data_5JY4 # _model_server_result.job_id G5mSXPNd4WKomtnD4UfwFQ _model_server_result.datetime_utc '2024-11-29 14:59:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5jy4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":402}' # _entry.id 5JY4 # _exptl.entry_id 5JY4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 226.183 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(5S,6S)-5-[(1-carboxyethenyl)oxy]-6-hydroxycyclohexa-1,3-diene-1-carboxylic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5JY4 _cell.length_a 80.907 _cell.length_b 80.907 _cell.length_c 265.231 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5JY4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLY 34 A GLY 34 1_555 A N CSO 35 A CSO 35 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale2 A C CSO 35 A CSO 35 1_555 A N PHE 36 A PHE 36 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? metalc ? metalc1 A OE2 GLU 241 A GLU 241 1_555 C MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? metalc ? metalc2 A OE2 GLU 376 A GLU 376 1_555 C MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? metalc ? metalc3 C MG MG . A MG 401 1_555 D O1 ISC . A ISC 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.168 ? metalc ? metalc4 C MG MG . A MG 401 1_555 D O2 ISC . A ISC 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.992 ? metalc ? metalc5 C MG MG . A MG 401 1_555 G O HOH . A HOH 515 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? metalc ? metalc6 C MG MG . A MG 401 1_555 G O HOH . A HOH 522 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.992 ? metalc ? metalc7 B OE1 GLU 241 B GLU 241 1_555 E MG MG . B MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.947 ? metalc ? metalc8 B OE2 GLU 241 B GLU 241 1_555 E MG MG . B MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.994 ? metalc ? metalc9 B OE2 GLU 376 B GLU 376 1_555 E MG MG . B MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.185 ? metalc ? metalc10 E MG MG . B MG 401 1_555 F O1 ISC . B ISC 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.234 ? metalc ? metalc11 E MG MG . B MG 401 1_555 F O2 ISC . B ISC 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? metalc ? metalc12 E MG MG . B MG 401 1_555 H O HOH . B HOH 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.878 ? metalc ? metalc13 E MG MG . B MG 401 1_555 H O HOH . B HOH 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.996 ? # _chem_comp.formula 'C10 H10 O6' _chem_comp.formula_weight 226.183 _chem_comp.id ISC _chem_comp.mon_nstd_flag . _chem_comp.name '(5S,6S)-5-[(1-carboxyethenyl)oxy]-6-hydroxycyclohexa-1,3-diene-1-carboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ISOCHORISMIC ACID' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C C1 ISC sing 187 n n C O1 ISC doub 188 n n C O2 ISC sing 189 n n C1 C2 ISC sing 190 n n C1 C6 ISC doub 191 n n C2 C3 ISC sing 192 n n C2 O3 ISC sing 193 n n C3 C4 ISC sing 194 n n C3 O3' ISC sing 195 n n C4 C5 ISC doub 196 n n C5 C6 ISC sing 197 n n C1' O1' ISC sing 198 n n C1' C2' ISC sing 199 n n C1' O2' ISC doub 200 n n C2' C3' ISC doub 201 n n C2' O3' ISC sing 202 n n C2 H2 ISC sing 203 n n C3 H3 ISC sing 204 n n O3 HO3 ISC sing 205 n n C4 H4 ISC sing 206 n n C5 H5 ISC sing 207 n n C6 H6 ISC sing 208 n n C3' H3' ISC sing 209 n n C3' "H3'A" ISC sing 210 n n O1' HO1' ISC sing 211 n n O2 HO2 ISC sing 212 n n # _atom_sites.entry_id 5JY4 _atom_sites.fract_transf_matrix[1][1] 0.01236 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01236 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00377 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MG A 1 401 1 MG MG . D 4 ISC A 1 402 2 ISC ISC . E 3 MG B 1 401 2 MG MG . F 4 ISC B 1 402 3 ISC ISC . G 5 HOH A 1 501 45 HOH HOH . G 5 HOH A 2 502 70 HOH HOH . G 5 HOH A 3 503 127 HOH HOH . G 5 HOH A 4 504 38 HOH HOH . G 5 HOH A 5 505 25 HOH HOH . G 5 HOH A 6 506 8 HOH HOH . G 5 HOH A 7 507 11 HOH HOH . G 5 HOH A 8 508 47 HOH HOH . G 5 HOH A 9 509 10 HOH HOH . G 5 HOH A 10 510 37 HOH HOH . G 5 HOH A 11 511 65 HOH HOH . G 5 HOH A 12 512 51 HOH HOH . G 5 HOH A 13 513 57 HOH HOH . G 5 HOH A 14 514 71 HOH HOH . G 5 HOH A 15 515 5 HOH HOH . G 5 HOH A 16 516 4 HOH HOH . G 5 HOH A 17 517 21 HOH HOH . G 5 HOH A 18 518 13 HOH HOH . G 5 HOH A 19 519 41 HOH HOH . G 5 HOH A 20 520 14 HOH HOH . G 5 HOH A 21 521 12 HOH HOH . G 5 HOH A 22 522 1 HOH HOH . G 5 HOH A 23 523 27 HOH HOH . G 5 HOH A 24 524 84 HOH HOH . G 5 HOH A 25 525 63 HOH HOH . G 5 HOH A 26 526 68 HOH HOH . G 5 HOH A 27 527 20 HOH HOH . G 5 HOH A 28 528 64 HOH HOH . G 5 HOH A 29 529 76 HOH HOH . G 5 HOH A 30 530 17 HOH HOH . G 5 HOH A 31 531 66 HOH HOH . G 5 HOH A 32 532 73 HOH HOH . G 5 HOH A 33 533 9 HOH HOH . G 5 HOH A 34 534 35 HOH HOH . G 5 HOH A 35 535 43 HOH HOH . G 5 HOH A 36 536 53 HOH HOH . G 5 HOH A 37 537 33 HOH HOH . G 5 HOH A 38 538 55 HOH HOH . G 5 HOH A 39 539 129 HOH HOH . G 5 HOH A 40 540 74 HOH HOH . G 5 HOH A 41 541 36 HOH HOH . G 5 HOH A 42 542 28 HOH HOH . G 5 HOH A 43 543 61 HOH HOH . G 5 HOH A 44 544 54 HOH HOH . G 5 HOH A 45 545 50 HOH HOH . G 5 HOH A 46 546 58 HOH HOH . G 5 HOH A 47 547 52 HOH HOH . G 5 HOH A 48 548 44 HOH HOH . G 5 HOH A 49 549 122 HOH HOH . G 5 HOH A 50 550 22 HOH HOH . G 5 HOH A 51 551 88 HOH HOH . G 5 HOH A 52 552 120 HOH HOH . G 5 HOH A 53 553 56 HOH HOH . G 5 HOH A 54 554 19 HOH HOH . G 5 HOH A 55 555 90 HOH HOH . G 5 HOH A 56 556 134 HOH HOH . G 5 HOH A 57 557 30 HOH HOH . G 5 HOH A 58 558 77 HOH HOH . G 5 HOH A 59 559 75 HOH HOH . G 5 HOH A 60 560 104 HOH HOH . G 5 HOH A 61 561 86 HOH HOH . G 5 HOH A 62 562 139 HOH HOH . G 5 HOH A 63 563 82 HOH HOH . G 5 HOH A 64 564 111 HOH HOH . G 5 HOH A 65 565 118 HOH HOH . G 5 HOH A 66 566 137 HOH HOH . G 5 HOH A 67 567 121 HOH HOH . G 5 HOH A 68 568 123 HOH HOH . G 5 HOH A 69 569 83 HOH HOH . G 5 HOH A 70 570 100 HOH HOH . G 5 HOH A 71 571 119 HOH HOH . G 5 HOH A 72 572 130 HOH HOH . G 5 HOH A 73 573 132 HOH HOH . G 5 HOH A 74 574 135 HOH HOH . G 5 HOH A 75 575 141 HOH HOH . G 5 HOH A 76 576 78 HOH HOH . G 5 HOH A 77 577 125 HOH HOH . G 5 HOH A 78 578 110 HOH HOH . G 5 HOH A 79 579 128 HOH HOH . G 5 HOH A 80 580 40 HOH HOH . G 5 HOH A 81 581 106 HOH HOH . G 5 HOH A 82 582 80 HOH HOH . G 5 HOH A 83 583 79 HOH HOH . G 5 HOH A 84 584 138 HOH HOH . G 5 HOH A 85 585 105 HOH HOH . G 5 HOH A 86 586 109 HOH HOH . H 5 HOH B 1 501 6 HOH HOH . H 5 HOH B 2 502 3 HOH HOH . H 5 HOH B 3 503 24 HOH HOH . H 5 HOH B 4 504 89 HOH HOH . H 5 HOH B 5 505 42 HOH HOH . H 5 HOH B 6 506 69 HOH HOH . H 5 HOH B 7 507 2 HOH HOH . H 5 HOH B 8 508 114 HOH HOH . H 5 HOH B 9 509 29 HOH HOH . H 5 HOH B 10 510 72 HOH HOH . H 5 HOH B 11 511 39 HOH HOH . H 5 HOH B 12 512 7 HOH HOH . H 5 HOH B 13 513 15 HOH HOH . H 5 HOH B 14 514 26 HOH HOH . H 5 HOH B 15 515 49 HOH HOH . H 5 HOH B 16 516 16 HOH HOH . H 5 HOH B 17 517 85 HOH HOH . H 5 HOH B 18 518 23 HOH HOH . H 5 HOH B 19 519 31 HOH HOH . H 5 HOH B 20 520 60 HOH HOH . H 5 HOH B 21 521 62 HOH HOH . H 5 HOH B 22 522 48 HOH HOH . H 5 HOH B 23 523 32 HOH HOH . H 5 HOH B 24 524 59 HOH HOH . H 5 HOH B 25 525 108 HOH HOH . H 5 HOH B 26 526 34 HOH HOH . H 5 HOH B 27 527 93 HOH HOH . H 5 HOH B 28 528 87 HOH HOH . H 5 HOH B 29 529 91 HOH HOH . H 5 HOH B 30 530 18 HOH HOH . H 5 HOH B 31 531 97 HOH HOH . H 5 HOH B 32 532 81 HOH HOH . H 5 HOH B 33 533 94 HOH HOH . H 5 HOH B 34 534 131 HOH HOH . H 5 HOH B 35 535 117 HOH HOH . H 5 HOH B 36 536 133 HOH HOH . H 5 HOH B 37 537 101 HOH HOH . H 5 HOH B 38 538 112 HOH HOH . H 5 HOH B 39 539 126 HOH HOH . H 5 HOH B 40 540 99 HOH HOH . H 5 HOH B 41 541 103 HOH HOH . H 5 HOH B 42 542 95 HOH HOH . H 5 HOH B 43 543 107 HOH HOH . H 5 HOH B 44 544 102 HOH HOH . H 5 HOH B 45 545 98 HOH HOH . H 5 HOH B 46 546 67 HOH HOH . H 5 HOH B 47 547 140 HOH HOH . H 5 HOH B 48 548 124 HOH HOH . H 5 HOH B 49 549 115 HOH HOH . H 5 HOH B 50 550 136 HOH HOH . H 5 HOH B 51 551 116 HOH HOH . H 5 HOH B 52 552 96 HOH HOH . H 5 HOH B 53 553 46 HOH HOH . H 5 HOH B 54 554 113 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C ISC . . . F 4 -15.149 -48.898 3.255 1 46.15 ? C ISC 402 B 1 HETATM 2 C C1 ISC . . . F 4 -14.499 -48.786 1.826 1 44.43 ? C1 ISC 402 B 1 HETATM 3 O O1 ISC . . . F 4 -16.304 -48.403 3.487 1 35.7 ? O1 ISC 402 B 1 HETATM 4 C C2 ISC . . . F 4 -15.305 -48.188 0.708 1 57.36 ? C2 ISC 402 B 1 HETATM 5 O O2 ISC . . . F 4 -14.487 -49.465 4.162 1 37.11 ? O2 ISC 402 B 1 HETATM 6 C C3 ISC . . . F 4 -14.473 -47.687 -0.513 1 65.6 ? C3 ISC 402 B 1 HETATM 7 O O3 ISC . . . F 4 -16.256 -49.17 0.21 1 67.59 ? O3 ISC 402 B 1 HETATM 8 C C4 ISC . . . F 4 -13.263 -48.54 -0.871 1 45.78 ? C4 ISC 402 B 1 HETATM 9 C C5 ISC . . . F 4 -12.345 -48.784 0.302 1 44.67 ? C5 ISC 402 B 1 HETATM 10 C C6 ISC . . . F 4 -12.98 -48.684 1.705 1 41.72 ? C6 ISC 402 B 1 HETATM 11 C C1' ISC . . . F 4 -13.9 -43.972 -0.473 1 47.01 ? C1' ISC 402 B 1 HETATM 12 O O1' ISC . . . F 4 -12.707 -44.071 -0.172 1 43.11 ? O1' ISC 402 B 1 HETATM 13 C C2' ISC . . . F 4 -14.693 -45.247 -0.584 1 49.2 ? C2' ISC 402 B 1 HETATM 14 O O2' ISC . . . F 4 -14.453 -42.854 -0.659 1 45.87 ? O2' ISC 402 B 1 HETATM 15 C C3' ISC . . . F 4 -15.943 -45.21 -1.056 1 46.73 ? C3' ISC 402 B 1 HETATM 16 O O3' ISC . . . F 4 -13.998 -46.402 -0.148 1 51.69 ? O3' ISC 402 B 1 HETATM 17 H H2 ISC . . . F 4 -15.799 -47.433 1.066 1 68.83 ? H2 ISC 402 B 1 HETATM 18 H H3 ISC . . . F 4 -15.051 -47.612 -1.288 1 78.73 ? H3 ISC 402 B 1 HETATM 19 H HO3 ISC . . . F 4 -16.889 -48.773 -0.195 1 81.1 ? HO3 ISC 402 B 1 HETATM 20 H H4 ISC . . . F 4 -13.319 -49.166 -1.556 1 54.93 ? H4 ISC 402 B 1 HETATM 21 H H5 ISC . . . F 4 -11.548 -49.248 0.183 1 53.6 ? H5 ISC 402 B 1 HETATM 22 H H6 ISC . . . F 4 -12.474 -48.393 2.429 1 50.06 ? H6 ISC 402 B 1 HETATM 23 H H3' ISC . . . F 4 -16.437 -45.995 -1.126 1 56.07 ? H3' ISC 402 B 1 HETATM 24 H "H3'A" ISC . . . F 4 -16.317 -44.4 -1.319 1 56.07 ? "H3'A" ISC 402 B 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 55 _model_server_stats.query_time_ms 335 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 24 #