data_5JVS # _model_server_result.job_id '_FjGmq4UcmRsuwQGGkWXog' _model_server_result.datetime_utc '2024-10-28 02:31:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5jvs # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":101}' # _entry.id 5JVS # _exptl.entry_id 5JVS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5JVS _cell.length_a 40.016 _cell.length_b 40.016 _cell.length_c 185.369 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5JVS _symmetry.cell_setting ? _symmetry.Int_Tables_number 98 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 41 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 10_545 -x,-y-1,z -1 0 0 0 -1 0 0 0 1 0 -40.016 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5JVS _atom_sites.fract_transf_matrix[1][1] 0.02499 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.02499 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005395 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 101 1 ZN ZN . C 3 EDO A 1 102 1 EDO EDO . D 4 HOH A 1 201 12 HOH HOH . D 4 HOH A 2 202 25 HOH HOH . D 4 HOH A 3 203 22 HOH HOH . D 4 HOH A 4 204 38 HOH HOH . D 4 HOH A 5 205 21 HOH HOH . D 4 HOH A 6 206 35 HOH HOH . D 4 HOH A 7 207 19 HOH HOH . D 4 HOH A 8 208 16 HOH HOH . D 4 HOH A 9 209 37 HOH HOH . D 4 HOH A 10 210 3 HOH HOH . D 4 HOH A 11 211 15 HOH HOH . D 4 HOH A 12 212 30 HOH HOH . D 4 HOH A 13 213 32 HOH HOH . D 4 HOH A 14 214 28 HOH HOH . D 4 HOH A 15 215 10 HOH HOH . D 4 HOH A 16 216 24 HOH HOH . D 4 HOH A 17 217 27 HOH HOH . D 4 HOH A 18 218 36 HOH HOH . D 4 HOH A 19 219 18 HOH HOH . D 4 HOH A 20 220 41 HOH HOH . D 4 HOH A 21 221 14 HOH HOH . D 4 HOH A 22 222 26 HOH HOH . D 4 HOH A 23 223 40 HOH HOH . D 4 HOH A 24 224 17 HOH HOH . D 4 HOH A 25 225 4 HOH HOH . D 4 HOH A 26 226 33 HOH HOH . D 4 HOH A 27 227 20 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x 0 _atom_site.Cartn_y -20.006 _atom_site.Cartn_z -46.342 _atom_site.occupancy 0.25 _atom_site.B_iso_or_equiv 333.18 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 101 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 66 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 254 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #