data_5JY8
#
_model_server_result.job_id            1C-roDyQJsiir0RSOm4i3g 
_model_server_result.datetime_utc      '2025-02-18 09:16:19' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5jy8 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":403}' 
#
_entry.id    5JY8 
#
_exptl.entry_id    5JY8 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              226.183 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(3R,4R)-3-[(1-carboxyethenyl)oxy]-4-hydroxycyclohexa-1,5-diene-1-carboxylic acid' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5JY8 
_cell.length_a            81.377 
_cell.length_b            81.377 
_cell.length_c            262.283 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5JY8 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E 1 1 
B,F,G,H 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 H N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OE2 GLU 241 A GLU 241 1_555 C FE FE . A FE 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.357 ? 
metalc ? metalc2 A OE2 GLU 259 A GLU 259 1_555 D FE FE . A FE 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.256 ? 
metalc ? metalc3 A NE2 HIS 261 A HIS 261 1_555 D FE FE . A FE 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.172 ? 
metalc ? metalc4 A OE2 GLU 376 A GLU 376 1_555 C FE FE . A FE 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.265 ? 
metalc ? metalc5 C FE FE . A FE 401 1_555 E O8 ISJ . A ISJ 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? 
metalc ? metalc6 B OD1 ASP 40 B ASP 40 1_555 G FE FE . B FE 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.432 ? 
metalc ? metalc7 B OD2 ASP 40 B ASP 40 1_555 G FE FE . B FE 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.95 ? 
metalc ? metalc8 B OE1 GLU 41 B GLU 41 1_555 G FE FE . B FE 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.778 ? 
metalc ? metalc9 B OE1 GLU 241 B GLU 241 1_555 F FE FE . B FE 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.608 ? 
metalc ? metalc10 B OE2 GLU 241 B GLU 241 1_555 F FE FE . B FE 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.216 ? 
metalc ? metalc11 B OE1 GLU 376 B GLU 376 1_555 F FE FE . B FE 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.748 ? 
metalc ? metalc12 B OE2 GLU 376 B GLU 376 1_555 F FE FE . B FE 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.45 ? 
metalc ? metalc13 F FE FE . B FE 401 1_555 H O8 ISJ . B ISJ 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? 
metalc ? metalc14 F FE FE . B FE 401 1_555 H O9 ISJ . B ISJ 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.964 ? 
#
_chem_comp.formula           'C10 H10 O6' 
_chem_comp.formula_weight    226.183 
_chem_comp.id                ISJ 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(3R,4R)-3-[(1-carboxyethenyl)oxy]-4-hydroxycyclohexa-1,5-diene-1-carboxylic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'Chorismic Acid' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 ISJ sing 171 n n 
C1 C6 ISJ sing 172 n n 
C1 O11 ISJ sing 173 n n 
C2 C3 ISJ doub 174 n n 
C3 C4 ISJ sing 175 n n 
C3 C7 ISJ sing 176 n n 
C4 C5 ISJ doub 177 n n 
C5 C6 ISJ sing 178 n n 
C6 O10 ISJ sing 179 n n 
C7 O8 ISJ doub 180 n n 
C7 O9 ISJ sing 181 n n 
O11 C12 ISJ sing 182 n n 
C12 C13 ISJ sing 183 n n 
C12 C16 ISJ doub 184 n n 
C13 O14 ISJ doub 185 n n 
C13 O15 ISJ sing 186 n n 
C1 H1 ISJ sing 187 n n 
C2 H2 ISJ sing 188 n n 
C4 H4 ISJ sing 189 n n 
C5 H5 ISJ sing 190 n n 
C6 H6 ISJ sing 191 n n 
O9 HO9 ISJ sing 192 n n 
O10 HO10 ISJ sing 193 n n 
O15 HO15 ISJ sing 194 n n 
C16 H16 ISJ sing 195 n n 
C16 H16A ISJ sing 196 n n 
#
_atom_sites.entry_id                     5JY8 
_atom_sites.fract_transf_matrix[1][1]    0.012288 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012288 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003813 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 FE A 1 401 1 FE FE . 
D 2 FE A 1 402 3 FE FE . 
E 3 ISJ A 1 403 1 ISJ ISJ . 
F 2 FE B 1 401 2 FE FE . 
G 2 FE B 1 402 4 FE FE . 
H 3 ISJ B 1 403 2 ISJ ISJ . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 ISJ . . . H 3 -14.54 -47.574 0.031 1 45.95 ? C1 ISJ 403 B 1 
HETATM 2 C C2 ISJ . . . H 3 -15.228 -48.292 1.164 1 44.94 ? C2 ISJ 403 B 1 
HETATM 3 C C3 ISJ . . . H 3 -14.409 -48.615 2.404 1 46.05 ? C3 ISJ 403 B 1 
HETATM 4 C C4 ISJ . . . H 3 -12.933 -48.949 2.198 1 46 ? C4 ISJ 403 B 1 
HETATM 5 C C5 ISJ . . . H 3 -12.444 -48.929 0.755 1 44.14 ? C5 ISJ 403 B 1 
HETATM 6 C C6 ISJ . . . H 3 -13.05 -47.942 -0.214 1 44.16 ? C6 ISJ 403 B 1 
HETATM 7 C C7 ISJ . . . H 3 -15.084 -48.838 3.749 1 46.88 ? C7 ISJ 403 B 1 
HETATM 8 O O8 ISJ . . . H 3 -16.32 -49.055 3.796 1 47.13 -1 O8 ISJ 403 B 1 
HETATM 9 O O9 ISJ . . . H 3 -14.4 -48.802 4.802 1 46.57 ? O9 ISJ 403 B 1 
HETATM 10 O O10 ISJ . . . H 3 -12.972 -48.499 -1.499 1 44.25 ? O10 ISJ 403 B 1 
HETATM 11 O O11 ISJ . . . H 3 -14.61 -46.199 0.331 1 43.04 ? O11 ISJ 403 B 1 
HETATM 12 C C12 ISJ . . . H 3 -14.458 -45.27 -0.71 1 39.07 ? C12 ISJ 403 B 1 
HETATM 13 C C13 ISJ . . . H 3 -13.562 -44.044 -0.508 1 36.53 ? C13 ISJ 403 B 1 
HETATM 14 O O14 ISJ . . . H 3 -14.04 -42.878 -0.574 1 33 ? O14 ISJ 403 B 1 
HETATM 15 O O15 ISJ . . . H 3 -12.335 -44.201 -0.278 1 35.75 -1 O15 ISJ 403 B 1 
HETATM 16 C C16 ISJ . . . H 3 -15.088 -45.43 -1.859 1 40.89 ? C16 ISJ 403 B 1 
HETATM 17 H H1 ISJ . . . H 3 -15.036 -47.743 -0.785 1 55.15 ? H1 ISJ 403 B 1 
HETATM 18 H H2 ISJ . . . H 3 -16.157 -48.323 1.199 1 53.92 ? H2 ISJ 403 B 1 
HETATM 19 H H4 ISJ . . . H 3 -12.474 -49.445 2.837 1 55.2 ? H4 ISJ 403 B 1 
HETATM 20 H H5 ISJ . . . H 3 -11.687 -49.412 0.513 1 52.97 ? H5 ISJ 403 B 1 
HETATM 21 H H6 ISJ . . . H 3 -12.525 -47.127 -0.192 1 52.99 ? H6 ISJ 403 B 1 
HETATM 22 H HO10 ISJ . . . H 3 -12.415 -48.058 -1.965 1 53.1 ? HO10 ISJ 403 B 1 
HETATM 23 H H16 ISJ . . . H 3 -15.635 -46.17 -1.99 1 49.07 ? H16 ISJ 403 B 1 
HETATM 24 H H16A ISJ . . . H 3 -14.979 -44.805 -2.539 1 49.07 ? H16A ISJ 403 B 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           22 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           284 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           24 
#