data_5JVB # _model_server_result.job_id He3fRHk5qU_3MOxsY_cg2w _model_server_result.datetime_utc '2024-11-28 09:24:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5jvb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":301}' # _entry.id 5JVB # _exptl.entry_id 5JVB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 79.98 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description PHOSPHONATE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 93.07 _cell.angle_gamma 90 _cell.entry_id 5JVB _cell.length_a 54.34 _cell.length_b 69.31 _cell.length_c 66.53 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5JVB _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'H O3 P -2' _chem_comp.formula_weight 79.98 _chem_comp.id 2PO _chem_comp.mon_nstd_flag . _chem_comp.name PHOSPHONATE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P 2PO sing 1 n n P O2P 2PO sing 2 n n P O3P 2PO doub 3 n n P HP 2PO sing 4 n n # _atom_sites.entry_id 5JVB _atom_sites.fract_transf_matrix[1][1] 0.018403 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000987 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014428 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015052 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 2PO A 1 301 2 2PO PI3 . D 2 2PO B 1 301 1 2PO PI3 . E 3 HOH A 1 401 16 HOH HOH . E 3 HOH A 2 402 23 HOH HOH . E 3 HOH A 3 403 1 HOH HOH . E 3 HOH A 4 404 21 HOH HOH . E 3 HOH A 5 405 15 HOH HOH . E 3 HOH A 6 406 22 HOH HOH . E 3 HOH A 7 407 7 HOH HOH . E 3 HOH A 8 408 5 HOH HOH . E 3 HOH A 9 409 18 HOH HOH . E 3 HOH A 10 410 17 HOH HOH . E 3 HOH A 11 411 11 HOH HOH . E 3 HOH A 12 412 13 HOH HOH . E 3 HOH A 13 413 14 HOH HOH . E 3 HOH A 14 414 39 HOH HOH . E 3 HOH A 15 415 12 HOH HOH . E 3 HOH A 16 416 33 HOH HOH . E 3 HOH A 17 417 19 HOH HOH . E 3 HOH A 18 418 41 HOH HOH . E 3 HOH A 19 419 8 HOH HOH . E 3 HOH A 20 420 26 HOH HOH . E 3 HOH A 21 421 34 HOH HOH . E 3 HOH A 22 422 28 HOH HOH . E 3 HOH A 23 423 25 HOH HOH . F 3 HOH B 1 401 9 HOH HOH . F 3 HOH B 2 402 3 HOH HOH . F 3 HOH B 3 403 30 HOH HOH . F 3 HOH B 4 404 2 HOH HOH . F 3 HOH B 5 405 4 HOH HOH . F 3 HOH B 6 406 32 HOH HOH . F 3 HOH B 7 407 31 HOH HOH . F 3 HOH B 8 408 37 HOH HOH . F 3 HOH B 9 409 27 HOH HOH . F 3 HOH B 10 410 35 HOH HOH . F 3 HOH B 11 411 10 HOH HOH . F 3 HOH B 12 412 20 HOH HOH . F 3 HOH B 13 413 29 HOH HOH . F 3 HOH B 14 414 6 HOH HOH . F 3 HOH B 15 415 38 HOH HOH . F 3 HOH B 16 416 24 HOH HOH . F 3 HOH B 17 417 40 HOH HOH . F 3 HOH B 18 418 36 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P 2PO . . . D 2 1.962 5.021 84.351 1 31.26 ? P 2PO 301 B 1 HETATM 2 O O1P 2PO . . . D 2 0.815 4.812 85.356 1 28.28 ? O1P 2PO 301 B 1 HETATM 3 O O2P 2PO . . . D 2 1.807 6.41 83.824 1 31.77 ? O2P 2PO 301 B 1 HETATM 4 O O3P 2PO . . . D 2 3.299 4.99 85.061 1 28.36 ? O3P 2PO 301 B 1 # _model_server_stats.io_time_ms 43 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 248 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 4 #