data_5JV0 # _model_server_result.job_id ORTh1cVjqr5HJ9D7-dUhXw _model_server_result.datetime_utc '2024-11-25 07:20:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5jv0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":405}' # _entry.id 5JV0 # _exptl.entry_id 5JV0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 443.431 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[(1R)-2-(3-fluorophenyl)-1-{[6-(4-methylphenyl)thieno[2,3-d]pyrimidin-4-yl]amino}ethyl]phosphonic acid' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5JV0 _cell.length_a 111.54 _cell.length_b 111.54 _cell.length_c 75.98 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5JV0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_665 -y+1,-x+1,-z+1/2 0 -1 0 -1 0 0 0 0 -1 111.54 111.54 37.99 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 F N N # _chem_comp.formula 'C21 H19 F N3 O3 P S' _chem_comp.formula_weight 443.431 _chem_comp.id YL5 _chem_comp.mon_nstd_flag . _chem_comp.name '[(1R)-2-(3-fluorophenyl)-1-{[6-(4-methylphenyl)thieno[2,3-d]pyrimidin-4-yl]amino}ethyl]phosphonic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OAU PAA YL5 doub 380 n n OAE PAA YL5 sing 381 n n N1 C2 YL5 doub 382 n y N1 C6 YL5 sing 383 n y C2 N3 YL5 sing 384 n y SAN C6 YL5 sing 385 n y SAN CAM YL5 sing 386 n y C6 C5 YL5 doub 387 n y PAA CAC YL5 sing 388 n n PAA OAD YL5 sing 389 n n N3 C4 YL5 doub 390 n y C5 C4 YL5 sing 391 n y C5 CAL YL5 sing 392 n y C4 NAB YL5 sing 393 n n CAM CAL YL5 doub 394 n y CAM CAO YL5 sing 395 n n CAP CAO YL5 doub 396 n y CAP CAQ YL5 sing 397 n y CAO CAT YL5 sing 398 n y CAQ CAR YL5 doub 399 n y CAT CAS YL5 doub 400 n y CAR CAS YL5 sing 401 n y CAR CAW YL5 sing 402 n n NAB CAC YL5 sing 403 n n CAC CAV YL5 sing 404 n n CAV CAX YL5 sing 405 n n CAY CAX YL5 doub 406 n y CAY CAZ YL5 sing 407 n y CAX CBC YL5 sing 408 n y FBD CAZ YL5 sing 409 n n CAZ CBA YL5 doub 410 n y CBC CBB YL5 doub 411 n y CBA CBB YL5 sing 412 n y CAY H1 YL5 sing 413 n n CBA H2 YL5 sing 414 n n CBB H3 YL5 sing 415 n n CBC H4 YL5 sing 416 n n CAV H5 YL5 sing 417 n n CAV H6 YL5 sing 418 n n CAC H7 YL5 sing 419 n n OAD H8 YL5 sing 420 n n OAE H9 YL5 sing 421 n n NAB H10 YL5 sing 422 n n C2 H11 YL5 sing 423 n n CAL H12 YL5 sing 424 n n CAP H13 YL5 sing 425 n n CAQ H14 YL5 sing 426 n n CAW H15 YL5 sing 427 n n CAW H16 YL5 sing 428 n n CAW H17 YL5 sing 429 n n CAS H18 YL5 sing 430 n n CAT H19 YL5 sing 431 n n # _atom_sites.entry_id 5JV0 _atom_sites.fract_transf_matrix[1][1] 0.008965 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008965 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013161 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 F 1 401 1 SO4 SO4 . C 2 SO4 F 1 402 2 SO4 SO4 . D 3 YL5 F 1 403 1 YL5 YL5 . E 3 YL5 F 1 404 2 YL5 YL5 . F 3 YL5 F 1 405 3 YL5 YL5 . G 4 HOH F 1 501 69 HOH HOH . G 4 HOH F 2 502 34 HOH HOH . G 4 HOH F 3 503 48 HOH HOH . G 4 HOH F 4 504 54 HOH HOH . G 4 HOH F 5 505 8 HOH HOH . G 4 HOH F 6 506 106 HOH HOH . G 4 HOH F 7 507 44 HOH HOH . G 4 HOH F 8 508 56 HOH HOH . G 4 HOH F 9 509 42 HOH HOH . G 4 HOH F 10 510 43 HOH HOH . G 4 HOH F 11 511 65 HOH HOH . G 4 HOH F 12 512 26 HOH HOH . G 4 HOH F 13 513 35 HOH HOH . G 4 HOH F 14 514 23 HOH HOH . G 4 HOH F 15 515 12 HOH HOH . G 4 HOH F 16 516 22 HOH HOH . G 4 HOH F 17 517 3 HOH HOH . G 4 HOH F 18 518 4 HOH HOH . G 4 HOH F 19 519 98 HOH HOH . G 4 HOH F 20 520 84 HOH HOH . G 4 HOH F 21 521 105 HOH HOH . G 4 HOH F 22 522 11 HOH HOH . G 4 HOH F 23 523 17 HOH HOH . G 4 HOH F 24 524 24 HOH HOH . G 4 HOH F 25 525 68 HOH HOH . G 4 HOH F 26 526 18 HOH HOH . G 4 HOH F 27 527 63 HOH HOH . G 4 HOH F 28 528 32 HOH HOH . G 4 HOH F 29 529 37 HOH HOH . G 4 HOH F 30 530 57 HOH HOH . G 4 HOH F 31 531 66 HOH HOH . G 4 HOH F 32 532 38 HOH HOH . G 4 HOH F 33 533 14 HOH HOH . G 4 HOH F 34 534 61 HOH HOH . G 4 HOH F 35 535 88 HOH HOH . G 4 HOH F 36 536 96 HOH HOH . G 4 HOH F 37 537 5 HOH HOH . G 4 HOH F 38 538 16 HOH HOH . G 4 HOH F 39 539 7 HOH HOH . G 4 HOH F 40 540 50 HOH HOH . G 4 HOH F 41 541 55 HOH HOH . G 4 HOH F 42 542 94 HOH HOH . G 4 HOH F 43 543 76 HOH HOH . G 4 HOH F 44 544 107 HOH HOH . G 4 HOH F 45 545 10 HOH HOH . G 4 HOH F 46 546 74 HOH HOH . G 4 HOH F 47 547 13 HOH HOH . G 4 HOH F 48 548 39 HOH HOH . G 4 HOH F 49 549 72 HOH HOH . G 4 HOH F 50 550 40 HOH HOH . G 4 HOH F 51 551 20 HOH HOH . G 4 HOH F 52 552 41 HOH HOH . G 4 HOH F 53 553 75 HOH HOH . G 4 HOH F 54 554 103 HOH HOH . G 4 HOH F 55 555 109 HOH HOH . G 4 HOH F 56 556 33 HOH HOH . G 4 HOH F 57 557 59 HOH HOH . G 4 HOH F 58 558 78 HOH HOH . G 4 HOH F 59 559 101 HOH HOH . G 4 HOH F 60 560 95 HOH HOH . G 4 HOH F 61 561 29 HOH HOH . G 4 HOH F 62 562 102 HOH HOH . G 4 HOH F 63 563 52 HOH HOH . G 4 HOH F 64 564 73 HOH HOH . G 4 HOH F 65 565 51 HOH HOH . G 4 HOH F 66 566 47 HOH HOH . G 4 HOH F 67 567 36 HOH HOH . G 4 HOH F 68 568 67 HOH HOH . G 4 HOH F 69 569 45 HOH HOH . G 4 HOH F 70 570 110 HOH HOH . G 4 HOH F 71 571 2 HOH HOH . G 4 HOH F 72 572 90 HOH HOH . G 4 HOH F 73 573 6 HOH HOH . G 4 HOH F 74 574 99 HOH HOH . G 4 HOH F 75 575 49 HOH HOH . G 4 HOH F 76 576 15 HOH HOH . G 4 HOH F 77 577 1 HOH HOH . G 4 HOH F 78 578 28 HOH HOH . G 4 HOH F 79 579 87 HOH HOH . G 4 HOH F 80 580 64 HOH HOH . G 4 HOH F 81 581 9 HOH HOH . G 4 HOH F 82 582 27 HOH HOH . G 4 HOH F 83 583 85 HOH HOH . G 4 HOH F 84 584 100 HOH HOH . G 4 HOH F 85 585 79 HOH HOH . G 4 HOH F 86 586 104 HOH HOH . G 4 HOH F 87 587 108 HOH HOH . G 4 HOH F 88 588 46 HOH HOH . G 4 HOH F 89 589 83 HOH HOH . G 4 HOH F 90 590 60 HOH HOH . G 4 HOH F 91 591 97 HOH HOH . G 4 HOH F 92 592 19 HOH HOH . G 4 HOH F 93 593 53 HOH HOH . G 4 HOH F 94 594 77 HOH HOH . G 4 HOH F 95 595 58 HOH HOH . G 4 HOH F 96 596 86 HOH HOH . G 4 HOH F 97 597 89 HOH HOH . G 4 HOH F 98 598 21 HOH HOH . G 4 HOH F 99 599 82 HOH HOH . G 4 HOH F 100 600 71 HOH HOH . G 4 HOH F 101 601 25 HOH HOH . G 4 HOH F 102 602 111 HOH HOH . G 4 HOH F 103 603 93 HOH HOH . G 4 HOH F 104 604 80 HOH HOH . G 4 HOH F 105 605 30 HOH HOH . G 4 HOH F 106 606 81 HOH HOH . G 4 HOH F 107 607 62 HOH HOH . G 4 HOH F 108 608 92 HOH HOH . G 4 HOH F 109 609 31 HOH HOH . G 4 HOH F 110 610 70 HOH HOH . G 4 HOH F 111 611 91 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAY YL5 . . . F 3 -1.88 69.083 40.055 1 103.9 ? CAY YL5 405 F 1 HETATM 2 C CAZ YL5 . . . F 3 -2.165 69.907 41.132 1 102.98 ? CAZ YL5 405 F 1 HETATM 3 F FBD YL5 . . . F 3 -2.571 71.2 40.838 1 102.29 ? FBD YL5 405 F 1 HETATM 4 C CBA YL5 . . . F 3 -2.033 69.422 42.444 1 98.93 ? CBA YL5 405 F 1 HETATM 5 C CBB YL5 . . . F 3 -1.617 68.109 42.668 1 95.58 ? CBB YL5 405 F 1 HETATM 6 C CBC YL5 . . . F 3 -1.335 67.284 41.578 1 99.6 ? CBC YL5 405 F 1 HETATM 7 C CAX YL5 . . . F 3 -1.47 67.752 40.255 1 104.92 ? CAX YL5 405 F 1 HETATM 8 C CAV YL5 . . . F 3 -1.146 66.856 39.231 1 109.93 ? CAV YL5 405 F 1 HETATM 9 C CAC YL5 . . . F 3 -1.192 67.429 37.759 1 112.05 ? CAC YL5 405 F 1 HETATM 10 P PAA YL5 . . . F 3 -0.44 66.263 36.493 1 122.1 ? PAA YL5 405 F 1 HETATM 11 O OAD YL5 . . . F 3 -1.652 65.326 35.85 1 98.81 ? OAD YL5 405 F 1 HETATM 12 O OAU YL5 . . . F 3 0.134 67.087 35.395 1 116.62 ? OAU YL5 405 F 1 HETATM 13 O OAE YL5 . . . F 3 0.478 65.374 37.266 1 117.69 ? OAE YL5 405 F 1 HETATM 14 N NAB YL5 . . . F 3 -2.51 67.823 37.197 1 114.36 ? NAB YL5 405 F 1 HETATM 15 C C4 YL5 . . . F 3 -3.725 67.266 37.414 1 126.08 ? C4 YL5 405 F 1 HETATM 16 N N3 YL5 . . . F 3 -3.878 65.938 37.711 1 127.06 ? N3 YL5 405 F 1 HETATM 17 C C2 YL5 . . . F 3 -5.163 65.388 37.892 1 117.18 ? C2 YL5 405 F 1 HETATM 18 N N1 YL5 . . . F 3 -6.257 66.268 37.738 1 117.93 ? N1 YL5 405 F 1 HETATM 19 C C6 YL5 . . . F 3 -6.047 67.584 37.429 1 130.55 ? C6 YL5 405 F 1 HETATM 20 S SAN YL5 . . . F 3 -7.137 68.869 37.167 1 113.45 ? SAN YL5 405 F 1 HETATM 21 C C5 YL5 . . . F 3 -4.795 68.106 37.258 1 130.57 ? C5 YL5 405 F 1 HETATM 22 C CAL YL5 . . . F 3 -4.812 69.453 36.955 1 127.69 ? CAL YL5 405 F 1 HETATM 23 C CAM YL5 . . . F 3 -6.007 70.053 36.857 1 121.05 ? CAM YL5 405 F 1 HETATM 24 C CAO YL5 . . . F 3 -6.249 71.372 36.588 1 114.51 ? CAO YL5 405 F 1 HETATM 25 C CAP YL5 . . . F 3 -5.348 72.398 36.96 1 103.5 ? CAP YL5 405 F 1 HETATM 26 C CAQ YL5 . . . F 3 -5.639 73.752 36.695 1 98 ? CAQ YL5 405 F 1 HETATM 27 C CAR YL5 . . . F 3 -6.837 74.134 36.075 1 96.97 ? CAR YL5 405 F 1 HETATM 28 C CAW YL5 . . . F 3 -7.12 75.483 35.816 1 87.44 ? CAW YL5 405 F 1 HETATM 29 C CAS YL5 . . . F 3 -7.744 73.132 35.705 1 107.98 ? CAS YL5 405 F 1 HETATM 30 C CAT YL5 . . . F 3 -7.449 71.781 35.962 1 113.64 ? CAT YL5 405 F 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 30 #