data_5JWP # _model_server_result.job_id rXTOqIE7t4YkM7pBaJbeyQ _model_server_result.datetime_utc '2024-10-18 06:19:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5jwp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 5JWP # _exptl.entry_id 5JWP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 146.098 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-OXOGLUTARIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5JWP _cell.length_a 86.22 _cell.length_b 86.22 _cell.length_c 149.903 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5JWP _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_465 y-1,x+1,-z 0 1 0 1 0 0 0 0 -1 -86.22 86.22 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 202 A HIS 199 1_555 E ZN ZN . A ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.122 ? metalc ? metalc2 A OE1 GLU 204 A GLU 201 1_555 E ZN ZN . A ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.857 ? metalc ? metalc3 A NE2 HIS 282 A HIS 279 1_555 E ZN ZN . A ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? metalc ? metalc4 C O2 AKG . A AKG 401 1_555 E ZN ZN . A ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? metalc ? metalc5 C O5 AKG . A AKG 401 1_555 E ZN ZN . A ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.175 ? # _chem_comp.formula 'C5 H6 O5' _chem_comp.formula_weight 146.098 _chem_comp.id AKG _chem_comp.mon_nstd_flag . _chem_comp.name '2-OXOGLUTARIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 AKG doub 1 n n C1 O2 AKG sing 2 n n C1 C2 AKG sing 3 n n O2 HO2 AKG sing 4 n n C2 O5 AKG doub 5 n n C2 C3 AKG sing 6 n n C3 C4 AKG sing 7 n n C3 H31 AKG sing 8 n n C3 H32 AKG sing 9 n n C4 C5 AKG sing 10 n n C4 H41 AKG sing 11 n n C4 H42 AKG sing 12 n n C5 O3 AKG doub 13 n n C5 O4 AKG sing 14 n n O4 HO4 AKG sing 15 n n # _atom_sites.entry_id 5JWP _atom_sites.fract_transf_matrix[1][1] 0.011598 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011598 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006671 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 AKG A 1 401 1351 AKG AKG . D 4 GOL A 1 402 2000 GOL GOL . E 5 ZN A 1 403 1 ZN ZN . F 6 SO4 A 1 404 1 SO4 SO4 . G 6 SO4 A 1 405 2 SO4 SO4 . H 6 SO4 A 1 406 3 SO4 SO4 . I 6 SO4 A 1 407 4 SO4 SO4 . J 7 HOH A 1 501 98 HOH HOH . J 7 HOH A 2 502 162 HOH HOH . J 7 HOH A 3 503 118 HOH HOH . J 7 HOH A 4 504 34 HOH HOH . J 7 HOH A 5 505 31 HOH HOH . J 7 HOH A 6 506 92 HOH HOH . J 7 HOH A 7 507 201 HOH HOH . J 7 HOH A 8 508 104 HOH HOH . J 7 HOH A 9 509 160 HOH HOH . J 7 HOH A 10 510 71 HOH HOH . J 7 HOH A 11 511 207 HOH HOH . J 7 HOH A 12 512 51 HOH HOH . J 7 HOH A 13 513 197 HOH HOH . J 7 HOH A 14 514 140 HOH HOH . J 7 HOH A 15 515 99 HOH HOH . J 7 HOH A 16 516 3 HOH HOH . J 7 HOH A 17 517 117 HOH HOH . J 7 HOH A 18 518 108 HOH HOH . J 7 HOH A 19 519 77 HOH HOH . J 7 HOH A 20 520 11 HOH HOH . J 7 HOH A 21 521 96 HOH HOH . J 7 HOH A 22 522 75 HOH HOH . J 7 HOH A 23 523 114 HOH HOH . J 7 HOH A 24 524 72 HOH HOH . J 7 HOH A 25 525 48 HOH HOH . J 7 HOH A 26 526 103 HOH HOH . J 7 HOH A 27 527 12 HOH HOH . J 7 HOH A 28 528 37 HOH HOH . J 7 HOH A 29 529 8 HOH HOH . J 7 HOH A 30 530 183 HOH HOH . J 7 HOH A 31 531 202 HOH HOH . J 7 HOH A 32 532 78 HOH HOH . J 7 HOH A 33 533 28 HOH HOH . J 7 HOH A 34 534 50 HOH HOH . J 7 HOH A 35 535 120 HOH HOH . J 7 HOH A 36 536 155 HOH HOH . J 7 HOH A 37 537 58 HOH HOH . J 7 HOH A 38 538 195 HOH HOH . J 7 HOH A 39 539 132 HOH HOH . J 7 HOH A 40 540 14 HOH HOH . J 7 HOH A 41 541 35 HOH HOH . J 7 HOH A 42 542 164 HOH HOH . J 7 HOH A 43 543 40 HOH HOH . J 7 HOH A 44 544 137 HOH HOH . J 7 HOH A 45 545 65 HOH HOH . J 7 HOH A 46 546 100 HOH HOH . J 7 HOH A 47 547 4 HOH HOH . J 7 HOH A 48 548 79 HOH HOH . J 7 HOH A 49 549 10 HOH HOH . J 7 HOH A 50 550 27 HOH HOH . J 7 HOH A 51 551 156 HOH HOH . J 7 HOH A 52 552 107 HOH HOH . J 7 HOH A 53 553 89 HOH HOH . J 7 HOH A 54 554 2 HOH HOH . J 7 HOH A 55 555 119 HOH HOH . J 7 HOH A 56 556 20 HOH HOH . J 7 HOH A 57 557 23 HOH HOH . J 7 HOH A 58 558 190 HOH HOH . J 7 HOH A 59 559 180 HOH HOH . J 7 HOH A 60 560 80 HOH HOH . J 7 HOH A 61 561 182 HOH HOH . J 7 HOH A 62 562 43 HOH HOH . J 7 HOH A 63 563 123 HOH HOH . J 7 HOH A 64 564 86 HOH HOH . J 7 HOH A 65 565 147 HOH HOH . J 7 HOH A 66 566 95 HOH HOH . J 7 HOH A 67 567 239 HOH HOH . J 7 HOH A 68 568 91 HOH HOH . J 7 HOH A 69 569 133 HOH HOH . J 7 HOH A 70 570 7 HOH HOH . J 7 HOH A 71 571 70 HOH HOH . J 7 HOH A 72 572 106 HOH HOH . J 7 HOH A 73 573 49 HOH HOH . J 7 HOH A 74 574 13 HOH HOH . J 7 HOH A 75 575 67 HOH HOH . J 7 HOH A 76 576 113 HOH HOH . J 7 HOH A 77 577 56 HOH HOH . J 7 HOH A 78 578 73 HOH HOH . J 7 HOH A 79 579 102 HOH HOH . J 7 HOH A 80 580 42 HOH HOH . J 7 HOH A 81 581 26 HOH HOH . J 7 HOH A 82 582 60 HOH HOH . J 7 HOH A 83 583 179 HOH HOH . J 7 HOH A 84 584 185 HOH HOH . J 7 HOH A 85 585 21 HOH HOH . J 7 HOH A 86 586 55 HOH HOH . J 7 HOH A 87 587 174 HOH HOH . J 7 HOH A 88 588 62 HOH HOH . J 7 HOH A 89 589 38 HOH HOH . J 7 HOH A 90 590 16 HOH HOH . J 7 HOH A 91 591 39 HOH HOH . J 7 HOH A 92 592 87 HOH HOH . J 7 HOH A 93 593 130 HOH HOH . J 7 HOH A 94 594 29 HOH HOH . J 7 HOH A 95 595 203 HOH HOH . J 7 HOH A 96 596 19 HOH HOH . J 7 HOH A 97 597 115 HOH HOH . J 7 HOH A 98 598 15 HOH HOH . J 7 HOH A 99 599 30 HOH HOH . J 7 HOH A 100 600 59 HOH HOH . J 7 HOH A 101 601 74 HOH HOH . J 7 HOH A 102 602 64 HOH HOH . J 7 HOH A 103 603 152 HOH HOH . J 7 HOH A 104 604 45 HOH HOH . J 7 HOH A 105 605 234 HOH HOH . J 7 HOH A 106 606 101 HOH HOH . J 7 HOH A 107 607 192 HOH HOH . J 7 HOH A 108 608 97 HOH HOH . J 7 HOH A 109 609 66 HOH HOH . J 7 HOH A 110 610 109 HOH HOH . J 7 HOH A 111 611 112 HOH HOH . J 7 HOH A 112 612 176 HOH HOH . J 7 HOH A 113 613 208 HOH HOH . J 7 HOH A 114 614 186 HOH HOH . J 7 HOH A 115 615 221 HOH HOH . J 7 HOH A 116 616 177 HOH HOH . J 7 HOH A 117 617 24 HOH HOH . J 7 HOH A 118 618 135 HOH HOH . J 7 HOH A 119 619 193 HOH HOH . J 7 HOH A 120 620 93 HOH HOH . J 7 HOH A 121 621 124 HOH HOH . J 7 HOH A 122 622 52 HOH HOH . J 7 HOH A 123 623 230 HOH HOH . J 7 HOH A 124 624 240 HOH HOH . J 7 HOH A 125 625 153 HOH HOH . J 7 HOH A 126 626 84 HOH HOH . J 7 HOH A 127 627 41 HOH HOH . J 7 HOH A 128 628 166 HOH HOH . J 7 HOH A 129 629 184 HOH HOH . J 7 HOH A 130 630 200 HOH HOH . J 7 HOH A 131 631 224 HOH HOH . J 7 HOH A 132 632 196 HOH HOH . J 7 HOH A 133 633 228 HOH HOH . J 7 HOH A 134 634 233 HOH HOH . J 7 HOH A 135 635 222 HOH HOH . J 7 HOH A 136 636 209 HOH HOH . J 7 HOH A 137 637 136 HOH HOH . J 7 HOH A 138 638 131 HOH HOH . J 7 HOH A 139 639 57 HOH HOH . J 7 HOH A 140 640 161 HOH HOH . J 7 HOH A 141 641 227 HOH HOH . J 7 HOH A 142 642 225 HOH HOH . J 7 HOH A 143 643 134 HOH HOH . J 7 HOH A 144 644 122 HOH HOH . J 7 HOH A 145 645 144 HOH HOH . J 7 HOH A 146 646 235 HOH HOH . J 7 HOH A 147 647 210 HOH HOH . J 7 HOH A 148 648 141 HOH HOH . J 7 HOH A 149 649 121 HOH HOH . J 7 HOH A 150 650 158 HOH HOH . J 7 HOH A 151 651 212 HOH HOH . J 7 HOH A 152 652 173 HOH HOH . J 7 HOH A 153 653 125 HOH HOH . J 7 HOH A 154 654 198 HOH HOH . J 7 HOH A 155 655 139 HOH HOH . J 7 HOH A 156 656 169 HOH HOH . J 7 HOH A 157 657 199 HOH HOH . J 7 HOH A 158 658 226 HOH HOH . J 7 HOH A 159 659 127 HOH HOH . J 7 HOH A 160 660 69 HOH HOH . J 7 HOH A 161 661 85 HOH HOH . J 7 HOH A 162 662 81 HOH HOH . J 7 HOH A 163 663 188 HOH HOH . J 7 HOH A 164 664 105 HOH HOH . J 7 HOH A 165 665 217 HOH HOH . J 7 HOH A 166 666 154 HOH HOH . J 7 HOH A 167 667 204 HOH HOH . J 7 HOH A 168 668 220 HOH HOH . J 7 HOH A 169 669 128 HOH HOH . K 7 HOH B 1 901 126 HOH HOH . K 7 HOH B 2 902 46 HOH HOH . K 7 HOH B 3 903 237 HOH HOH . K 7 HOH B 4 904 129 HOH HOH . K 7 HOH B 5 905 241 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 AKG . . . C 3 -25.645 22.08 -9.447 1 43.67 ? C1 AKG 401 A 1 HETATM 2 O O1 AKG . . . C 3 -24.491 21.98 -9.904 1 39.44 ? O1 AKG 401 A 1 HETATM 3 O O2 AKG . . . C 3 -26.233 23.199 -9.436 1 40.81 ? O2 AKG 401 A 1 HETATM 4 C C2 AKG . . . C 3 -26.323 20.877 -8.957 1 45.41 ? C2 AKG 401 A 1 HETATM 5 O O5 AKG . . . C 3 -27.48 21.004 -8.515 1 46.72 ? O5 AKG 401 A 1 HETATM 6 C C3 AKG . . . C 3 -25.603 19.526 -9.05 1 46.67 ? C3 AKG 401 A 1 HETATM 7 C C4 AKG . . . C 3 -26.237 18.409 -8.233 1 40.1 ? C4 AKG 401 A 1 HETATM 8 C C5 AKG . . . C 3 -25.807 17.005 -8.624 1 40.84 ? C5 AKG 401 A 1 HETATM 9 O O3 AKG . . . C 3 -25.174 16.803 -9.662 1 43.19 ? O3 AKG 401 A 1 HETATM 10 O O4 AKG . . . C 3 -26.203 16.06 -7.901 1 37.93 ? O4 AKG 401 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 10 #