data_5JVM # _model_server_result.job_id G-1KDBgf61Cjv7yc5cRyFg _model_server_result.datetime_utc '2025-03-26 15:35:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5jvm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":101}' # _entry.id 5JVM # _exptl.entry_id 5JVM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5JVM _cell.length_a 72.074 _cell.length_b 71.979 _cell.length_c 43.142 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5JVM _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 D O HOH . A HOH 142 1_555 C MG MG . B MG 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? metalc ? metalc2 D O HOH . A HOH 171 4_465 C MG MG . B MG 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? metalc ? metalc3 D O HOH . A HOH 218 4_465 C MG MG . B MG 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? metalc ? metalc4 D O HOH . A HOH 222 1_555 C MG MG . B MG 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? metalc ? metalc5 C MG MG . B MG 101 1_555 E O HOH . B HOH 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.112 ? metalc ? metalc6 C MG MG . B MG 101 1_555 E O HOH . B HOH 260 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.189 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5JVM _atom_sites.fract_transf_matrix[1][1] 0.013875 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013893 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.023179 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG B 1 101 1 MG MG . D 3 HOH A 1 101 274 HOH HOH . D 3 HOH A 2 102 11 HOH HOH . D 3 HOH A 3 103 238 HOH HOH . D 3 HOH A 4 104 218 HOH HOH . D 3 HOH A 5 105 231 HOH HOH . D 3 HOH A 6 106 251 HOH HOH . D 3 HOH A 7 107 170 HOH HOH . D 3 HOH A 8 108 194 HOH HOH . D 3 HOH A 9 109 72 HOH HOH . D 3 HOH A 10 110 73 HOH HOH . D 3 HOH A 11 111 85 HOH HOH . D 3 HOH A 12 112 258 HOH HOH . D 3 HOH A 13 113 120 HOH HOH . D 3 HOH A 14 114 62 HOH HOH . D 3 HOH A 15 115 35 HOH HOH . D 3 HOH A 16 116 124 HOH HOH . D 3 HOH A 17 117 78 HOH HOH . D 3 HOH A 18 118 90 HOH HOH . D 3 HOH A 19 119 163 HOH HOH . D 3 HOH A 20 120 81 HOH HOH . D 3 HOH A 21 121 139 HOH HOH . D 3 HOH A 22 122 254 HOH HOH . D 3 HOH A 23 123 200 HOH HOH . D 3 HOH A 24 124 97 HOH HOH . D 3 HOH A 25 125 135 HOH HOH . D 3 HOH A 26 126 104 HOH HOH . D 3 HOH A 27 127 213 HOH HOH . D 3 HOH A 28 128 155 HOH HOH . D 3 HOH A 29 129 107 HOH HOH . D 3 HOH A 30 130 214 HOH HOH . D 3 HOH A 31 131 122 HOH HOH . D 3 HOH A 32 132 63 HOH HOH . D 3 HOH A 33 133 6 HOH HOH . D 3 HOH A 34 134 113 HOH HOH . D 3 HOH A 35 135 47 HOH HOH . D 3 HOH A 36 136 233 HOH HOH . D 3 HOH A 37 137 249 HOH HOH . D 3 HOH A 38 138 154 HOH HOH . D 3 HOH A 39 139 36 HOH HOH . D 3 HOH A 40 140 4 HOH HOH . D 3 HOH A 41 141 1 HOH HOH . D 3 HOH A 42 142 149 HOH HOH . D 3 HOH A 43 143 92 HOH HOH . D 3 HOH A 44 144 136 HOH HOH . D 3 HOH A 45 145 28 HOH HOH . D 3 HOH A 46 146 5 HOH HOH . D 3 HOH A 47 147 71 HOH HOH . D 3 HOH A 48 148 175 HOH HOH . D 3 HOH A 49 149 80 HOH HOH . D 3 HOH A 50 150 202 HOH HOH . D 3 HOH A 51 151 21 HOH HOH . D 3 HOH A 52 152 152 HOH HOH . D 3 HOH A 53 153 12 HOH HOH . D 3 HOH A 54 154 55 HOH HOH . D 3 HOH A 55 155 26 HOH HOH . D 3 HOH A 56 156 171 HOH HOH . D 3 HOH A 57 157 43 HOH HOH . D 3 HOH A 58 158 180 HOH HOH . D 3 HOH A 59 159 38 HOH HOH . D 3 HOH A 60 160 212 HOH HOH . D 3 HOH A 61 161 88 HOH HOH . D 3 HOH A 62 162 153 HOH HOH . D 3 HOH A 63 163 137 HOH HOH . D 3 HOH A 64 164 33 HOH HOH . D 3 HOH A 65 165 250 HOH HOH . D 3 HOH A 66 166 176 HOH HOH . D 3 HOH A 67 167 3 HOH HOH . D 3 HOH A 68 168 41 HOH HOH . D 3 HOH A 69 169 84 HOH HOH . D 3 HOH A 70 170 166 HOH HOH . D 3 HOH A 71 171 174 HOH HOH . D 3 HOH A 72 172 45 HOH HOH . D 3 HOH A 73 173 8 HOH HOH . D 3 HOH A 74 174 208 HOH HOH . D 3 HOH A 75 175 99 HOH HOH . D 3 HOH A 76 176 126 HOH HOH . D 3 HOH A 77 177 159 HOH HOH . D 3 HOH A 78 178 192 HOH HOH . D 3 HOH A 79 179 25 HOH HOH . D 3 HOH A 80 180 201 HOH HOH . D 3 HOH A 81 181 44 HOH HOH . D 3 HOH A 82 182 87 HOH HOH . D 3 HOH A 83 183 112 HOH HOH . D 3 HOH A 84 184 131 HOH HOH . D 3 HOH A 85 185 75 HOH HOH . D 3 HOH A 86 186 262 HOH HOH . D 3 HOH A 87 187 219 HOH HOH . D 3 HOH A 88 188 17 HOH HOH . D 3 HOH A 89 189 64 HOH HOH . D 3 HOH A 90 190 56 HOH HOH . D 3 HOH A 91 191 40 HOH HOH . D 3 HOH A 92 192 222 HOH HOH . D 3 HOH A 93 193 60 HOH HOH . D 3 HOH A 94 194 263 HOH HOH . D 3 HOH A 95 195 211 HOH HOH . D 3 HOH A 96 196 157 HOH HOH . D 3 HOH A 97 197 253 HOH HOH . D 3 HOH A 98 198 264 HOH HOH . D 3 HOH A 99 199 268 HOH HOH . D 3 HOH A 100 200 20 HOH HOH . D 3 HOH A 101 201 13 HOH HOH . D 3 HOH A 102 202 269 HOH HOH . D 3 HOH A 103 203 46 HOH HOH . D 3 HOH A 104 204 89 HOH HOH . D 3 HOH A 105 205 189 HOH HOH . D 3 HOH A 106 206 146 HOH HOH . D 3 HOH A 107 207 58 HOH HOH . D 3 HOH A 108 208 188 HOH HOH . D 3 HOH A 109 209 70 HOH HOH . D 3 HOH A 110 210 142 HOH HOH . D 3 HOH A 111 211 228 HOH HOH . D 3 HOH A 112 212 220 HOH HOH . D 3 HOH A 113 213 183 HOH HOH . D 3 HOH A 114 214 127 HOH HOH . D 3 HOH A 115 215 232 HOH HOH . D 3 HOH A 116 216 209 HOH HOH . D 3 HOH A 117 217 95 HOH HOH . D 3 HOH A 118 218 150 HOH HOH . D 3 HOH A 119 219 245 HOH HOH . D 3 HOH A 120 220 59 HOH HOH . D 3 HOH A 121 221 83 HOH HOH . D 3 HOH A 122 222 148 HOH HOH . D 3 HOH A 123 223 65 HOH HOH . D 3 HOH A 124 224 230 HOH HOH . D 3 HOH A 125 225 185 HOH HOH . D 3 HOH A 126 226 265 HOH HOH . D 3 HOH A 127 227 198 HOH HOH . D 3 HOH A 128 228 255 HOH HOH . D 3 HOH A 129 229 210 HOH HOH . D 3 HOH A 130 230 141 HOH HOH . D 3 HOH A 131 231 52 HOH HOH . D 3 HOH A 132 232 19 HOH HOH . D 3 HOH A 133 233 74 HOH HOH . D 3 HOH A 134 234 29 HOH HOH . D 3 HOH A 135 235 225 HOH HOH . D 3 HOH A 136 236 229 HOH HOH . D 3 HOH A 137 237 206 HOH HOH . D 3 HOH A 138 238 129 HOH HOH . D 3 HOH A 139 239 172 HOH HOH . D 3 HOH A 140 240 191 HOH HOH . D 3 HOH A 141 241 164 HOH HOH . D 3 HOH A 142 242 205 HOH HOH . D 3 HOH A 143 243 39 HOH HOH . D 3 HOH A 144 244 147 HOH HOH . D 3 HOH A 145 245 7 HOH HOH . D 3 HOH A 146 246 266 HOH HOH . D 3 HOH A 147 247 276 HOH HOH . D 3 HOH A 148 248 195 HOH HOH . D 3 HOH A 149 249 178 HOH HOH . D 3 HOH A 150 250 145 HOH HOH . D 3 HOH A 151 251 260 HOH HOH . D 3 HOH A 152 252 179 HOH HOH . D 3 HOH A 153 253 235 HOH HOH . D 3 HOH A 154 254 103 HOH HOH . D 3 HOH A 155 255 217 HOH HOH . D 3 HOH A 156 256 77 HOH HOH . D 3 HOH A 157 257 167 HOH HOH . D 3 HOH A 158 258 256 HOH HOH . E 3 HOH B 1 201 169 HOH HOH . E 3 HOH B 2 202 240 HOH HOH . E 3 HOH B 3 203 272 HOH HOH . E 3 HOH B 4 204 130 HOH HOH . E 3 HOH B 5 205 133 HOH HOH . E 3 HOH B 6 206 168 HOH HOH . E 3 HOH B 7 207 102 HOH HOH . E 3 HOH B 8 208 241 HOH HOH . E 3 HOH B 9 209 23 HOH HOH . E 3 HOH B 10 210 162 HOH HOH . E 3 HOH B 11 211 27 HOH HOH . E 3 HOH B 12 212 106 HOH HOH . E 3 HOH B 13 213 42 HOH HOH . E 3 HOH B 14 214 186 HOH HOH . E 3 HOH B 15 215 66 HOH HOH . E 3 HOH B 16 216 114 HOH HOH . E 3 HOH B 17 217 197 HOH HOH . E 3 HOH B 18 218 259 HOH HOH . E 3 HOH B 19 219 271 HOH HOH . E 3 HOH B 20 220 215 HOH HOH . E 3 HOH B 21 221 261 HOH HOH . E 3 HOH B 22 222 30 HOH HOH . E 3 HOH B 23 223 15 HOH HOH . E 3 HOH B 24 224 51 HOH HOH . E 3 HOH B 25 225 108 HOH HOH . E 3 HOH B 26 226 207 HOH HOH . E 3 HOH B 27 227 91 HOH HOH . E 3 HOH B 28 228 193 HOH HOH . E 3 HOH B 29 229 187 HOH HOH . E 3 HOH B 30 230 10 HOH HOH . E 3 HOH B 31 231 116 HOH HOH . E 3 HOH B 32 232 109 HOH HOH . E 3 HOH B 33 233 121 HOH HOH . E 3 HOH B 34 234 49 HOH HOH . E 3 HOH B 35 235 117 HOH HOH . E 3 HOH B 36 236 2 HOH HOH . E 3 HOH B 37 237 14 HOH HOH . E 3 HOH B 38 238 123 HOH HOH . E 3 HOH B 39 239 37 HOH HOH . E 3 HOH B 40 240 18 HOH HOH . E 3 HOH B 41 241 61 HOH HOH . E 3 HOH B 42 242 165 HOH HOH . E 3 HOH B 43 243 9 HOH HOH . E 3 HOH B 44 244 93 HOH HOH . E 3 HOH B 45 245 53 HOH HOH . E 3 HOH B 46 246 67 HOH HOH . E 3 HOH B 47 247 248 HOH HOH . E 3 HOH B 48 248 144 HOH HOH . E 3 HOH B 49 249 24 HOH HOH . E 3 HOH B 50 250 156 HOH HOH . E 3 HOH B 51 251 22 HOH HOH . E 3 HOH B 52 252 196 HOH HOH . E 3 HOH B 53 253 16 HOH HOH . E 3 HOH B 54 254 115 HOH HOH . E 3 HOH B 55 255 177 HOH HOH . E 3 HOH B 56 256 132 HOH HOH . E 3 HOH B 57 257 143 HOH HOH . E 3 HOH B 58 258 118 HOH HOH . E 3 HOH B 59 259 158 HOH HOH . E 3 HOH B 60 260 134 HOH HOH . E 3 HOH B 61 261 79 HOH HOH . E 3 HOH B 62 262 100 HOH HOH . E 3 HOH B 63 263 31 HOH HOH . E 3 HOH B 64 264 94 HOH HOH . E 3 HOH B 65 265 239 HOH HOH . E 3 HOH B 66 266 243 HOH HOH . E 3 HOH B 67 267 242 HOH HOH . E 3 HOH B 68 268 125 HOH HOH . E 3 HOH B 69 269 32 HOH HOH . E 3 HOH B 70 270 105 HOH HOH . E 3 HOH B 71 271 138 HOH HOH . E 3 HOH B 72 272 234 HOH HOH . E 3 HOH B 73 273 247 HOH HOH . E 3 HOH B 74 274 181 HOH HOH . E 3 HOH B 75 275 110 HOH HOH . E 3 HOH B 76 276 246 HOH HOH . E 3 HOH B 77 277 98 HOH HOH . E 3 HOH B 78 278 273 HOH HOH . E 3 HOH B 79 279 237 HOH HOH . E 3 HOH B 80 280 224 HOH HOH . E 3 HOH B 81 281 267 HOH HOH . E 3 HOH B 82 282 76 HOH HOH . E 3 HOH B 83 283 216 HOH HOH . E 3 HOH B 84 284 244 HOH HOH . E 3 HOH B 85 285 50 HOH HOH . E 3 HOH B 86 286 184 HOH HOH . E 3 HOH B 87 287 151 HOH HOH . E 3 HOH B 88 288 227 HOH HOH . E 3 HOH B 89 289 111 HOH HOH . E 3 HOH B 90 290 203 HOH HOH . E 3 HOH B 91 291 54 HOH HOH . E 3 HOH B 92 292 221 HOH HOH . E 3 HOH B 93 293 160 HOH HOH . E 3 HOH B 94 294 86 HOH HOH . E 3 HOH B 95 295 204 HOH HOH . E 3 HOH B 96 296 275 HOH HOH . E 3 HOH B 97 297 48 HOH HOH . E 3 HOH B 98 298 182 HOH HOH . E 3 HOH B 99 299 236 HOH HOH . E 3 HOH B 100 300 82 HOH HOH . E 3 HOH B 101 301 161 HOH HOH . E 3 HOH B 102 302 190 HOH HOH . E 3 HOH B 103 303 68 HOH HOH . E 3 HOH B 104 304 101 HOH HOH . E 3 HOH B 105 305 270 HOH HOH . E 3 HOH B 106 306 252 HOH HOH . E 3 HOH B 107 307 34 HOH HOH . E 3 HOH B 108 308 173 HOH HOH . E 3 HOH B 109 309 140 HOH HOH . E 3 HOH B 110 310 223 HOH HOH . E 3 HOH B 111 311 69 HOH HOH . E 3 HOH B 112 312 57 HOH HOH . E 3 HOH B 113 313 128 HOH HOH . E 3 HOH B 114 314 226 HOH HOH . E 3 HOH B 115 315 199 HOH HOH . E 3 HOH B 116 316 257 HOH HOH . E 3 HOH B 117 317 119 HOH HOH . E 3 HOH B 118 318 96 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x 27.076 _atom_site.Cartn_y 68.483 _atom_site.Cartn_z -9.12 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 19.01 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 101 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 222 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #