data_5JV1 # _model_server_result.job_id LvDqi-CtcAEa47hfvZoIow _model_server_result.datetime_utc '2024-11-25 07:37:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5jv1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":404}' # _entry.id 5JV1 # _exptl.entry_id 5JV1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 477.876 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[(1R)-1-{[6-(3-chloro-4-methylphenyl)thieno[2,3-d]pyrimidin-4-yl]amino}-2-(3-fluorophenyl)ethyl]phosphonic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5JV1 _cell.length_a 111.05 _cell.length_b 111.05 _cell.length_c 76.2 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5JV1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_665 -y+1,-x+1,-z+1/2 0 -1 0 -1 0 0 0 0 -1 111.05 111.05 38.1 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N # _chem_comp.formula 'C21 H18 Cl F N3 O3 P S' _chem_comp.formula_weight 477.876 _chem_comp.id YL6 _chem_comp.mon_nstd_flag . _chem_comp.name '[(1R)-1-{[6-(3-chloro-4-methylphenyl)thieno[2,3-d]pyrimidin-4-yl]amino}-2-(3-fluorophenyl)ethyl]phosphonic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 YL6 doub 380 n y N1 C6 YL6 sing 381 n y SAN C6 YL6 sing 382 n y SAN CAM YL6 sing 383 n y OAD PAA YL6 doub 384 n n C2 N3 YL6 sing 385 n y C6 C5 YL6 doub 386 n y CAT CAS YL6 doub 387 n y CAT CAO YL6 sing 388 n y CAM CAO YL6 sing 389 n n CAM CAL YL6 doub 390 n y N3 C4 YL6 doub 391 n y CAS CAR YL6 sing 392 n y C5 CAL YL6 sing 393 n y C5 C4 YL6 sing 394 n y CAO CAP YL6 doub 395 n y OAE PAA YL6 sing 396 n n CAR CAW YL6 sing 397 n n CAR CAQ YL6 doub 398 n y CAP CAQ YL6 sing 399 n y C4 NAB YL6 sing 400 n n CAQ CL YL6 sing 401 n n PAA OAU YL6 sing 402 n n PAA CAC YL6 sing 403 n n NAB CAC YL6 sing 404 n n CAC CAV YL6 sing 405 n n CAV CAX YL6 sing 406 n n CBC CAX YL6 doub 407 n y CBC CBB YL6 sing 408 n y CAX CAY YL6 sing 409 n y CBB CBA YL6 doub 410 n y CAY CAZ YL6 doub 411 n y CBA CAZ YL6 sing 412 n y CAZ FBD YL6 sing 413 n n CAP H1 YL6 sing 414 n n CAW H2 YL6 sing 415 n n CAW H3 YL6 sing 416 n n CAW H4 YL6 sing 417 n n CAS H5 YL6 sing 418 n n CAT H6 YL6 sing 419 n n CAL H7 YL6 sing 420 n n C2 H8 YL6 sing 421 n n NAB H9 YL6 sing 422 n n CAC H10 YL6 sing 423 n n OAU H11 YL6 sing 424 n n OAE H12 YL6 sing 425 n n CAV H13 YL6 sing 426 n n CAV H14 YL6 sing 427 n n CAY H15 YL6 sing 428 n n CBA H16 YL6 sing 429 n n CBB H17 YL6 sing 430 n n CBC H18 YL6 sing 431 n n # _atom_sites.entry_id 5JV1 _atom_sites.fract_transf_matrix[1][1] 0.009005 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009005 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013123 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 F 1 401 1 SO4 SO4 . C 2 SO4 F 1 402 2 SO4 SO4 . D 3 YL6 F 1 403 1 YL6 YL6 . E 3 YL6 F 1 404 2 YL6 YL6 . F 4 HOH F 1 501 14 HOH HOH . F 4 HOH F 2 502 39 HOH HOH . F 4 HOH F 3 503 57 HOH HOH . F 4 HOH F 4 504 55 HOH HOH . F 4 HOH F 5 505 11 HOH HOH . F 4 HOH F 6 506 22 HOH HOH . F 4 HOH F 7 507 6 HOH HOH . F 4 HOH F 8 508 27 HOH HOH . F 4 HOH F 9 509 33 HOH HOH . F 4 HOH F 10 510 52 HOH HOH . F 4 HOH F 11 511 61 HOH HOH . F 4 HOH F 12 512 7 HOH HOH . F 4 HOH F 13 513 34 HOH HOH . F 4 HOH F 14 514 50 HOH HOH . F 4 HOH F 15 515 9 HOH HOH . F 4 HOH F 16 516 26 HOH HOH . F 4 HOH F 17 517 49 HOH HOH . F 4 HOH F 18 518 58 HOH HOH . F 4 HOH F 19 519 54 HOH HOH . F 4 HOH F 20 520 19 HOH HOH . F 4 HOH F 21 521 71 HOH HOH . F 4 HOH F 22 522 1 HOH HOH . F 4 HOH F 23 523 8 HOH HOH . F 4 HOH F 24 524 3 HOH HOH . F 4 HOH F 25 525 31 HOH HOH . F 4 HOH F 26 526 20 HOH HOH . F 4 HOH F 27 527 51 HOH HOH . F 4 HOH F 28 528 18 HOH HOH . F 4 HOH F 29 529 17 HOH HOH . F 4 HOH F 30 530 63 HOH HOH . F 4 HOH F 31 531 28 HOH HOH . F 4 HOH F 32 532 4 HOH HOH . F 4 HOH F 33 533 59 HOH HOH . F 4 HOH F 34 534 65 HOH HOH . F 4 HOH F 35 535 67 HOH HOH . F 4 HOH F 36 536 5 HOH HOH . F 4 HOH F 37 537 37 HOH HOH . F 4 HOH F 38 538 72 HOH HOH . F 4 HOH F 39 539 32 HOH HOH . F 4 HOH F 40 540 10 HOH HOH . F 4 HOH F 41 541 70 HOH HOH . F 4 HOH F 42 542 41 HOH HOH . F 4 HOH F 43 543 29 HOH HOH . F 4 HOH F 44 544 60 HOH HOH . F 4 HOH F 45 545 24 HOH HOH . F 4 HOH F 46 546 15 HOH HOH . F 4 HOH F 47 547 23 HOH HOH . F 4 HOH F 48 548 2 HOH HOH . F 4 HOH F 49 549 35 HOH HOH . F 4 HOH F 50 550 21 HOH HOH . F 4 HOH F 51 551 66 HOH HOH . F 4 HOH F 52 552 38 HOH HOH . F 4 HOH F 53 553 12 HOH HOH . F 4 HOH F 54 554 43 HOH HOH . F 4 HOH F 55 555 25 HOH HOH . F 4 HOH F 56 556 13 HOH HOH . F 4 HOH F 57 557 56 HOH HOH . F 4 HOH F 58 558 30 HOH HOH . F 4 HOH F 59 559 42 HOH HOH . F 4 HOH F 60 560 47 HOH HOH . F 4 HOH F 61 561 53 HOH HOH . F 4 HOH F 62 562 62 HOH HOH . F 4 HOH F 63 563 68 HOH HOH . F 4 HOH F 64 564 36 HOH HOH . F 4 HOH F 65 565 48 HOH HOH . F 4 HOH F 66 566 69 HOH HOH . F 4 HOH F 67 567 46 HOH HOH . F 4 HOH F 68 568 45 HOH HOH . F 4 HOH F 69 569 64 HOH HOH . F 4 HOH F 70 570 44 HOH HOH . F 4 HOH F 71 571 16 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAP YL6 . . . E 3 -7.219 71.904 36.795 1 116.9 ? CAP YL6 404 F 1 HETATM 2 C CAQ YL6 . . . E 3 -7.435 73.263 36.481 1 111.61 ? CAQ YL6 404 F 1 HETATM 3 CL CL YL6 . . . E 3 -9.042 73.825 35.758 1 100.1 ? CL YL6 404 F 1 HETATM 4 C CAR YL6 . . . E 3 -6.419 74.194 36.707 1 107.1 ? CAR YL6 404 F 1 HETATM 5 C CAW YL6 . . . E 3 -6.616 75.549 36.388 1 99.29 ? CAW YL6 404 F 1 HETATM 6 C CAS YL6 . . . E 3 -5.207 73.738 37.237 1 116.84 ? CAS YL6 404 F 1 HETATM 7 C CAT YL6 . . . E 3 -5.016 72.384 37.558 1 117.9 ? CAT YL6 404 F 1 HETATM 8 C CAO YL6 . . . E 3 -6.009 71.427 37.349 1 120 ? CAO YL6 404 F 1 HETATM 9 C CAM YL6 . . . E 3 -5.819 70.105 37.65 1 125.13 ? CAM YL6 404 F 1 HETATM 10 S SAN YL6 . . . E 3 -7.014 69.009 37.978 1 109.51 ? SAN YL6 404 F 1 HETATM 11 C CAL YL6 . . . E 3 -4.653 69.429 37.713 1 121.96 ? CAL YL6 404 F 1 HETATM 12 C C5 YL6 . . . E 3 -4.713 68.083 38.018 1 124 ? C5 YL6 404 F 1 HETATM 13 C C6 YL6 . . . E 3 -5.997 67.639 38.209 1 126.87 ? C6 YL6 404 F 1 HETATM 14 N N1 YL6 . . . E 3 -6.304 66.335 38.518 1 100.55 ? N1 YL6 404 F 1 HETATM 15 C C2 YL6 . . . E 3 -5.286 65.389 38.665 1 101.51 ? C2 YL6 404 F 1 HETATM 16 N N3 YL6 . . . E 3 -3.966 65.859 38.472 1 119.84 ? N3 YL6 404 F 1 HETATM 17 C C4 YL6 . . . E 3 -3.703 67.166 38.17 1 117.72 ? C4 YL6 404 F 1 HETATM 18 N NAB YL6 . . . E 3 -2.439 67.619 37.959 1 112.35 ? NAB YL6 404 F 1 HETATM 19 C CAC YL6 . . . E 3 -1.138 67.113 38.515 1 98.74 ? CAC YL6 404 F 1 HETATM 20 P PAA YL6 . . . E 3 -0.654 65.832 37.321 1 103.31 ? PAA YL6 404 F 1 HETATM 21 O OAD YL6 . . . E 3 -0.325 66.502 36.007 1 101.05 ? OAD YL6 404 F 1 HETATM 22 O OAU YL6 . . . E 3 0.736 65.193 37.934 1 94.04 ? OAU YL6 404 F 1 HETATM 23 O OAE YL6 . . . E 3 -1.76 64.826 37.343 1 97.33 ? OAE YL6 404 F 1 HETATM 24 C CAV YL6 . . . E 3 -1.144 66.562 39.956 1 91.68 ? CAV YL6 404 F 1 HETATM 25 C CAX YL6 . . . E 3 -1.457 67.506 40.969 1 101.77 ? CAX YL6 404 F 1 HETATM 26 C CAY YL6 . . . E 3 -1.99 68.799 40.757 1 100.85 ? CAY YL6 404 F 1 HETATM 27 C CAZ YL6 . . . E 3 -2.276 69.63 41.85 1 107.09 ? CAZ YL6 404 F 1 HETATM 28 F FBD YL6 . . . E 3 -2.789 70.855 41.623 1 104.66 ? FBD YL6 404 F 1 HETATM 29 C CBA YL6 . . . E 3 -2.047 69.199 43.167 1 103.51 ? CBA YL6 404 F 1 HETATM 30 C CBB YL6 . . . E 3 -1.52 67.92 43.383 1 103.11 ? CBB YL6 404 F 1 HETATM 31 C CBC YL6 . . . E 3 -1.23 67.088 42.293 1 108.16 ? CBC YL6 404 F 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 31 #