data_5JV5
#
_model_server_result.job_id            yJPrL8Uwx4a519gv0nieBw 
_model_server_result.datetime_utc      '2024-12-25 17:53:30' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5jv5 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":301}' 
#
_entry.id    5JV5 
#
_exptl.entry_id    5JV5 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              363.221 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "GUANOSINE-5'-MONOPHOSPHATE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5JV5 
_cell.length_a            93.944 
_cell.length_b            111.711 
_cell.length_c            45.226 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5JV5 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 H N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASP 179 A ASP 173 1_555 G MG MG . A MG 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.163 ? 
metalc ? metalc2 C O3' 5GP . A 5GP 301 1_555 F MG MG . A MG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.459 ? 
metalc ? metalc3 E O1 SO4 . A SO4 303 1_555 F MG MG . A MG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.988 ? 
metalc ? metalc4 E O3 SO4 . A SO4 303 1_555 G MG MG . A MG 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.665 ? 
metalc ? metalc5 G MG MG . A MG 305 1_555 M O HOH . A HOH 420 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.154 ? 
metalc ? metalc6 B OD1 ASP 179 B ASP 173 1_555 K MG MG . B MG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.276 ? 
metalc ? metalc7 H O3' 5GP . B 5GP 301 1_555 L MG MG . B MG 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? 
metalc ? metalc8 J O2 SO4 . B SO4 303 1_555 L MG MG . B MG 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.948 ? 
#
_chem_comp.formula           'C10 H14 N5 O8 P' 
_chem_comp.formula_weight    363.221 
_chem_comp.id                5GP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "GUANOSINE-5'-MONOPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P O1P 5GP doub 1 n n 
P O2P 5GP sing 2 n n 
P O3P 5GP sing 3 n n 
P O5' 5GP sing 4 n n 
O2P HOP2 5GP sing 5 n n 
O3P HOP3 5GP sing 6 n n 
O5' C5' 5GP sing 7 n n 
C5' C4' 5GP sing 8 n n 
C5' "H5'1" 5GP sing 9 n n 
C5' "H5'2" 5GP sing 10 n n 
C4' O4' 5GP sing 11 n n 
C4' C3' 5GP sing 12 n n 
C4' H4' 5GP sing 13 n n 
O4' C1' 5GP sing 14 n n 
C3' O3' 5GP sing 15 n n 
C3' C2' 5GP sing 16 n n 
C3' H3' 5GP sing 17 n n 
O3' HO3' 5GP sing 18 n n 
C2' O2' 5GP sing 19 n n 
C2' C1' 5GP sing 20 n n 
C2' H2' 5GP sing 21 n n 
O2' HO2' 5GP sing 22 n n 
C1' N9 5GP sing 23 n n 
C1' H1' 5GP sing 24 n n 
N9 C8 5GP sing 25 n y 
N9 C4 5GP sing 26 n y 
C8 N7 5GP doub 27 n y 
C8 H8 5GP sing 28 n n 
N7 C5 5GP sing 29 n y 
C5 C6 5GP sing 30 n n 
C5 C4 5GP doub 31 n y 
C6 O6 5GP doub 32 n n 
C6 N1 5GP sing 33 n n 
N1 C2 5GP sing 34 n n 
N1 HN1 5GP sing 35 n n 
C2 N2 5GP sing 36 n n 
C2 N3 5GP doub 37 n n 
N2 HN21 5GP sing 38 n n 
N2 HN22 5GP sing 39 n n 
N3 C4 5GP sing 40 n n 
#
_atom_sites.entry_id                     5JV5 
_atom_sites.fract_transf_matrix[1][1]    0.010645 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008952 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.022111 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 5GP A 1 301 302 5GP 5GP . 
D 3 SO4 A 1 302 1 SO4 SO4 . 
E 3 SO4 A 1 303 3 SO4 SO4 . 
F 4 MG A 1 304 2 MG MG . 
G 4 MG A 1 305 5 MG MG . 
H 2 5GP B 1 301 303 5GP 5GP . 
I 3 SO4 B 1 302 2 SO4 SO4 . 
J 3 SO4 B 1 303 4 SO4 SO4 . 
K 4 MG B 1 304 3 MG MG . 
L 4 MG B 1 305 4 MG MG . 
M 5 HOH A 1 401 99 HOH HOH . 
M 5 HOH A 2 402 100 HOH HOH . 
M 5 HOH A 3 403 98 HOH HOH . 
M 5 HOH A 4 404 81 HOH HOH . 
M 5 HOH A 5 405 17 HOH HOH . 
M 5 HOH A 6 406 86 HOH HOH . 
M 5 HOH A 7 407 76 HOH HOH . 
M 5 HOH A 8 408 79 HOH HOH . 
M 5 HOH A 9 409 59 HOH HOH . 
M 5 HOH A 10 410 5 HOH HOH . 
M 5 HOH A 11 411 65 HOH HOH . 
M 5 HOH A 12 412 24 HOH HOH . 
M 5 HOH A 13 413 50 HOH HOH . 
M 5 HOH A 14 414 44 HOH HOH . 
M 5 HOH A 15 415 64 HOH HOH . 
M 5 HOH A 16 416 63 HOH HOH . 
M 5 HOH A 17 417 89 HOH HOH . 
M 5 HOH A 18 418 87 HOH HOH . 
M 5 HOH A 19 419 95 HOH HOH . 
M 5 HOH A 20 420 101 HOH HOH . 
M 5 HOH A 21 421 84 HOH HOH . 
M 5 HOH A 22 422 53 HOH HOH . 
M 5 HOH A 23 423 90 HOH HOH . 
N 5 HOH B 1 401 69 HOH HOH . 
N 5 HOH B 2 402 22 HOH HOH . 
N 5 HOH B 3 403 77 HOH HOH . 
N 5 HOH B 4 404 2 HOH HOH . 
N 5 HOH B 5 405 56 HOH HOH . 
N 5 HOH B 6 406 16 HOH HOH . 
N 5 HOH B 7 407 78 HOH HOH . 
N 5 HOH B 8 408 91 HOH HOH . 
N 5 HOH B 9 409 74 HOH HOH . 
N 5 HOH B 10 410 66 HOH HOH . 
N 5 HOH B 11 411 47 HOH HOH . 
N 5 HOH B 12 412 10 HOH HOH . 
N 5 HOH B 13 413 28 HOH HOH . 
N 5 HOH B 14 414 88 HOH HOH . 
N 5 HOH B 15 415 93 HOH HOH . 
N 5 HOH B 16 416 96 HOH HOH . 
N 5 HOH B 17 417 31 HOH HOH . 
N 5 HOH B 18 418 71 HOH HOH . 
N 5 HOH B 19 419 23 HOH HOH . 
N 5 HOH B 20 420 85 HOH HOH . 
N 5 HOH B 21 421 54 HOH HOH . 
N 5 HOH B 22 422 25 HOH HOH . 
N 5 HOH B 23 423 62 HOH HOH . 
N 5 HOH B 24 424 29 HOH HOH . 
N 5 HOH B 25 425 68 HOH HOH . 
N 5 HOH B 26 426 92 HOH HOH . 
N 5 HOH B 27 427 15 HOH HOH . 
N 5 HOH B 28 428 75 HOH HOH . 
N 5 HOH B 29 429 34 HOH HOH . 
N 5 HOH B 30 430 60 HOH HOH . 
N 5 HOH B 31 431 72 HOH HOH . 
N 5 HOH B 32 432 38 HOH HOH . 
N 5 HOH B 33 433 57 HOH HOH . 
N 5 HOH B 34 434 94 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P 5GP . . . H 2 -11.003 34.693 4.867 1 68.08 ? P 5GP 301 B 1 
HETATM 2 O O1P 5GP . . . H 2 -10.299 34.283 3.593 1 68.27 ? O1P 5GP 301 B 1 
HETATM 3 O O2P 5GP . . . H 2 -12.447 34.258 4.967 1 69.21 -1 O2P 5GP 301 B 1 
HETATM 4 O O3P 5GP . . . H 2 -10.766 36.129 5.275 1 67.84 ? O3P 5GP 301 B 1 
HETATM 5 O O5' 5GP . . . H 2 -10.255 33.862 6.004 1 64.18 ? O5' 5GP 301 B 1 
HETATM 6 C C5' 5GP . . . H 2 -9.859 32.51 5.794 1 59.64 ? C5' 5GP 301 B 1 
HETATM 7 C C4' 5GP . . . H 2 -8.513 32.232 6.42 1 55.82 ? C4' 5GP 301 B 1 
HETATM 8 O O4' 5GP . . . H 2 -8.55 32.629 7.818 1 53.41 ? O4' 5GP 301 B 1 
HETATM 9 C C3' 5GP . . . H 2 -8.065 30.773 6.403 1 54.57 ? C3' 5GP 301 B 1 
HETATM 10 O O3' 5GP . . . H 2 -6.644 30.716 6.274 1 54.24 ? O3' 5GP 301 B 1 
HETATM 11 C C2' 5GP . . . H 2 -8.468 30.283 7.79 1 52.44 ? C2' 5GP 301 B 1 
HETATM 12 O O2' 5GP . . . H 2 -7.731 29.172 8.256 1 50.96 ? O2' 5GP 301 B 1 
HETATM 13 C C1' 5GP . . . H 2 -8.216 31.526 8.639 1 51.25 ? C1' 5GP 301 B 1 
HETATM 14 N N9 5GP . . . H 2 -9.043 31.6 9.846 1 48.9 ? N9 5GP 301 B 1 
HETATM 15 C C8 5GP . . . H 2 -10.209 30.968 10.041 1 48.39 ? C8 5GP 301 B 1 
HETATM 16 N N7 5GP . . . H 2 -10.681 31.282 11.269 1 47.66 ? N7 5GP 301 B 1 
HETATM 17 C C5 5GP . . . H 2 -9.799 32.125 11.842 1 46.59 ? C5 5GP 301 B 1 
HETATM 18 C C6 5GP . . . H 2 -9.753 32.766 13.073 1 45.48 ? C6 5GP 301 B 1 
HETATM 19 O O6 5GP . . . H 2 -10.671 32.602 13.906 1 44.42 ? O6 5GP 301 B 1 
HETATM 20 N N1 5GP . . . H 2 -8.716 33.561 13.36 1 45.67 ? N1 5GP 301 B 1 
HETATM 21 C C2 5GP . . . H 2 -7.722 33.749 12.48 1 44.1 ? C2 5GP 301 B 1 
HETATM 22 N N2 5GP . . . H 2 -6.689 34.564 12.805 1 42.7 ? N2 5GP 301 B 1 
HETATM 23 N N3 5GP . . . H 2 -7.739 33.139 11.274 1 45.02 ? N3 5GP 301 B 1 
HETATM 24 C C4 5GP . . . H 2 -8.769 32.324 10.939 1 46.91 ? C4 5GP 301 B 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           283 
_model_server_stats.encode_time_ms          25 
_model_server_stats.element_count           24 
#