data_5JV2 # _model_server_result.job_id Ao5-_LwZ4diuoU-32NYBSg _model_server_result.datetime_utc '2024-11-18 20:44:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5jv2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":405}' # _entry.id 5JV2 # _exptl.entry_id 5JV2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 320.303 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '{[6-(4-methylphenyl)thieno[2,3-d]pyrimidin-5-yl]methyl}phosphonic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5JV2 _cell.length_a 110.41 _cell.length_b 110.41 _cell.length_c 76.27 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5JV2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_665 -y+1,-x+1,-z+1/2 0 -1 0 -1 0 0 0 0 -1 110.41 110.41 38.135 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N # _chem_comp.formula 'C14 H13 N2 O3 P S' _chem_comp.formula_weight 320.303 _chem_comp.id 6O3 _chem_comp.mon_nstd_flag . _chem_comp.name '{[6-(4-methylphenyl)thieno[2,3-d]pyrimidin-5-yl]methyl}phosphonic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OAS PAR 6O3 doub 1 n n OAT PAR 6O3 sing 2 n n OAU PAR 6O3 sing 3 n n PAR CAQ 6O3 sing 4 n n CAQ CAC 6O3 sing 5 n n CAN CAO 6O3 doub 6 n y CAN CAM 6O3 sing 7 n y CAO CAJ 6O3 sing 8 n y CAP CAM 6O3 sing 9 n n C6 N1 6O3 doub 10 n y C6 C5 6O3 sing 11 n y CAM CAL 6O3 doub 12 n y CAC C5 6O3 sing 13 n y CAC CAD 6O3 doub 14 n y N1 C2 6O3 sing 15 n y C5 C4 6O3 doub 16 n y CAJ CAD 6O3 sing 17 n n CAJ CAK 6O3 doub 18 n y CAD SAE 6O3 sing 19 n y CAL CAK 6O3 sing 20 n y C2 N3 6O3 doub 21 n y C4 N3 6O3 sing 22 n y C4 SAE 6O3 sing 23 n y OAT H1 6O3 sing 24 n n OAU H2 6O3 sing 25 n n CAQ H3 6O3 sing 26 n n CAQ H4 6O3 sing 27 n n C6 H5 6O3 sing 28 n n C2 H6 6O3 sing 29 n n CAK H7 6O3 sing 30 n n CAL H8 6O3 sing 31 n n CAP H9 6O3 sing 32 n n CAP H10 6O3 sing 33 n n CAP H11 6O3 sing 34 n n CAN H12 6O3 sing 35 n n CAO H13 6O3 sing 36 n n # _atom_sites.entry_id 5JV2 _atom_sites.fract_transf_matrix[1][1] 0.009057 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009057 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013111 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PO4 F 1 401 1 PO4 PO4 . C 3 CL F 1 402 1 CL CL . D 3 CL F 1 403 2 CL CL . E 4 6O3 F 1 404 1 6O3 MT7 . F 4 6O3 F 1 405 2 6O3 MT7 . G 5 HOH F 1 501 98 HOH HOH . G 5 HOH F 2 502 129 HOH HOH . G 5 HOH F 3 503 53 HOH HOH . G 5 HOH F 4 504 55 HOH HOH . G 5 HOH F 5 505 31 HOH HOH . G 5 HOH F 6 506 51 HOH HOH . G 5 HOH F 7 507 16 HOH HOH . G 5 HOH F 8 508 8 HOH HOH . G 5 HOH F 9 509 86 HOH HOH . G 5 HOH F 10 510 12 HOH HOH . G 5 HOH F 11 511 119 HOH HOH . G 5 HOH F 12 512 24 HOH HOH . G 5 HOH F 13 513 45 HOH HOH . G 5 HOH F 14 514 135 HOH HOH . G 5 HOH F 15 515 59 HOH HOH . G 5 HOH F 16 516 23 HOH HOH . G 5 HOH F 17 517 64 HOH HOH . G 5 HOH F 18 518 89 HOH HOH . G 5 HOH F 19 519 3 HOH HOH . G 5 HOH F 20 520 131 HOH HOH . G 5 HOH F 21 521 6 HOH HOH . G 5 HOH F 22 522 19 HOH HOH . G 5 HOH F 23 523 36 HOH HOH . G 5 HOH F 24 524 127 HOH HOH . G 5 HOH F 25 525 83 HOH HOH . G 5 HOH F 26 526 125 HOH HOH . G 5 HOH F 27 527 49 HOH HOH . G 5 HOH F 28 528 75 HOH HOH . G 5 HOH F 29 529 112 HOH HOH . G 5 HOH F 30 530 11 HOH HOH . G 5 HOH F 31 531 91 HOH HOH . G 5 HOH F 32 532 27 HOH HOH . G 5 HOH F 33 533 103 HOH HOH . G 5 HOH F 34 534 15 HOH HOH . G 5 HOH F 35 535 76 HOH HOH . G 5 HOH F 36 536 4 HOH HOH . G 5 HOH F 37 537 41 HOH HOH . G 5 HOH F 38 538 77 HOH HOH . G 5 HOH F 39 539 40 HOH HOH . G 5 HOH F 40 540 22 HOH HOH . G 5 HOH F 41 541 37 HOH HOH . G 5 HOH F 42 542 73 HOH HOH . G 5 HOH F 43 543 90 HOH HOH . G 5 HOH F 44 544 25 HOH HOH . G 5 HOH F 45 545 39 HOH HOH . G 5 HOH F 46 546 42 HOH HOH . G 5 HOH F 47 547 111 HOH HOH . G 5 HOH F 48 548 56 HOH HOH . G 5 HOH F 49 549 52 HOH HOH . G 5 HOH F 50 550 35 HOH HOH . G 5 HOH F 51 551 14 HOH HOH . G 5 HOH F 52 552 138 HOH HOH . G 5 HOH F 53 553 67 HOH HOH . G 5 HOH F 54 554 33 HOH HOH . G 5 HOH F 55 555 48 HOH HOH . G 5 HOH F 56 556 85 HOH HOH . G 5 HOH F 57 557 58 HOH HOH . G 5 HOH F 58 558 5 HOH HOH . G 5 HOH F 59 559 88 HOH HOH . G 5 HOH F 60 560 7 HOH HOH . G 5 HOH F 61 561 50 HOH HOH . G 5 HOH F 62 562 124 HOH HOH . G 5 HOH F 63 563 21 HOH HOH . G 5 HOH F 64 564 62 HOH HOH . G 5 HOH F 65 565 17 HOH HOH . G 5 HOH F 66 566 78 HOH HOH . G 5 HOH F 67 567 43 HOH HOH . G 5 HOH F 68 568 60 HOH HOH . G 5 HOH F 69 569 57 HOH HOH . G 5 HOH F 70 570 38 HOH HOH . G 5 HOH F 71 571 134 HOH HOH . G 5 HOH F 72 572 122 HOH HOH . G 5 HOH F 73 573 18 HOH HOH . G 5 HOH F 74 574 106 HOH HOH . G 5 HOH F 75 575 123 HOH HOH . G 5 HOH F 76 576 61 HOH HOH . G 5 HOH F 77 577 97 HOH HOH . G 5 HOH F 78 578 80 HOH HOH . G 5 HOH F 79 579 87 HOH HOH . G 5 HOH F 80 580 10 HOH HOH . G 5 HOH F 81 581 84 HOH HOH . G 5 HOH F 82 582 82 HOH HOH . G 5 HOH F 83 583 32 HOH HOH . G 5 HOH F 84 584 20 HOH HOH . G 5 HOH F 85 585 79 HOH HOH . G 5 HOH F 86 586 120 HOH HOH . G 5 HOH F 87 587 99 HOH HOH . G 5 HOH F 88 588 114 HOH HOH . G 5 HOH F 89 589 47 HOH HOH . G 5 HOH F 90 590 68 HOH HOH . G 5 HOH F 91 591 101 HOH HOH . G 5 HOH F 92 592 121 HOH HOH . G 5 HOH F 93 593 26 HOH HOH . G 5 HOH F 94 594 95 HOH HOH . G 5 HOH F 95 595 71 HOH HOH . G 5 HOH F 96 596 13 HOH HOH . G 5 HOH F 97 597 133 HOH HOH . G 5 HOH F 98 598 130 HOH HOH . G 5 HOH F 99 599 9 HOH HOH . G 5 HOH F 100 600 105 HOH HOH . G 5 HOH F 101 601 34 HOH HOH . G 5 HOH F 102 602 2 HOH HOH . G 5 HOH F 103 603 115 HOH HOH . G 5 HOH F 104 604 65 HOH HOH . G 5 HOH F 105 605 116 HOH HOH . G 5 HOH F 106 606 136 HOH HOH . G 5 HOH F 107 607 110 HOH HOH . G 5 HOH F 108 608 132 HOH HOH . G 5 HOH F 109 609 74 HOH HOH . G 5 HOH F 110 610 46 HOH HOH . G 5 HOH F 111 611 28 HOH HOH . G 5 HOH F 112 612 137 HOH HOH . G 5 HOH F 113 613 81 HOH HOH . G 5 HOH F 114 614 70 HOH HOH . G 5 HOH F 115 615 118 HOH HOH . G 5 HOH F 116 616 126 HOH HOH . G 5 HOH F 117 617 107 HOH HOH . G 5 HOH F 118 618 94 HOH HOH . G 5 HOH F 119 619 54 HOH HOH . G 5 HOH F 120 620 113 HOH HOH . G 5 HOH F 121 621 117 HOH HOH . G 5 HOH F 122 622 63 HOH HOH . G 5 HOH F 123 623 104 HOH HOH . G 5 HOH F 124 624 69 HOH HOH . G 5 HOH F 125 625 29 HOH HOH . G 5 HOH F 126 626 102 HOH HOH . G 5 HOH F 127 627 93 HOH HOH . G 5 HOH F 128 628 72 HOH HOH . G 5 HOH F 129 629 128 HOH HOH . G 5 HOH F 130 630 100 HOH HOH . G 5 HOH F 131 631 96 HOH HOH . G 5 HOH F 132 632 30 HOH HOH . G 5 HOH F 133 633 109 HOH HOH . G 5 HOH F 134 634 44 HOH HOH . G 5 HOH F 135 635 66 HOH HOH . G 5 HOH F 136 636 108 HOH HOH . G 5 HOH F 137 637 92 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OAS 6O3 . . . F 4 -7.978 68.688 39.228 1 78.05 ? OAS 6O3 405 F 1 HETATM 2 P PAR 6O3 . . . F 4 -8.7 69.586 40.436 1 92.54 ? PAR 6O3 405 F 1 HETATM 3 O OAT 6O3 . . . F 4 -10.096 70.029 39.665 1 91.19 ? OAT 6O3 405 F 1 HETATM 4 O OAU 6O3 . . . F 4 -8.884 68.917 41.78 1 97.23 ? OAU 6O3 405 F 1 HETATM 5 C CAQ 6O3 . . . F 4 -7.866 71.227 40.707 1 90.92 ? CAQ 6O3 405 F 1 HETATM 6 C CAC 6O3 . . . F 4 -6.411 71.074 40.111 1 93.7 ? CAC 6O3 405 F 1 HETATM 7 C C5 6O3 . . . F 4 -5.39 70.512 40.874 1 94.12 ? C5 6O3 405 F 1 HETATM 8 C C6 6O3 . . . F 4 -5.417 70.022 42.147 1 95.81 ? C6 6O3 405 F 1 HETATM 9 N N1 6O3 . . . F 4 -4.262 69.485 42.783 1 96.76 ? N1 6O3 405 F 1 HETATM 10 C C2 6O3 . . . F 4 -3.038 69.436 42.08 1 88 ? C2 6O3 405 F 1 HETATM 11 N N3 6O3 . . . F 4 -3.046 69.941 40.769 1 94.9 ? N3 6O3 405 F 1 HETATM 12 C C4 6O3 . . . F 4 -4.189 70.458 40.21 1 99 ? C4 6O3 405 F 1 HETATM 13 S SAE 6O3 . . . F 4 -4.453 71.136 38.617 1 90.46 ? SAE 6O3 405 F 1 HETATM 14 C CAD 6O3 . . . F 4 -6.085 71.463 38.82 1 93.1 ? CAD 6O3 405 F 1 HETATM 15 C CAJ 6O3 . . . F 4 -6.82 72.13 37.864 1 82.26 ? CAJ 6O3 405 F 1 HETATM 16 C CAK 6O3 . . . F 4 -8.08 71.767 37.346 1 80.62 ? CAK 6O3 405 F 1 HETATM 17 C CAL 6O3 . . . F 4 -8.724 72.591 36.396 1 73.49 ? CAL 6O3 405 F 1 HETATM 18 C CAM 6O3 . . . F 4 -8.158 73.806 35.947 1 79.02 ? CAM 6O3 405 F 1 HETATM 19 C CAP 6O3 . . . F 4 -8.82 74.615 35 1 73.07 ? CAP 6O3 405 F 1 HETATM 20 C CAN 6O3 . . . F 4 -6.913 74.196 36.465 1 77.99 ? CAN 6O3 405 F 1 HETATM 21 C CAO 6O3 . . . F 4 -6.289 73.372 37.405 1 78.11 ? CAO 6O3 405 F 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 231 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 21 #