data_5JW0 # _model_server_result.job_id RKFmeSU0rNKRd6BEgxcc7w _model_server_result.datetime_utc '2024-10-13 17:18:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5jw0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":105}' # _entry.id 5JW0 # _exptl.entry_id 5JW0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5JW0 _cell.length_a 50.564 _cell.length_b 50.564 _cell.length_c 125.243 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5JW0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 G N N ? 3 H N N ? 3 I N N ? 3 J N N ? 3 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A N7 DG 2 A DG 5 1_555 J ZN ZN . A ZN 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? metalc ? metalc2 A N7 DG 3 A DG 6 1_555 G ZN ZN . A ZN 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? metalc ? metalc3 A N7 DA 6 A DA 9 1_555 I ZN ZN . A ZN 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? metalc ? metalc4 C O14 6O7 . A 6O7 101 1_555 F ZN ZN . A ZN 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? metalc ? metalc5 C O15 6O7 . A 6O7 101 1_555 F ZN ZN . A ZN 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.98 ? metalc ? metalc6 D O14 6O7 . A 6O7 102 1_555 F ZN ZN . A ZN 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.998 ? metalc ? metalc7 D O15 6O7 . A 6O7 102 1_555 F ZN ZN . A ZN 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.95 ? metalc ? metalc8 E O14 6O7 . A 6O7 103 1_555 H ZN ZN . A ZN 106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.008 ? metalc ? metalc9 E O15 6O7 . A 6O7 103 1_555 H ZN ZN . A ZN 106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.962 ? metalc ? metalc10 F ZN ZN . A ZN 104 1_555 M O HOH . A HOH 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.967 ? metalc ? metalc11 F ZN ZN . A ZN 104 1_555 M O HOH . A HOH 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? metalc ? metalc12 G ZN ZN . A ZN 105 1_555 M O HOH . A HOH 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.996 ? metalc ? metalc13 G ZN ZN . A ZN 105 1_555 M O HOH . A HOH 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.995 ? metalc ? metalc14 H ZN ZN . A ZN 106 1_555 M O HOH . A HOH 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.992 ? metalc ? metalc15 H ZN ZN . A ZN 106 1_555 M O HOH . A HOH 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.987 ? metalc ? metalc16 H ZN ZN . A ZN 106 1_555 K O15 6O7 . B 6O7 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.974 ? metalc ? metalc17 H ZN ZN . A ZN 106 1_555 K O14 6O7 . B 6O7 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.011 ? metalc ? metalc18 J ZN ZN . A ZN 108 1_555 M O HOH . A HOH 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.988 ? metalc ? metalc19 B N7 DG 3 B DG 0 1_555 L ZN ZN . B ZN 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? metalc ? metalc20 L ZN ZN . B ZN 102 1_555 N O HOH . B HOH 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.977 ? metalc ? metalc21 L ZN ZN . B ZN 102 1_555 N O HOH . B HOH 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.994 ? metalc ? metalc22 L ZN ZN . B ZN 102 1_555 N O HOH . B HOH 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? hydrog WATSON-CRICK hydrog1 A N1 DA 1 A DA 4 1_555 B N3 DT 10 B DT 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N6 DA 1 A DA 4 1_555 B O4 DT 10 B DT 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A N1 DG 2 A DG 5 1_555 B N3 DC 9 B DC 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A N2 DG 2 A DG 5 1_555 B O2 DC 9 B DC 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A O6 DG 2 A DG 5 1_555 B N4 DC 9 B DC 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A N1 DG 3 A DG 6 1_555 B N3 DC 8 B DC 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A N2 DG 3 A DG 6 1_555 B O2 DC 8 B DC 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A O6 DG 3 A DG 6 1_555 B N4 DC 8 B DC 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A N1 DG 4 A DG 7 1_555 B N3 DC 7 B DC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A N2 DG 4 A DG 7 1_555 B O2 DC 7 B DC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A O6 DG 4 A DG 7 1_555 B N4 DC 7 B DC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 A N3 DT 5 A DT 8 1_555 B N1 DA 6 B DA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 A O4 DT 5 A DT 8 1_555 B N6 DA 6 B DA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 A N1 DA 6 A DA 9 1_555 B N3 DT 5 B DT 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 A N6 DA 6 A DA 9 1_555 B O4 DT 5 B DT 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 A N3 DC 7 A DC 10 1_555 B N1 DG 4 B DG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 A N4 DC 7 A DC 10 1_555 B O6 DG 4 B DG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 A O2 DC 7 A DC 10 1_555 B N2 DG 4 B DG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 A N3 DC 8 A DC 11 1_555 B N1 DG 3 B DG 0 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 A N4 DC 8 A DC 11 1_555 B O6 DG 3 B DG 0 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 A O2 DC 8 A DC 11 1_555 B N2 DG 3 B DG 0 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 A N3 DC 9 A DC 12 1_555 B N1 DG 2 B DG -1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 A N4 DC 9 A DC 12 1_555 B O6 DG 2 B DG -1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 A O2 DC 9 A DC 12 1_555 B N2 DG 2 B DG -1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 A N3 DT 10 A DT 13 1_555 B N1 DA 1 B DA -2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 A O4 DT 10 A DT 13 1_555 B N6 DA 1 B DA -2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5JW0 _atom_sites.fract_transf_matrix[1][1] 0.019777 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019777 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007984 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 6O7 A 1 101 1 6O7 MTF . D 2 6O7 A 1 102 1 6O7 MTF . E 2 6O7 A 1 103 1 6O7 MTF . F 3 ZN A 1 104 6 ZN ZN . G 3 ZN A 1 105 1 ZN ZN . H 3 ZN A 1 106 2 ZN ZN . I 3 ZN A 1 107 4 ZN ZN . J 3 ZN A 1 108 5 ZN ZN . K 2 6O7 B 1 101 1 6O7 MTF . L 3 ZN B 1 102 3 ZN ZN . M 4 HOH A 1 201 4 HOH HOH . M 4 HOH A 2 202 10 HOH HOH . M 4 HOH A 3 203 1 HOH HOH . M 4 HOH A 4 204 3 HOH HOH . M 4 HOH A 5 205 2 HOH HOH . M 4 HOH A 6 206 9 HOH HOH . M 4 HOH A 7 207 8 HOH HOH . N 4 HOH B 1 201 6 HOH HOH . N 4 HOH B 2 202 7 HOH HOH . N 4 HOH B 3 203 5 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id G _atom_site.label_entity_id 3 _atom_site.Cartn_x -27.67 _atom_site.Cartn_y 1.091 _atom_site.Cartn_z -2.656 _atom_site.occupancy 0.8 _atom_site.B_iso_or_equiv 65.92 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 105 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 253 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #