data_5JWY # _model_server_result.job_id by6a9hHkBY-cPilcyHMrTg _model_server_result.datetime_utc '2025-07-20 09:02:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5jwy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 5JWY # _exptl.entry_id 5JWY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 635.853 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-3-{[(S)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-2-(tetradecanoyloxy)propyl tetradecanoate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5JWY _cell.length_a 39.533 _cell.length_b 73.593 _cell.length_c 132.095 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5JWY _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C MSE 1 A MSE 1 1_555 A N ARG 2 A ARG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale2 A C VAL 17 A VAL 17 1_555 A N MSE 18 A MSE 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale3 A C MSE 18 A MSE 18 1_555 A N PRO 19 A PRO 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.355 ? covale ? covale4 A C THR 164 A THR 164 1_555 A N MSE 165 A MSE 165 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale5 A C MSE 165 A MSE 165 1_555 A N PHE 166 A PHE 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale6 A C VAL 197 A VAL 197 1_555 A N MSE 198 A MSE 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale7 A C MSE 198 A MSE 198 1_555 A N GLY 199 A GLY 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale8 A C GLY 205 A GLY 205 1_555 A N MSE 206 A MSE 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale9 A C MSE 206 A MSE 206 1_555 A N HIS 207 A HIS 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? # _chem_comp.formula 'C33 H66 N O8 P' _chem_comp.formula_weight 635.853 _chem_comp.id 46E _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-3-{[(S)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-2-(tetradecanoyloxy)propyl tetradecanoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C3E C3D 46E sing 1 n n C3D C3C 46E sing 2 n n C3C C3B 46E sing 3 n n C2D C2E 46E sing 4 n n C2D C2C 46E sing 5 n n C3B C3A 46E sing 6 n n C2A C2B 46E sing 7 n n C2A C29 46E sing 8 n n C2C C2B 46E sing 9 n n C3A C39 46E sing 10 n n C28 C29 46E sing 11 n n C28 C27 46E sing 12 n n C27 C26 46E sing 13 n n C39 C38 46E sing 14 n n C38 C37 46E sing 15 n n C26 C25 46E sing 16 n n C25 C24 46E sing 17 n n C37 C36 46E sing 18 n n C36 C35 46E sing 19 n n C24 C23 46E sing 20 n n C23 C22 46E sing 21 n n C35 C34 46E sing 22 n n C34 C33 46E sing 23 n n C22 C21 46E sing 24 n n O22 C21 46E doub 25 n n C21 O21 46E sing 26 n n C33 C32 46E sing 27 n n O21 C2 46E sing 28 n n O31 C3 46E sing 29 n n O31 C31 46E sing 30 n n C32 C31 46E sing 31 n n C3 C2 46E sing 32 n n C2 C1 46E sing 33 n n C31 O32 46E doub 34 n n N C12 46E sing 35 n n C1 O11 46E sing 36 n n O11 P 46E sing 37 n n C12 C11 46E sing 38 n n O13 C11 46E sing 39 n n O13 P 46E sing 40 n n P O12 46E doub 41 n n P O14 46E sing 42 n n N H1 46E sing 43 n n N H2 46E sing 44 n n O14 H4 46E sing 45 n n C11 H5 46E sing 46 n n C11 H6 46E sing 47 n n C12 H7 46E sing 48 n n C12 H8 46E sing 49 n n C1 H9 46E sing 50 n n C1 H10 46E sing 51 n n C2 H11 46E sing 52 n n C3 H12 46E sing 53 n n C3 H13 46E sing 54 n n C32 H14 46E sing 55 n n C32 H15 46E sing 56 n n C33 H16 46E sing 57 n n C33 H17 46E sing 58 n n C34 H18 46E sing 59 n n C34 H19 46E sing 60 n n C35 H20 46E sing 61 n n C35 H21 46E sing 62 n n C36 H22 46E sing 63 n n C36 H23 46E sing 64 n n C37 H24 46E sing 65 n n C37 H25 46E sing 66 n n C38 H26 46E sing 67 n n C38 H27 46E sing 68 n n C39 H28 46E sing 69 n n C39 H29 46E sing 70 n n C3A H30 46E sing 71 n n C3A H31 46E sing 72 n n C3B H32 46E sing 73 n n C3B H33 46E sing 74 n n C3C H34 46E sing 75 n n C3C H35 46E sing 76 n n C3D H36 46E sing 77 n n C3D H37 46E sing 78 n n C3E H38 46E sing 79 n n C3E H39 46E sing 80 n n C3E H40 46E sing 81 n n C22 H41 46E sing 82 n n C22 H42 46E sing 83 n n C23 H43 46E sing 84 n n C23 H44 46E sing 85 n n C24 H45 46E sing 86 n n C24 H46 46E sing 87 n n C25 H47 46E sing 88 n n C25 H48 46E sing 89 n n C26 H49 46E sing 90 n n C26 H50 46E sing 91 n n C27 H51 46E sing 92 n n C27 H52 46E sing 93 n n C28 H53 46E sing 94 n n C28 H54 46E sing 95 n n C29 H55 46E sing 96 n n C29 H56 46E sing 97 n n C2A H57 46E sing 98 n n C2A H58 46E sing 99 n n C2B H59 46E sing 100 n n C2B H60 46E sing 101 n n C2C H61 46E sing 102 n n C2C H62 46E sing 103 n n C2D H63 46E sing 104 n n C2D H64 46E sing 105 n n C2E H65 46E sing 106 n n C2E H66 46E sing 107 n n C2E H67 46E sing 108 n n # _atom_sites.entry_id 5JWY _atom_sites.fract_transf_matrix[1][1] 0.025295 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013588 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00757 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 46E A 1 301 1 46E 3PE . C 3 HOH A 1 401 1 HOH HOH . C 3 HOH A 2 402 2 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P 46E . . . B 2 7.761 32.098 45.014 0.3 112.39 ? P 46E 301 A 1 HETATM 2 N N 46E . . . B 2 6.942 35.495 42.457 1 89.19 ? N 46E 301 A 1 HETATM 3 O O11 46E . . . B 2 7.951 31.336 43.602 1 101.71 ? O11 46E 301 A 1 HETATM 4 O O12 46E . . . B 2 6.32 31.91 45.439 1 121.66 ? O12 46E 301 A 1 HETATM 5 O O13 46E . . . B 2 7.969 33.668 44.645 1 118.01 ? O13 46E 301 A 1 HETATM 6 O O14 46E . . . B 2 8.877 31.636 45.937 1 99.72 ? O14 46E 301 A 1 HETATM 7 C C11 46E . . . B 2 6.936 34.656 44.794 1 103.98 ? C11 46E 301 A 1 HETATM 8 C C12 46E . . . B 2 7.217 35.843 43.881 1 95.87 ? C12 46E 301 A 1 HETATM 9 C C1 46E . . . B 2 8.959 30.333 43.479 1 100.4 ? C1 46E 301 A 1 HETATM 10 C C2 46E . . . B 2 9.034 29.814 42.039 1 103.41 ? C2 46E 301 A 1 HETATM 11 C C3 46E . . . B 2 9.094 28.277 42.012 1 108.43 ? C3 46E 301 A 1 HETATM 12 O O31 46E . . . B 2 10.296 27.791 41.393 1 101.01 ? O31 46E 301 A 1 HETATM 13 O O32 46E . . . B 2 11.367 27.34 43.395 1 90.71 ? O32 46E 301 A 1 HETATM 14 C C31 46E . . . B 2 11.311 27.118 42.191 1 94.82 ? C31 46E 301 A 1 HETATM 15 C C32 46E . . . B 2 12.278 26.15 41.544 1 93.25 ? C32 46E 301 A 1 HETATM 16 C C33 46E . . . B 2 12.611 26.527 40.098 1 92.38 ? C33 46E 301 A 1 HETATM 17 C C34 46E . . . B 2 12.01 25.589 39.046 1 92.35 ? C34 46E 301 A 1 HETATM 18 C C35 46E . . . B 2 11.216 26.341 37.972 1 93.9 ? C35 46E 301 A 1 HETATM 19 C C36 46E . . . B 2 11.485 25.832 36.553 1 92.83 ? C36 46E 301 A 1 HETATM 20 C C37 46E . . . B 2 10.602 24.644 36.148 1 94.46 ? C37 46E 301 A 1 HETATM 21 C C38 46E . . . B 2 9.903 24.914 34.813 1 95.87 ? C38 46E 301 A 1 HETATM 22 C C39 46E . . . B 2 9.464 23.658 34.053 1 94.39 ? C39 46E 301 A 1 HETATM 23 C C3A 46E . . . B 2 9.74 23.829 32.559 1 93.27 ? C3A 46E 301 A 1 HETATM 24 C C3B 46E . . . B 2 9.015 22.797 31.703 1 92.83 ? C3B 46E 301 A 1 HETATM 25 C C3C 46E . . . B 2 8.67 23.325 30.303 1 92 ? C3C 46E 301 A 1 HETATM 26 C C3D 46E . . . B 2 7.222 22.989 29.935 1 92.2 ? C3D 46E 301 A 1 HETATM 27 C C3E 46E . . . B 2 7.05 22.786 28.437 1 89.89 ? C3E 46E 301 A 1 HETATM 28 O O21 46E . . . B 2 7.895 30.289 41.31 1 95.92 ? O21 46E 301 A 1 HETATM 29 O O22 46E . . . B 2 7.478 31.243 39.285 1 97.12 ? O22 46E 301 A 1 HETATM 30 C C21 46E . . . B 2 8.065 30.35 39.86 1 96.17 ? C21 46E 301 A 1 HETATM 31 C C22 46E . . . B 2 8.914 29.37 39.064 1 96.29 ? C22 46E 301 A 1 HETATM 32 C C23 46E . . . B 2 8.647 29.482 37.564 1 95.55 ? C23 46E 301 A 1 HETATM 33 C C24 46E . . . B 2 9.24 30.748 36.953 1 94.24 ? C24 46E 301 A 1 HETATM 34 C C25 46E . . . B 2 8.899 30.854 35.468 1 92.55 ? C25 46E 301 A 1 HETATM 35 C C26 46E . . . B 2 8.436 32.254 35.058 1 90.16 ? C26 46E 301 A 1 HETATM 36 C C27 46E . . . B 2 9.2 32.815 33.862 1 85.25 ? C27 46E 301 A 1 HETATM 37 C C28 46E . . . B 2 8.269 33.445 32.828 1 86.1 ? C28 46E 301 A 1 HETATM 38 C C29 46E . . . B 2 7.657 34.761 33.304 1 84.77 ? C29 46E 301 A 1 HETATM 39 C C2A 46E . . . B 2 7.11 35.574 32.133 1 85.26 ? C2A 46E 301 A 1 HETATM 40 C C2B 46E . . . B 2 5.701 36.091 32.412 1 87.6 ? C2B 46E 301 A 1 HETATM 41 C C2C 46E . . . B 2 4.62 35.008 32.403 1 88.88 ? C2C 46E 301 A 1 HETATM 42 C C2D 46E . . . B 2 3.368 35.492 31.664 1 91.39 ? C2D 46E 301 A 1 HETATM 43 C C2E 46E . . . B 2 2.127 34.637 31.923 1 88.8 ? C2E 46E 301 A 1 # _model_server_stats.io_time_ms 66 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 43 #