data_5JY3
#
_model_server_result.job_id            JAtSlyDyuKI84XW3FuMPJw 
_model_server_result.datetime_utc      '2024-11-22 07:03:52' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5jy3 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":502}' 
#
_entry.id    5JY3 
#
_exptl.entry_id    5JY3 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              90.121 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,4-BUTANEDIOL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          107.49 
_cell.angle_gamma         90 
_cell.entry_id            5JY3 
_cell.length_a            183.66 
_cell.length_b            120.35 
_cell.length_c            55.72 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5JY3 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,G,K,L 1 1 
C,D,H,I,J,M,N 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 G N N 
? 3 J N N 
#
_chem_comp.formula           'C4 H10 O2' 
_chem_comp.formula_weight    90.121 
_chem_comp.id                BU1 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,4-BUTANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 BU1 sing 141 n n 
C1 O5 BU1 sing 142 n n 
C1 H11 BU1 sing 143 n n 
C1 H12 BU1 sing 144 n n 
C2 C3 BU1 sing 145 n n 
C2 H21 BU1 sing 146 n n 
C2 H22 BU1 sing 147 n n 
C3 C4 BU1 sing 148 n n 
C3 H31 BU1 sing 149 n n 
C3 H32 BU1 sing 150 n n 
C4 O6 BU1 sing 151 n n 
C4 H41 BU1 sing 152 n n 
C4 H42 BU1 sing 153 n n 
O5 HO5 BU1 sing 154 n n 
O6 HO6 BU1 sing 155 n n 
#
_atom_sites.entry_id                     5JY3 
_atom_sites.fract_transf_matrix[1][1]    0.005445 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001716 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008309 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.018817 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 6OX A 1 501 1 6OX 041 . 
F 2 6OX B 1 501 1 6OX 041 . 
G 3 BU1 B 1 502 1 BU1 BU1 . 
H 2 6OX C 1 501 1 6OX 041 . 
I 2 6OX D 1 501 1 6OX 041 . 
J 3 BU1 D 1 502 1 BU1 BU1 . 
K 4 HOH A 1 601 101 HOH HOH . 
K 4 HOH A 2 602 168 HOH HOH . 
K 4 HOH A 3 603 116 HOH HOH . 
K 4 HOH A 4 604 15 HOH HOH . 
K 4 HOH A 5 605 122 HOH HOH . 
K 4 HOH A 6 606 36 HOH HOH . 
K 4 HOH A 7 607 100 HOH HOH . 
K 4 HOH A 8 608 209 HOH HOH . 
K 4 HOH A 9 609 201 HOH HOH . 
K 4 HOH A 10 610 96 HOH HOH . 
K 4 HOH A 11 611 19 HOH HOH . 
K 4 HOH A 12 612 171 HOH HOH . 
K 4 HOH A 13 613 169 HOH HOH . 
K 4 HOH A 14 614 142 HOH HOH . 
K 4 HOH A 15 615 99 HOH HOH . 
K 4 HOH A 16 616 131 HOH HOH . 
K 4 HOH A 17 617 20 HOH HOH . 
K 4 HOH A 18 618 208 HOH HOH . 
K 4 HOH A 19 619 124 HOH HOH . 
K 4 HOH A 20 620 13 HOH HOH . 
K 4 HOH A 21 621 17 HOH HOH . 
K 4 HOH A 22 622 45 HOH HOH . 
K 4 HOH A 23 623 197 HOH HOH . 
K 4 HOH A 24 624 14 HOH HOH . 
K 4 HOH A 25 625 22 HOH HOH . 
K 4 HOH A 26 626 54 HOH HOH . 
K 4 HOH A 27 627 118 HOH HOH . 
K 4 HOH A 28 628 186 HOH HOH . 
K 4 HOH A 29 629 67 HOH HOH . 
K 4 HOH A 30 630 198 HOH HOH . 
K 4 HOH A 31 631 105 HOH HOH . 
K 4 HOH A 32 632 110 HOH HOH . 
K 4 HOH A 33 633 53 HOH HOH . 
K 4 HOH A 34 634 177 HOH HOH . 
K 4 HOH A 35 635 205 HOH HOH . 
L 4 HOH B 1 601 157 HOH HOH . 
L 4 HOH B 2 602 75 HOH HOH . 
L 4 HOH B 3 603 156 HOH HOH . 
L 4 HOH B 4 604 46 HOH HOH . 
L 4 HOH B 5 605 153 HOH HOH . 
L 4 HOH B 6 606 27 HOH HOH . 
L 4 HOH B 7 607 91 HOH HOH . 
L 4 HOH B 8 608 21 HOH HOH . 
L 4 HOH B 9 609 85 HOH HOH . 
L 4 HOH B 10 610 104 HOH HOH . 
L 4 HOH B 11 611 136 HOH HOH . 
L 4 HOH B 12 612 207 HOH HOH . 
L 4 HOH B 13 613 5 HOH HOH . 
L 4 HOH B 14 614 73 HOH HOH . 
L 4 HOH B 15 615 90 HOH HOH . 
L 4 HOH B 16 616 137 HOH HOH . 
L 4 HOH B 17 617 190 HOH HOH . 
L 4 HOH B 18 618 112 HOH HOH . 
L 4 HOH B 19 619 196 HOH HOH . 
L 4 HOH B 20 620 18 HOH HOH . 
L 4 HOH B 21 621 48 HOH HOH . 
L 4 HOH B 22 622 155 HOH HOH . 
L 4 HOH B 23 623 128 HOH HOH . 
L 4 HOH B 24 624 6 HOH HOH . 
L 4 HOH B 25 625 79 HOH HOH . 
L 4 HOH B 26 626 57 HOH HOH . 
L 4 HOH B 27 627 40 HOH HOH . 
L 4 HOH B 28 628 135 HOH HOH . 
L 4 HOH B 29 629 59 HOH HOH . 
L 4 HOH B 30 630 64 HOH HOH . 
L 4 HOH B 31 631 60 HOH HOH . 
L 4 HOH B 32 632 87 HOH HOH . 
L 4 HOH B 33 633 43 HOH HOH . 
L 4 HOH B 34 634 184 HOH HOH . 
L 4 HOH B 35 635 117 HOH HOH . 
L 4 HOH B 36 636 58 HOH HOH . 
L 4 HOH B 37 637 183 HOH HOH . 
M 4 HOH C 1 601 84 HOH HOH . 
M 4 HOH C 2 602 147 HOH HOH . 
M 4 HOH C 3 603 191 HOH HOH . 
M 4 HOH C 4 604 63 HOH HOH . 
M 4 HOH C 5 605 71 HOH HOH . 
M 4 HOH C 6 606 34 HOH HOH . 
M 4 HOH C 7 607 107 HOH HOH . 
M 4 HOH C 8 608 206 HOH HOH . 
M 4 HOH C 9 609 16 HOH HOH . 
M 4 HOH C 10 610 144 HOH HOH . 
M 4 HOH C 11 611 41 HOH HOH . 
M 4 HOH C 12 612 154 HOH HOH . 
M 4 HOH C 13 613 141 HOH HOH . 
M 4 HOH C 14 614 49 HOH HOH . 
M 4 HOH C 15 615 113 HOH HOH . 
M 4 HOH C 16 616 82 HOH HOH . 
M 4 HOH C 17 617 3 HOH HOH . 
M 4 HOH C 18 618 187 HOH HOH . 
M 4 HOH C 19 619 44 HOH HOH . 
M 4 HOH C 20 620 174 HOH HOH . 
M 4 HOH C 21 621 98 HOH HOH . 
M 4 HOH C 22 622 199 HOH HOH . 
M 4 HOH C 23 623 139 HOH HOH . 
M 4 HOH C 24 624 170 HOH HOH . 
M 4 HOH C 25 625 115 HOH HOH . 
M 4 HOH C 26 626 164 HOH HOH . 
M 4 HOH C 27 627 176 HOH HOH . 
M 4 HOH C 28 628 195 HOH HOH . 
M 4 HOH C 29 629 132 HOH HOH . 
M 4 HOH C 30 630 108 HOH HOH . 
M 4 HOH C 31 631 120 HOH HOH . 
M 4 HOH C 32 632 47 HOH HOH . 
M 4 HOH C 33 633 114 HOH HOH . 
M 4 HOH C 34 634 140 HOH HOH . 
M 4 HOH C 35 635 35 HOH HOH . 
M 4 HOH C 36 636 69 HOH HOH . 
M 4 HOH C 37 637 175 HOH HOH . 
N 4 HOH D 1 601 121 HOH HOH . 
N 4 HOH D 2 602 65 HOH HOH . 
N 4 HOH D 3 603 23 HOH HOH . 
N 4 HOH D 4 604 31 HOH HOH . 
N 4 HOH D 5 605 146 HOH HOH . 
N 4 HOH D 6 606 8 HOH HOH . 
N 4 HOH D 7 607 72 HOH HOH . 
N 4 HOH D 8 608 151 HOH HOH . 
N 4 HOH D 9 609 173 HOH HOH . 
N 4 HOH D 10 610 172 HOH HOH . 
N 4 HOH D 11 611 125 HOH HOH . 
N 4 HOH D 12 612 148 HOH HOH . 
N 4 HOH D 13 613 33 HOH HOH . 
N 4 HOH D 14 614 163 HOH HOH . 
N 4 HOH D 15 615 129 HOH HOH . 
N 4 HOH D 16 616 143 HOH HOH . 
N 4 HOH D 17 617 103 HOH HOH . 
N 4 HOH D 18 618 181 HOH HOH . 
N 4 HOH D 19 619 30 HOH HOH . 
N 4 HOH D 20 620 28 HOH HOH . 
N 4 HOH D 21 621 86 HOH HOH . 
N 4 HOH D 22 622 81 HOH HOH . 
N 4 HOH D 23 623 202 HOH HOH . 
N 4 HOH D 24 624 68 HOH HOH . 
N 4 HOH D 25 625 133 HOH HOH . 
N 4 HOH D 26 626 203 HOH HOH . 
N 4 HOH D 27 627 204 HOH HOH . 
N 4 HOH D 28 628 119 HOH HOH . 
N 4 HOH D 29 629 167 HOH HOH . 
N 4 HOH D 30 630 166 HOH HOH . 
N 4 HOH D 31 631 80 HOH HOH . 
N 4 HOH D 32 632 180 HOH HOH . 
N 4 HOH D 33 633 106 HOH HOH . 
N 4 HOH D 34 634 189 HOH HOH . 
N 4 HOH D 35 635 127 HOH HOH . 
N 4 HOH D 36 636 134 HOH HOH . 
N 4 HOH D 37 637 78 HOH HOH . 
N 4 HOH D 38 638 158 HOH HOH . 
N 4 HOH D 39 639 193 HOH HOH . 
N 4 HOH D 40 640 61 HOH HOH . 
N 4 HOH D 41 641 123 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 BU1 . . . J 3 75.521 29.616 12.662 1 45.85 ? C1 BU1 502 D 1 
HETATM 2 C C2 BU1 . . . J 3 76.111 28.244 13.001 1 44.84 ? C2 BU1 502 D 1 
HETATM 3 C C3 BU1 . . . J 3 75.277 27.847 14.192 1 46.44 ? C3 BU1 502 D 1 
HETATM 4 C C4 BU1 . . . J 3 74.575 26.51 14.062 1 50.95 ? C4 BU1 502 D 1 
HETATM 5 O O5 BU1 . . . J 3 76.488 30.667 12.661 1 48.69 ? O5 BU1 502 D 1 
HETATM 6 O O6 BU1 . . . J 3 73.251 26.88 14.474 1 55.04 ? O6 BU1 502 D 1 
#
_model_server_stats.io_time_ms              54 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           287 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           6 
#