data_5JV5 # _model_server_result.job_id E0kdA9OtHqgfmnvXPOu4_A _model_server_result.datetime_utc '2024-12-25 17:43:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5jv5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":302}' # _entry.id 5JV5 # _exptl.entry_id 5JV5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5JV5 _cell.length_a 93.944 _cell.length_b 111.711 _cell.length_c 45.226 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5JV5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 I N N ? 3 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 179 A ASP 173 1_555 G MG MG . A MG 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.163 ? metalc ? metalc2 C O3' 5GP . A 5GP 301 1_555 F MG MG . A MG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.459 ? metalc ? metalc3 E O1 SO4 . A SO4 303 1_555 F MG MG . A MG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.988 ? metalc ? metalc4 E O3 SO4 . A SO4 303 1_555 G MG MG . A MG 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.665 ? metalc ? metalc5 G MG MG . A MG 305 1_555 M O HOH . A HOH 420 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.154 ? metalc ? metalc6 B OD1 ASP 179 B ASP 173 1_555 K MG MG . B MG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.276 ? metalc ? metalc7 H O3' 5GP . B 5GP 301 1_555 L MG MG . B MG 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? metalc ? metalc8 J O2 SO4 . B SO4 303 1_555 L MG MG . B MG 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.948 ? # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1 SO4 doub 330 n n S O2 SO4 doub 331 n n S O3 SO4 sing 332 n n S O4 SO4 sing 333 n n # _atom_sites.entry_id 5JV5 _atom_sites.fract_transf_matrix[1][1] 0.010645 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008952 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022111 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 5GP A 1 301 302 5GP 5GP . D 3 SO4 A 1 302 1 SO4 SO4 . E 3 SO4 A 1 303 3 SO4 SO4 . F 4 MG A 1 304 2 MG MG . G 4 MG A 1 305 5 MG MG . H 2 5GP B 1 301 303 5GP 5GP . I 3 SO4 B 1 302 2 SO4 SO4 . J 3 SO4 B 1 303 4 SO4 SO4 . K 4 MG B 1 304 3 MG MG . L 4 MG B 1 305 4 MG MG . M 5 HOH A 1 401 99 HOH HOH . M 5 HOH A 2 402 100 HOH HOH . M 5 HOH A 3 403 98 HOH HOH . M 5 HOH A 4 404 81 HOH HOH . M 5 HOH A 5 405 17 HOH HOH . M 5 HOH A 6 406 86 HOH HOH . M 5 HOH A 7 407 76 HOH HOH . M 5 HOH A 8 408 79 HOH HOH . M 5 HOH A 9 409 59 HOH HOH . M 5 HOH A 10 410 5 HOH HOH . M 5 HOH A 11 411 65 HOH HOH . M 5 HOH A 12 412 24 HOH HOH . M 5 HOH A 13 413 50 HOH HOH . M 5 HOH A 14 414 44 HOH HOH . M 5 HOH A 15 415 64 HOH HOH . M 5 HOH A 16 416 63 HOH HOH . M 5 HOH A 17 417 89 HOH HOH . M 5 HOH A 18 418 87 HOH HOH . M 5 HOH A 19 419 95 HOH HOH . M 5 HOH A 20 420 101 HOH HOH . M 5 HOH A 21 421 84 HOH HOH . M 5 HOH A 22 422 53 HOH HOH . M 5 HOH A 23 423 90 HOH HOH . N 5 HOH B 1 401 69 HOH HOH . N 5 HOH B 2 402 22 HOH HOH . N 5 HOH B 3 403 77 HOH HOH . N 5 HOH B 4 404 2 HOH HOH . N 5 HOH B 5 405 56 HOH HOH . N 5 HOH B 6 406 16 HOH HOH . N 5 HOH B 7 407 78 HOH HOH . N 5 HOH B 8 408 91 HOH HOH . N 5 HOH B 9 409 74 HOH HOH . N 5 HOH B 10 410 66 HOH HOH . N 5 HOH B 11 411 47 HOH HOH . N 5 HOH B 12 412 10 HOH HOH . N 5 HOH B 13 413 28 HOH HOH . N 5 HOH B 14 414 88 HOH HOH . N 5 HOH B 15 415 93 HOH HOH . N 5 HOH B 16 416 96 HOH HOH . N 5 HOH B 17 417 31 HOH HOH . N 5 HOH B 18 418 71 HOH HOH . N 5 HOH B 19 419 23 HOH HOH . N 5 HOH B 20 420 85 HOH HOH . N 5 HOH B 21 421 54 HOH HOH . N 5 HOH B 22 422 25 HOH HOH . N 5 HOH B 23 423 62 HOH HOH . N 5 HOH B 24 424 29 HOH HOH . N 5 HOH B 25 425 68 HOH HOH . N 5 HOH B 26 426 92 HOH HOH . N 5 HOH B 27 427 15 HOH HOH . N 5 HOH B 28 428 75 HOH HOH . N 5 HOH B 29 429 34 HOH HOH . N 5 HOH B 30 430 60 HOH HOH . N 5 HOH B 31 431 72 HOH HOH . N 5 HOH B 32 432 38 HOH HOH . N 5 HOH B 33 433 57 HOH HOH . N 5 HOH B 34 434 94 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . D 3 25.023 29.947 6.11 1 46.47 ? S SO4 302 A 1 HETATM 2 O O1 SO4 . . . D 3 24.579 31.31 5.827 1 44.31 ? O1 SO4 302 A 1 HETATM 3 O O2 SO4 . . . D 3 25.12 29.183 4.868 1 46.46 ? O2 SO4 302 A 1 HETATM 4 O O3 SO4 . . . D 3 24.068 29.298 7.006 1 47.61 ? O3 SO4 302 A 1 HETATM 5 O O4 SO4 . . . D 3 26.332 29.991 6.75 1 46.59 ? O4 SO4 302 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 5 #