data_5JWB # _model_server_result.job_id IUgqGQbsVvyCfR0mME161A _model_server_result.datetime_utc '2024-11-17 10:52:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5jwb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":601}' # _entry.id 5JWB # _exptl.entry_id 5JWB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 785.55 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN-ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5JWB _cell.length_a 191.53 _cell.length_b 191.53 _cell.length_c 91.258 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5JWB _symmetry.cell_setting ? _symmetry.Int_Tables_number 80 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 41' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 R N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ALA 135 A ALA 147 1_555 E MG MG . A MG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.692 ? metalc ? metalc2 A O ILE 340 A ILE 352 1_555 D MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.609 ? metalc ? metalc3 C O2P FAD . A FAD 601 1_555 D MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.672 ? metalc ? metalc4 C O1P FAD . A FAD 601 1_555 E MG MG . A MG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.722 ? metalc ? metalc5 C O2A FAD . A FAD 601 1_555 F MG MG . A MG 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.874 ? metalc ? metalc6 C O1A FAD . A FAD 601 1_555 G MG MG . A MG 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.837 ? metalc ? metalc7 B O ALA 135 H ALA 147 1_555 T MG MG . H MG 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.664 ? metalc ? metalc8 B O ILE 340 H ILE 352 1_555 S MG MG . H MG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.601 ? metalc ? metalc9 R O2P FAD . H FAD 602 1_555 S MG MG . H MG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.655 ? metalc ? metalc10 R O1P FAD . H FAD 602 1_555 T MG MG . H MG 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.597 ? metalc ? metalc11 R O2A FAD . H FAD 602 1_555 U MG MG . H MG 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.803 ? metalc ? metalc12 R O1A FAD . H FAD 602 1_555 V MG MG . H MG 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.811 ? # _chem_comp.formula 'C27 H33 N9 O15 P2' _chem_comp.formula_weight 785.55 _chem_comp.id FAD _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN-ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A FAD doub 122 n n PA O2A FAD sing 123 n n PA O5B FAD sing 124 n n PA O3P FAD sing 125 n n O2A HOA2 FAD sing 126 n n O5B C5B FAD sing 127 n n C5B C4B FAD sing 128 n n C5B H51A FAD sing 129 n n C5B H52A FAD sing 130 n n C4B O4B FAD sing 131 n n C4B C3B FAD sing 132 n n C4B H4B FAD sing 133 n n O4B C1B FAD sing 134 n n C3B O3B FAD sing 135 n n C3B C2B FAD sing 136 n n C3B H3B FAD sing 137 n n O3B HO3A FAD sing 138 n n C2B O2B FAD sing 139 n n C2B C1B FAD sing 140 n n C2B H2B FAD sing 141 n n O2B HO2A FAD sing 142 n n C1B N9A FAD sing 143 n n C1B H1B FAD sing 144 n n N9A C8A FAD sing 145 n y N9A C4A FAD sing 146 n y C8A N7A FAD doub 147 n y C8A H8A FAD sing 148 n n N7A C5A FAD sing 149 n y C5A C6A FAD sing 150 n y C5A C4A FAD doub 151 n y C6A N6A FAD sing 152 n n C6A N1A FAD doub 153 n y N6A H61A FAD sing 154 n n N6A H62A FAD sing 155 n n N1A C2A FAD sing 156 n y C2A N3A FAD doub 157 n y C2A H2A FAD sing 158 n n N3A C4A FAD sing 159 n y N1 C2 FAD sing 160 n n N1 C10 FAD doub 161 n n C2 O2 FAD doub 162 n n C2 N3 FAD sing 163 n n N3 C4 FAD sing 164 n n N3 HN3 FAD sing 165 n n C4 O4 FAD doub 166 n n C4 C4X FAD sing 167 n n C4X N5 FAD doub 168 n n C4X C10 FAD sing 169 n n N5 C5X FAD sing 170 n n C5X C6 FAD doub 171 n y C5X C9A FAD sing 172 n y C6 C7 FAD sing 173 n y C6 H6 FAD sing 174 n n C7 C7M FAD sing 175 n n C7 C8 FAD doub 176 n y C7M HM71 FAD sing 177 n n C7M HM72 FAD sing 178 n n C7M HM73 FAD sing 179 n n C8 C8M FAD sing 180 n n C8 C9 FAD sing 181 n y C8M HM81 FAD sing 182 n n C8M HM82 FAD sing 183 n n C8M HM83 FAD sing 184 n n C9 C9A FAD doub 185 n y C9 H9 FAD sing 186 n n C9A N10 FAD sing 187 n n N10 C10 FAD sing 188 n n N10 C1' FAD sing 189 n n C1' C2' FAD sing 190 n n C1' "H1'1" FAD sing 191 n n C1' "H1'2" FAD sing 192 n n C2' O2' FAD sing 193 n n C2' C3' FAD sing 194 n n C2' H2' FAD sing 195 n n O2' HO2' FAD sing 196 n n C3' O3' FAD sing 197 n n C3' C4' FAD sing 198 n n C3' H3' FAD sing 199 n n O3' HO3' FAD sing 200 n n C4' O4' FAD sing 201 n n C4' C5' FAD sing 202 n n C4' H4' FAD sing 203 n n O4' HO4' FAD sing 204 n n C5' O5' FAD sing 205 n n C5' "H5'1" FAD sing 206 n n C5' "H5'2" FAD sing 207 n n O5' P FAD sing 208 n n P O1P FAD doub 209 n n P O2P FAD sing 210 n n P O3P FAD sing 211 n n O2P HOP2 FAD sing 212 n n # _atom_sites.entry_id 5JWB _atom_sites.fract_transf_matrix[1][1] 0.005221 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005221 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010958 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FAD A 1 601 601 FAD FAD . D 3 MG A 1 602 602 MG MG . E 3 MG A 1 603 603 MG MG . F 3 MG A 1 604 604 MG MG . G 3 MG A 1 605 605 MG MG . H 4 TRT A 1 606 606 TRT TRT . I 4 TRT A 1 607 607 TRT TRT . J 5 NAD A 1 608 608 NAD NAD . K 4 TRT A 1 609 609 TRT TRT . L 6 ACT A 1 610 610 ACT ACT . M 6 ACT A 1 611 611 ACT ACT . N 6 ACT A 1 612 612 ACT ACT . O 6 ACT A 1 613 613 ACT ACT . P 7 CXS A 1 614 614 CXS CXS . Q 4 TRT H 1 601 601 TRT TRT . R 2 FAD H 1 602 602 FAD FAD . S 3 MG H 1 603 603 MG MG . T 3 MG H 1 604 604 MG MG . U 3 MG H 1 605 605 MG MG . V 3 MG H 1 606 606 MG MG . W 5 NAD H 1 607 607 NAD NAD . X 4 TRT H 1 608 608 TRT TRT . Y 4 TRT H 1 609 609 TRT TRT . Z 6 ACT H 1 610 610 ACT ACT . AA 6 ACT H 1 611 611 ACT ACT . BA 6 ACT H 1 612 612 ACT ACT . CA 7 CXS H 1 613 613 CXS CXS . DA 8 HOH A 1 701 701 HOH HOH . DA 8 HOH A 2 702 702 HOH HOH . DA 8 HOH A 3 703 703 HOH HOH . DA 8 HOH A 4 704 704 HOH HOH . DA 8 HOH A 5 705 705 HOH HOH . DA 8 HOH A 6 706 706 HOH HOH . DA 8 HOH A 7 707 707 HOH HOH . DA 8 HOH A 8 708 708 HOH HOH . DA 8 HOH A 9 709 709 HOH HOH . DA 8 HOH A 10 710 710 HOH HOH . DA 8 HOH A 11 711 711 HOH HOH . DA 8 HOH A 12 712 712 HOH HOH . DA 8 HOH A 13 713 713 HOH HOH . DA 8 HOH A 14 714 714 HOH HOH . EA 8 HOH H 1 701 701 HOH HOH . EA 8 HOH H 2 702 702 HOH HOH . EA 8 HOH H 3 703 703 HOH HOH . EA 8 HOH H 4 704 704 HOH HOH . EA 8 HOH H 5 705 705 HOH HOH . EA 8 HOH H 6 706 706 HOH HOH . EA 8 HOH H 7 707 707 HOH HOH . EA 8 HOH H 8 708 708 HOH HOH . EA 8 HOH H 9 709 709 HOH HOH . EA 8 HOH H 10 710 710 HOH HOH . EA 8 HOH H 11 711 711 HOH HOH . EA 8 HOH H 12 712 712 HOH HOH . EA 8 HOH H 13 713 713 HOH HOH . EA 8 HOH H 14 714 714 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA FAD . . . C 2 58.572 -4.342 -11.293 1 30.26 ? PA FAD 601 A 1 HETATM 2 O O1A FAD . . . C 2 59.07 -5.315 -10.25 1 29.83 ? O1A FAD 601 A 1 HETATM 3 O O2A FAD . . . C 2 58.548 -2.891 -10.887 1 25.39 ? O2A FAD 601 A 1 HETATM 4 O O5B FAD . . . C 2 57.156 -4.81 -11.876 1 31.23 ? O5B FAD 601 A 1 HETATM 5 C C5B FAD . . . C 2 56.93 -6.15 -12.213 1 28.85 ? C5B FAD 601 A 1 HETATM 6 C C4B FAD . . . C 2 55.427 -6.334 -12.228 1 32.98 ? C4B FAD 601 A 1 HETATM 7 O O4B FAD . . . C 2 55.124 -7.528 -12.908 1 37.02 ? O4B FAD 601 A 1 HETATM 8 C C3B FAD . . . C 2 54.819 -6.433 -10.838 1 32.49 ? C3B FAD 601 A 1 HETATM 9 O O3B FAD . . . C 2 53.63 -5.681 -10.814 1 30.92 ? O3B FAD 601 A 1 HETATM 10 C C2B FAD . . . C 2 54.454 -7.89 -10.703 1 31.08 ? C2B FAD 601 A 1 HETATM 11 O O2B FAD . . . C 2 53.288 -8.028 -9.931 1 32.11 ? O2B FAD 601 A 1 HETATM 12 C C1B FAD . . . C 2 54.191 -8.256 -12.148 1 34.58 ? C1B FAD 601 A 1 HETATM 13 N N9A FAD . . . C 2 54.344 -9.679 -12.458 1 33.51 ? N9A FAD 601 A 1 HETATM 14 C C8A FAD . . . C 2 55.23 -10.609 -11.991 1 32.71 ? C8A FAD 601 A 1 HETATM 15 N N7A FAD . . . C 2 54.987 -11.791 -12.609 1 32.12 ? N7A FAD 601 A 1 HETATM 16 C C5A FAD . . . C 2 53.946 -11.611 -13.462 1 35.54 ? C5A FAD 601 A 1 HETATM 17 C C6A FAD . . . C 2 53.269 -12.449 -14.334 1 34.63 ? C6A FAD 601 A 1 HETATM 18 N N6A FAD . . . C 2 53.809 -13.582 -14.761 1 38.38 ? N6A FAD 601 A 1 HETATM 19 N N1A FAD . . . C 2 52.241 -11.927 -15.065 1 37.77 ? N1A FAD 601 A 1 HETATM 20 C C2A FAD . . . C 2 51.883 -10.603 -14.959 1 36.5 ? C2A FAD 601 A 1 HETATM 21 N N3A FAD . . . C 2 52.548 -9.772 -14.099 1 33.19 ? N3A FAD 601 A 1 HETATM 22 C C4A FAD . . . C 2 53.553 -10.284 -13.37 1 34.82 ? C4A FAD 601 A 1 HETATM 23 N N1 FAD . . . C 2 65.353 1.762 -9.017 1 31.09 ? N1 FAD 601 A 1 HETATM 24 C C2 FAD . . . C 2 65.733 3.061 -9.246 1 33.72 ? C2 FAD 601 A 1 HETATM 25 O O2 FAD . . . C 2 65.99 3.441 -10.393 1 33.29 ? O2 FAD 601 A 1 HETATM 26 N N3 FAD . . . C 2 65.832 3.939 -8.188 1 32.56 ? N3 FAD 601 A 1 HETATM 27 C C4 FAD . . . C 2 65.553 3.553 -6.897 1 35.25 ? C4 FAD 601 A 1 HETATM 28 O O4 FAD . . . C 2 65.648 4.358 -5.965 1 34.22 ? O4 FAD 601 A 1 HETATM 29 C C4X FAD . . . C 2 65.155 2.25 -6.671 1 35.25 ? C4X FAD 601 A 1 HETATM 30 N N5 FAD . . . C 2 64.856 1.838 -5.396 1 32.71 ? N5 FAD 601 A 1 HETATM 31 C C5X FAD . . . C 2 64.464 0.53 -5.184 1 34.74 ? C5X FAD 601 A 1 HETATM 32 C C6 FAD . . . C 2 64.166 0.084 -3.899 1 34.71 ? C6 FAD 601 A 1 HETATM 33 C C7 FAD . . . C 2 63.778 -1.235 -3.68 1 34.91 ? C7 FAD 601 A 1 HETATM 34 C C7M FAD . . . C 2 63.452 -1.687 -2.282 1 29.28 ? C7M FAD 601 A 1 HETATM 35 C C8 FAD . . . C 2 63.686 -2.111 -4.764 1 31.03 ? C8 FAD 601 A 1 HETATM 36 C C8M FAD . . . C 2 63.275 -3.538 -4.592 1 31.73 ? C8M FAD 601 A 1 HETATM 37 C C9 FAD . . . C 2 63.983 -1.67 -6.036 1 34.68 ? C9 FAD 601 A 1 HETATM 38 C C9A FAD . . . C 2 64.378 -0.355 -6.253 1 36.46 ? C9A FAD 601 A 1 HETATM 39 N N10 FAD . . . C 2 64.675 0.065 -7.538 1 34.52 ? N10 FAD 601 A 1 HETATM 40 C C10 FAD . . . C 2 65.065 1.363 -7.742 1 34.77 ? C10 FAD 601 A 1 HETATM 41 C C1' FAD . . . C 2 64.588 -0.891 -8.689 1 32.41 ? C1' FAD 601 A 1 HETATM 42 C C2' FAD . . . C 2 63.239 -0.87 -9.374 1 33.24 ? C2' FAD 601 A 1 HETATM 43 O O2' FAD . . . C 2 62.198 -1.222 -8.498 1 31.48 ? O2' FAD 601 A 1 HETATM 44 C C3' FAD . . . C 2 63.237 -1.917 -10.461 1 35.57 ? C3' FAD 601 A 1 HETATM 45 O O3' FAD . . . C 2 64.328 -1.682 -11.315 1 33.83 ? O3' FAD 601 A 1 HETATM 46 C C4' FAD . . . C 2 61.911 -1.753 -11.186 1 34.15 ? C4' FAD 601 A 1 HETATM 47 O O4' FAD . . . C 2 60.912 -2.4 -10.431 1 32.88 ? O4' FAD 601 A 1 HETATM 48 C C5' FAD . . . C 2 61.913 -2.319 -12.592 1 30.17 ? C5' FAD 601 A 1 HETATM 49 O O5' FAD . . . C 2 60.574 -2.243 -13.012 1 34.33 ? O5' FAD 601 A 1 HETATM 50 P P FAD . . . C 2 59.803 -3.482 -13.69 1 27.01 ? P FAD 601 A 1 HETATM 51 O O1P FAD . . . C 2 58.51 -2.936 -14.229 1 31.43 ? O1P FAD 601 A 1 HETATM 52 O O2P FAD . . . C 2 60.699 -4.126 -14.699 1 33.7 ? O2P FAD 601 A 1 HETATM 53 O O3P FAD . . . C 2 59.523 -4.578 -12.558 1 36.52 ? O3P FAD 601 A 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 495 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 53 #