAV YL4 . . . D 3 8.619 70.201 22.865 1 100.77 ? CAV YL4 403 F 1 
HETATM 7 C CAW YL4 . . . D 3 8.328 71.437 23.296 1 95.84 ? CAW YL4 403 F 1 
HETATM 8 C CAX YL4 . . . D 3 7.948 71.66 24.615 1 85.91 ? CAX YL4 403 F 1 
HETATM 9 C CAS YL4 . . . D 3 7.871 70.578 25.519 1 86.06 ? CAS YL4 403 F 1 
HETATM 10 C CAR YL4 . . . D 3 7.487 70.806 26.852 1 89.87 ? CAR YL4 403 F 1 
HETATM 11 P PBB YL4 . . . D 3 8.881 71.728 27.795 1 89.84 ? PBB YL4 403 F 1 
HETATM 12 O OBD YL4 . . . D 3 8.576 71.714 29.446 1 80.81 ? OBD YL4 403 F 1 
HETATM 13 O OBE YL4 . . . D 3 10.334 70.957 27.505 1 86.48 ? OBE YL4 403 F 1 
HETATM 14 O OBC YL4 . . . D 3 8.75 73.354 27.282 1 101.36 ? OBC YL4 403 F 1 
HETATM 15 N NAQ YL4 . . . D 3 6.277 71.692 26.887 1 89.77 ? NAQ YL4 403 F 1 
HETATM 16 C C4 YL4 . . . D 3 5.068 71.335 27.358 1 97.5 ? C4 YL4 403 F 1 
HETATM 17 N N3 YL4 . . . D 3 4.743 70.017 27.434 1 101.98 ? N3 YL4 403 F 1 
HETATM 18 C C2 YL4 . . . D 3 3.499 69.636 27.922 1 95.24 ? C2 YL4 403 F 1 
HETATM 19 N N1 YL4 . . . D 3 2.63 70.658 28.309 1 91.66 ? N1 YL4 403 F 1 
HETATM 20 C C6 YL4 . . . D 3 2.997 71.96 28.213 1 93.98 ? C6 YL4 403 F 1 
HETATM 21 S SAI YL4 . . . D 3 2.131 73.371 28.609 1 79.28 ? SAI YL4 403 F 1 
HETATM 22 C C5 YL4 . . . D 3 4.214 72.342 27.735 1 96.2 ? C5 YL4 403 F 1 
HETATM 23 C CAL YL4 . . . D 3 4.371 73.725 27.715 1 92.62 ? CAL YL4 403 F 1 
HETATM 24 C CAH YL4 . . . D 3 3.33 74.477 28.169 1 90.22 ? CAH YL4 403 F 1 
HETATM 25 C CAE YL4 . . . D 3 3.219 75.86 28.24 1 83.61 ? CAE YL4 403 F 1 
HETATM 26 C CAD YL4 . . . D 3 1.949 76.453 28.147 1 74.93 ? CAD YL4 403 F 1 
HETATM 27 C CAC YL4 . . . D 3 1.774 77.834 28.205 1 73.64 ? CAC YL4 403 F 1 
HETATM 28 C CAB YL4 . . . D 3 2.846 78.712 28.356 1 72 ? CAB YL4 403 F 1 
HETATM 29 C CAA YL4 . . . D 3 2.577 80.104 28.39 1 69.23 ? CAA YL4 403 F 1 
HETATM 30 C CAG YL4 . . . D 3 4.133 78.166 28.448 1 66.36 ? CAG YL4 403 F 1 
HETATM 31 C CAF YL4 . . . D 3 4.307 76.769 28.385 1 76.46 ? CAF YL4 403 F 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           279 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           31 
#