data_5JV1
#
_model_server_result.job_id            o-BmuL3gpvYuHAvisAYq7Q 
_model_server_result.datetime_utc      '2024-11-28 23:28:29' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5jv1 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":403}' 
#
_entry.id    5JV1 
#
_exptl.entry_id    5JV1 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              477.876 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '[(1R)-1-{[6-(3-chloro-4-methylphenyl)thieno[2,3-d]pyrimidin-4-yl]amino}-2-(3-fluorophenyl)ethyl]phosphonic acid' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5JV1 
_cell.length_a            111.05 
_cell.length_b            111.05 
_cell.length_c            76.2 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5JV1 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 8_665 -y+1,-x+1,-z+1/2 0 -1 0 -1 0 0 0 0 -1 111.05 111.05 38.1 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 E N N 
#
_chem_comp.formula           'C21 H18 Cl F N3 O3 P S' 
_chem_comp.formula_weight    477.876 
_chem_comp.id                YL6 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '[(1R)-1-{[6-(3-chloro-4-methylphenyl)thieno[2,3-d]pyrimidin-4-yl]amino}-2-(3-fluorophenyl)ethyl]phosphonic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 YL6 doub 380 n y 
N1 C6 YL6 sing 381 n y 
SAN C6 YL6 sing 382 n y 
SAN CAM YL6 sing 383 n y 
OAD PAA YL6 doub 384 n n 
C2 N3 YL6 sing 385 n y 
C6 C5 YL6 doub 386 n y 
CAT CAS YL6 doub 387 n y 
CAT CAO YL6 sing 388 n y 
CAM CAO YL6 sing 389 n n 
CAM CAL YL6 doub 390 n y 
N3 C4 YL6 doub 391 n y 
CAS CAR YL6 sing 392 n y 
C5 CAL YL6 sing 393 n y 
C5 C4 YL6 sing 394 n y 
CAO CAP YL6 doub 395 n y 
OAE PAA YL6 sing 396 n n 
CAR CAW YL6 sing 397 n n 
CAR CAQ YL6 doub 398 n y 
CAP CAQ YL6 sing 399 n y 
C4 NAB YL6 sing 400 n n 
CAQ CL YL6 sing 401 n n 
PAA OAU YL6 sing 402 n n 
PAA CAC YL6 sing 403 n n 
NAB CAC YL6 sing 404 n n 
CAC CAV YL6 sing 405 n n 
CAV CAX YL6 sing 406 n n 
CBC CAX YL6 doub 407 n y 
CBC CBB YL6 sing 408 n y 
CAX CAY YL6 sing 409 n y 
CBB CBA YL6 doub 410 n y 
CAY CAZ YL6 doub 411 n y 
CBA CAZ YL6 sing 412 n y 
CAZ FBD YL6 sing 413 n n 
CAP H1 YL6 sing 414 n n 
CAW H2 YL6 sing 415 n n 
CAW H3 YL6 sing 416 n n 
CAW H4 YL6 sing 417 n n 
CAS H5 YL6 sing 418 n n 
CAT H6 YL6 sing 419 n n 
CAL H7 YL6 sing 420 n n 
C2 H8 YL6 sing 421 n n 
NAB H9 YL6 sing 422 n n 
CAC H10 YL6 sing 423 n n 
OAU H11 YL6 sing 424 n n 
OAE H12 YL6 sing 425 n n 
CAV H13 YL6 sing 426 n n 
CAV H14 YL6 sing 427 n n 
CAY H15 YL6 sing 428 n n 
CBA H16 YL6 sing 429 n n 
CBB H17 YL6 sing 430 n n 
CBC H18 YL6 sing 431 n n 
#
_atom_sites.entry_id                     5JV1 
_atom_sites.fract_transf_matrix[1][1]    0.009005 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009005 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013123 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 SO4 F 1 401 1 SO4 SO4 . 
C 2 SO4 F 1 402 2 SO4 SO4 . 
D 3 YL6 F 1 403 1 YL6 YL6 . 
E 3 YL6 F 1 404 2 YL6 YL6 . 
F 4 HOH F 1 501 14 HOH HOH . 
F 4 HOH F 2 502 39 HOH HOH . 
F 4 HOH F 3 503 57 HOH HOH . 
F 4 HOH F 4 504 55 HOH HOH . 
F 4 HOH F 5 505 11 HOH HOH . 
F 4 HOH F 6 506 22 HOH HOH . 
F 4 HOH F 7 507 6 HOH HOH . 
F 4 HOH F 8 508 27 HOH HOH . 
F 4 HOH F 9 509 33 HOH HOH . 
F 4 HOH F 10 510 52 HOH HOH . 
F 4 HOH F 11 511 61 HOH HOH . 
F 4 HOH F 12 512 7 HOH HOH . 
F 4 HOH F 13 513 34 HOH HOH . 
F 4 HOH F 14 514 50 HOH HOH . 
F 4 HOH F 15 515 9 HOH HOH . 
F 4 HOH F 16 516 26 HOH HOH . 
F 4 HOH F 17 517 49 HOH HOH . 
F 4 HOH F 18 518 58 HOH HOH . 
F 4 HOH F 19 519 54 HOH HOH . 
F 4 HOH F 20 520 19 HOH HOH . 
F 4 HOH F 21 521 71 HOH HOH . 
F 4 HOH F 22 522 1 HOH HOH . 
F 4 HOH F 23 523 8 HOH HOH . 
F 4 HOH F 24 524 3 HOH HOH . 
F 4 HOH F 25 525 31 HOH HOH . 
F 4 HOH F 26 526 20 HOH HOH . 
F 4 HOH F 27 527 51 HOH HOH . 
F 4 HOH F 28 528 18 HOH HOH . 
F 4 HOH F 29 529 17 HOH HOH . 
F 4 HOH F 30 530 63 HOH HOH . 
F 4 HOH F 31 531 28 HOH HOH . 
F 4 HOH F 32 532 4 HOH HOH . 
F 4 HOH F 33 533 59 HOH HOH . 
F 4 HOH F 34 534 65 HOH HOH . 
F 4 HOH F 35 535 67 HOH HOH . 
F 4 HOH F 36 536 5 HOH HOH . 
F 4 HOH F 37 537 37 HOH HOH . 
F 4 HOH F 38 538 72 HOH HOH . 
F 4 HOH F 39 539 32 HOH HOH . 
F 4 HOH F 40 540 10 HOH HOH . 
F 4 HOH F 41 541 70 HOH HOH . 
F 4 HOH F 42 542 41 HOH HOH . 
F 4 HOH F 43 543 29 HOH HOH . 
F 4 HOH F 44 544 60 HOH HOH . 
F 4 HOH F 45 545 24 HOH HOH . 
F 4 HOH F 46 546 15 HOH HOH . 
F 4 HOH F 47 547 23 HOH HOH . 
F 4 HOH F 48 548 2 HOH HOH . 
F 4 HOH F 49 549 35 HOH HOH . 
F 4 HOH F 50 550 21 HOH HOH . 
F 4 HOH F 51 551 66 HOH HOH . 
F 4 HOH F 52 552 38 HOH HOH . 
F 4 HOH F 53 553 12 HOH HOH . 
F 4 HOH F 54 554 43 HOH HOH . 
F 4 HOH F 55 555 25 HOH HOH . 
F 4 HOH F 56 556 13 HOH HOH . 
F 4 HOH F 57 557 56 HOH HOH . 
F 4 HOH F 58 558 30 HOH HOH . 
F 4 HOH F 59 559 42 HOH HOH . 
F 4 HOH F 60 560 47 HOH HOH . 
F 4 HOH F 61 561 53 HOH HOH . 
F 4 HOH F 62 562 62 HOH HOH . 
F 4 HOH F 63 563 68 HOH HOH . 
F 4 HOH F 64 564 36 HOH HOH . 
F 4 HOH F 65 565 48 HOH HOH . 
F 4 HOH F 66 566 69 HOH HOH . 
F 4 HOH F 67 567 46 HOH HOH . 
F 4 HOH F 68 568 45 HOH HOH . 
F 4 HOH F 69 569 64 HOH HOH . 
F 4 HOH F 70 570 44 HOH HOH . 
F 4 HOH F 71 571 16 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CAP YL6 . . . D 3 3.288 76.461 28.274 1 101.01 ? CAP YL6 403 F 1 
HETATM 2 C CAQ YL6 . . . D 3 2.658 77.693 28.397 1 98.85 ? CAQ YL6 403 F 1 
HETATM 3 CL CL YL6 . . . D 3 0.972 77.663 28.766 1 110.49 ? CL YL6 403 F 1 
HETATM 4 C CAR YL6 . . . D 3 3.371 78.892 28.236 1 87.7 ? CAR YL6 403 F 1 
HETATM 5 C CAW YL6 . . . D 3 2.709 80.116 28.358 1 81.46 ? CAW YL6 403 F 1 
HETATM 6 C CAS YL6 . . . D 3 4.743 78.825 27.949 1 87.98 ? CAS YL6 403 F 1 
HETATM 7 C CAT YL6 . . . D 3 5.39 77.589 27.824 1 89.51 ? CAT YL6 403 F 1 
HETATM 8 C CAO YL6 . . . D 3 4.666 76.378 27.979 1 107.05 ? CAO YL6 403 F 1 
HETATM 9 C CAM YL6 . . . D 3 5.274 75.166 27.831 1 117.66 ? CAM YL6 403 F 1 
HETATM 10 S SAN YL6 . . . D 3 6.749 74.954 26.965 1 104.03 ? SAN YL6 403 F 1 
HETATM 11 C CAL YL6 . . . D 3 4.831 73.938 28.262 1 112.83 ? CAL YL6 403 F 1 
HETATM 12 C C5 YL6 . . . D 3 5.635 72.849 27.973 1 122.46 ? C5 YL6 403 F 1 
HETATM 13 C C6 YL6 . . . D 3 6.767 73.189 27.262 1 122.81 ? C6 YL6 403 F 1 
HETATM 14 N N1 YL6 . . . D 3 7.675 72.258 26.872 1 117.43 ? N1 YL6 403 F 1 
HETATM 15 C C2 YL6 . . . D 3 7.508 70.904 27.183 1 121.3 ? C2 YL6 403 F 1 
HETATM 16 N N3 YL6 . . . D 3 6.371 70.574 27.915 1 120.8 ? N3 YL6 403 F 1 
HETATM 17 C C4 YL6 . . . D 3 5.464 71.525 28.287 1 121.03 ? C4 YL6 403 F 1 
HETATM 18 N NAB YL6 . . . D 3 4.361 71.153 29.002 1 108.39 ? NAB YL6 403 F 1 
HETATM 19 C CAC YL6 . . . D 3 4.144 69.723 29.397 1 106.65 ? CAC YL6 403 F 1 
HETATM 20 P PAA YL6 . . . D 3 2.728 69.137 28.457 1 105.82 ? PAA YL6 403 F 1 
HETATM 21 O OAD YL6 . . . D 3 3.638 68.643 27.137 1 89.28 ? OAD YL6 403 F 1 
HETATM 22 O OAU YL6 . . . D 3 2.101 68.036 29.26 1 117.11 ? OAU YL6 403 F 1 
HETATM 23 O OAE YL6 . . . D 3 1.858 70.299 28.052 1 125.33 ? OAE YL6 403 F 1 
HETATM 24 C CAV YL6 . . . D 3 3.974 69.47 30.933 1 94.8 ? CAV YL6 403 F 1 
HETATM 25 C CAX YL6 . . . D 3 4.912 70.26 31.585 1 95.79 ? CAX YL6 403 F 1 
HETATM 26 C CAY YL6 . . . D 3 4.481 71.242 32.483 1 95.56 ? CAY YL6 403 F 1 
HETATM 27 C CAZ YL6 . . . D 3 5.428 72.058 33.123 1 98.15 ? CAZ YL6 403 F 1 
HETATM 28 F FBD YL6 . . . D 3 4.988 72.967 33.994 1 101.15 ? FBD YL6 403 F 1 
HETATM 29 C CBA YL6 . . . D 3 6.806 71.918 32.877 1 91.53 ? CBA YL6 403 F 1 
HETATM 30 C CBB YL6 . . . D 3 7.235 70.956 31.951 1 98.42 ? CBB YL6 403 F 1 
HETATM 31 C CBC YL6 . . . D 3 6.295 70.134 31.309 1 96.41 ? CBC YL6 403 F 1 
#
_model_server_stats.io_time_ms              28 
_model_server_stats.parse_time_ms           31 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           360 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           31 
#