data_5JXX
#
_model_server_result.job_id            0l-bnFHEJSL5LcZTik6sfg 
_model_server_result.datetime_utc      '2025-04-01 16:03:25' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5jxx 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":302}' 
#
_entry.id    5JXX 
#
_exptl.entry_id    5JXX 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    11 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          91.64 
_cell.angle_gamma         90 
_cell.entry_id            5JXX 
_cell.length_a            79.611 
_cell.length_b            136.897 
_cell.length_c            90.585 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5JXX 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA trimeric 3 author_and_software_defined_assembly 1 
PISA trimeric 3 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E,G,H,L,M,Q,R,T,V,X 1 1 
B,D,F,I,J,K,N,O,P,S,U,W,Y 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 G N N 
? 2 I N N 
? 2 J N N 
? 2 L N N 
? 2 M N N 
? 2 N N N 
? 2 O N N 
? 2 P N N 
? 2 Q N N 
? 2 R N N 
? 2 S N N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 146 n n 
C1 C2 GOL sing 147 n n 
C1 H11 GOL sing 148 n n 
C1 H12 GOL sing 149 n n 
O1 HO1 GOL sing 150 n n 
C2 O2 GOL sing 151 n n 
C2 C3 GOL sing 152 n n 
C2 H2 GOL sing 153 n n 
O2 HO2 GOL sing 154 n n 
C3 O3 GOL sing 155 n n 
C3 H31 GOL sing 156 n n 
C3 H32 GOL sing 157 n n 
O3 HO3 GOL sing 158 n n 
#
_atom_sites.entry_id                     5JXX 
_atom_sites.fract_transf_matrix[1][1]    0.012561 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000359 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007305 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011044 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 2 GOL A 1 301 224 GOL GOL . 
H 3 FLC A 1 302 301 FLC FLC . 
I 2 GOL B 1 301 230 GOL GOL . 
J 2 GOL B 1 302 233 GOL GOL . 
K 3 FLC B 1 303 302 FLC FLC . 
L 2 GOL C 1 301 226 GOL GOL . 
M 2 GOL C 1 302 231 GOL GOL . 
N 2 GOL D 1 301 227 GOL GOL . 
O 2 GOL D 1 302 229 GOL GOL . 
P 2 GOL D 1 303 234 GOL GOL . 
Q 2 GOL E 1 301 223 GOL GOL . 
R 2 GOL E 1 302 232 GOL GOL . 
S 2 GOL F 1 301 228 GOL GOL . 
T 4 HOH A 1 401 58 HOH HOH . 
T 4 HOH A 2 402 40 HOH HOH . 
T 4 HOH A 3 403 114 HOH HOH . 
T 4 HOH A 4 404 29 HOH HOH . 
T 4 HOH A 5 405 15 HOH HOH . 
T 4 HOH A 6 406 137 HOH HOH . 
T 4 HOH A 7 407 135 HOH HOH . 
T 4 HOH A 8 408 90 HOH HOH . 
T 4 HOH A 9 409 81 HOH HOH . 
T 4 HOH A 10 410 112 HOH HOH . 
U 4 HOH B 1 401 52 HOH HOH . 
U 4 HOH B 2 402 61 HOH HOH . 
U 4 HOH B 3 403 3 HOH HOH . 
U 4 HOH B 4 404 117 HOH HOH . 
U 4 HOH B 5 405 113 HOH HOH . 
U 4 HOH B 6 406 131 HOH HOH . 
U 4 HOH B 7 407 108 HOH HOH . 
V 4 HOH C 1 401 56 HOH HOH . 
V 4 HOH C 2 402 32 HOH HOH . 
V 4 HOH C 3 403 60 HOH HOH . 
V 4 HOH C 4 404 36 HOH HOH . 
V 4 HOH C 5 405 132 HOH HOH . 
V 4 HOH C 6 406 44 HOH HOH . 
V 4 HOH C 7 407 30 HOH HOH . 
W 4 HOH D 1 401 126 HOH HOH . 
W 4 HOH D 2 402 49 HOH HOH . 
W 4 HOH D 3 403 103 HOH HOH . 
W 4 HOH D 4 404 125 HOH HOH . 
W 4 HOH D 5 405 109 HOH HOH . 
W 4 HOH D 6 406 46 HOH HOH . 
W 4 HOH D 7 407 120 HOH HOH . 
X 4 HOH E 1 401 53 HOH HOH . 
X 4 HOH E 2 402 64 HOH HOH . 
X 4 HOH E 3 403 35 HOH HOH . 
X 4 HOH E 4 404 139 HOH HOH . 
X 4 HOH E 5 405 138 HOH HOH . 
Y 4 HOH F 1 401 17 HOH HOH . 
Y 4 HOH F 2 402 133 HOH HOH . 
Y 4 HOH F 3 403 124 HOH HOH . 
Y 4 HOH F 4 404 123 HOH HOH . 
Y 4 HOH F 5 405 7 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . M 2 27.399 11.651 38.587 1 44.91 ? C1 GOL 302 C 1 
HETATM 2 O O1 GOL . . . M 2 26.847 10.952 37.494 1 58.24 ? O1 GOL 302 C 1 
HETATM 3 C C2 GOL . . . M 2 27.456 13.137 38.259 1 43.91 ? C2 GOL 302 C 1 
HETATM 4 O O2 GOL . . . M 2 26.211 13.727 38.56 1 31.51 ? O2 GOL 302 C 1 
HETATM 5 C C3 GOL . . . M 2 27.752 13.316 36.774 1 43.28 ? C3 GOL 302 C 1 
HETATM 6 O O3 GOL . . . M 2 28.956 12.657 36.447 1 31.35 ? O3 GOL 302 C 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    34 
_model_server_stats.query_time_ms           280 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           6 
#